Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 0.0e+00 1389.4 789 100.0
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.7e-279 964.9 840 70.8
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 3.0e-276 955.3 772 70.9
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 3.4e-216 755.7 815 60.6
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 7.4e-195 684.9 754 58.2
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 3.7e-186 656.0 812 55.3
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 4.7e-181 639.0 836 53.6
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 3.4e-179 632.9 799 54.2
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 1.4e-177 627.5 801 53.7
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 1.7e-175 620.5 822 52.8
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 7.2e-174 615.1 818 53.3
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 6.1e-173 612.1 786 53.2
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 6.8e-172 608.6 817 52.3
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.5e-171 607.4 845 52.0
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 2.2e-170 603.6 828 52.3
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 2.8e-170 603.2 822 51.3
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 3.7e-170 602.8 811 52.2
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 1.8e-169 600.5 783 52.1
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 5.4e-169 599.0 783 52.0
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 6.6e-167 592.0 829 50.8
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 8.6e-167 591.7 826 50.2
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 1.1e-166 591.3 812 49.5
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 2.5e-166 590.1 818 50.9
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.2e-165 587.8 824 50.6
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 8.9e-164 581.6 815 51.0
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 9.8e-163 578.2 783 50.1
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 3.7e-162 576.2 828 49.0
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 6.4e-162 575.5 788 51.5
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 6.4e-162 575.5 819 49.9
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 1.4e-161 574.3 822 49.9
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 1.6e-160 570.9 819 50.2
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 2.7e-160 570.1 838 49.8
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 3.5e-160 569.7 833 51.0
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 4.6e-160 569.3 816 50.9
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 3.0e-159 566.6 766 51.3
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 5.0e-159 565.8 751 52.3
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 6.6e-159 565.5 838 49.4
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 3.3e-158 563.1 819 50.8
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 5.6e-158 562.4 859 47.5
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 7.3e-158 562.0 822 49.0
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 6.2e-157 558.9 788 49.7
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 1.1e-156 558.1 830 46.9
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 5.2e-156 555.8 819 48.0
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 5.2e-156 555.8 819 48.0
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 5.2e-156 555.8 817 48.0
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 2.0e-155 553.9 820 49.3
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 4.4e-155 552.7 751 51.9
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 2.9e-154 550.1 704 54.5
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 3.7e-154 549.7 817 48.3
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 4.9e-154 549.3 696 54.6
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 8.3e-154 548.5 786 49.9
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 1.1e-153 548.1 816 47.7
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 4.1e-153 546.2 784 51.7
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 7.0e-153 545.4 789 50.1
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 1.2e-152 544.7 821 47.7
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 2.7e-152 543.5 825 49.5
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 3.5e-152 543.1 824 48.7
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 6.0e-152 542.3 823 48.4
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 1.0e-151 541.6 821 47.5
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 1.0e-151 541.6 821 47.5
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 3.9e-151 539.7 817 47.6
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 6.6e-151 538.9 843 48.3
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 3.3e-150 536.6 829 47.4
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 5.6e-150 535.8 795 47.8
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 9.5e-150 535.0 836 48.0
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 2.8e-149 533.5 846 48.0
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.8e-149 533.5 812 48.5
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 6.2e-149 532.3 835 46.6
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 6.2e-149 532.3 851 45.2
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 1.1e-148 531.6 787 48.9
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 7.5e-147 525.4 764 48.8
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 1.3e-146 524.6 794 48.6
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 1.7e-146 524.2 830 46.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 4.9e-146 522.7 810 48.3
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 8.3e-146 521.9 818 47.9
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 2.4e-145 520.4 803 49.2
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 9.2e-145 518.5 816 47.5
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 1.2e-144 518.1 808 49.0
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.3e-143 514.6 853 45.0
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 6.6e-143 512.3 793 47.7
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 1.6e-141 507.7 825 48.0
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 2.9e-138 496.9 843 45.6
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 1.1e-137 495.0 819 45.9
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 4.6e-128 463.0 593 56.0
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 6.9e-124 449.1 822 44.6
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.3e-117 428.3 825 41.9
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 2.0e-115 421.0 778 44.7
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 2.3e-103 380.9 798 39.5
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.0e-94 351.3 528 52.3
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 4.8e-85 320.1 617 34.7
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 1.5e-83 315.1 534 50.0
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 4.1e-76 290.4 541 47.1
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 1.5e-73 282.0 356 44.4
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.6e-67 261.9 818 34.5
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 7.7e-67 259.6 406 48.0
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 1.3e-58 232.3 251 50.6
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 7.2e-57 226.5 824 32.3
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.7e-53 215.3 691 34.2
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 4.4e-46 190.7 234 48.7
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 8.6e-42 176.4 211 48.3
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 8.0e-40 169.9 528 34.8
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 5.8e-38 163.7 309 32.7
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 4.1e-28 131.0 258 34.5
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 8.4e-21 106.7 108 49.1
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 5.8e-14 84.0 113 40.7
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 1.7e-13 82.4 74 56.8
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 6.0e-11 73.9 126 36.5
BcaB05g21499 Brassica carinata HOM05D007251 ORTHO05D009266 6.2e-08 63.9 171 28.1
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 1.4e-07 62.8 171 28.1
SMO340G0285 Selaginella moellendorffii HOM05D002785 ORTHO05D000003 9.0e-07 60.1 116 32.8
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 1.5e-06 59.3 394 20.8
A02p00600 Brassica napus HOM05D007251 ORTHO05D009266 2.6e-06 58.5 171 27.5
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 3.4e-06 58.2 237 24.1
AagrBONN_evm.TU.Sc2ySwM_368.2099 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.8e-06 57.4 208 22.6
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 5.8e-06 57.4 156 26.9
Dinv31157 Davidia involucrata HOM05D007063 ORTHO05D008822 7.6e-06 57.0 150 24.7
EL10Ac2g04350 Beta vulgaris HOM05D001779 ORTHO05D001753 9.9e-06 56.6 159 26.4
C09p70390 Brassica napus HOM05D006596 ORTHO05D008497 9.9e-06 56.6 154 24.0
CAN.G50.4 Capsicum annuum HOM05D001779 ORTHO05D001753 9.9e-06 56.6 190 23.7


User provided reference genes

Program Settings