Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 0.0e+00 1292.3 626 100.0
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 0.0e+00 1228.8 677 89.1
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 7.5e-275 950.3 682 71.0
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 1.8e-260 902.5 683 66.3
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 1.1e-214 750.4 693 57.1
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 2.3e-207 726.1 682 56.9
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 7.4e-206 721.1 688 55.5
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.2e-203 713.8 694 54.3
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 7.7e-203 711.1 707 53.7
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.9e-202 709.1 694 53.9
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.9e-201 706.4 688 55.4
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 2.5e-201 706.1 685 54.9
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.6e-200 703.4 688 55.1
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 3.6e-200 702.2 691 54.8
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 1.0e-199 700.7 691 54.1
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.6e-198 696.0 688 54.8
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 5.7e-198 694.9 682 54.0
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.3e-197 693.7 696 53.6
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 6.3e-197 691.4 679 54.5
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 1.4e-196 690.3 679 54.3
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.4e-196 689.5 680 54.1
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.3e-196 688.3 696 53.0
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 1.2e-195 687.2 689 54.1
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 1.2e-195 687.2 701 52.6
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 1.2e-195 687.2 700 54.1
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 1.2e-195 687.2 699 53.4
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.6e-195 686.8 693 53.8
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 2.0e-195 686.4 696 54.9
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 2.0e-195 686.4 699 53.4
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 3.5e-195 685.6 711 52.3
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.0e-194 684.1 680 53.4
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.0e-194 684.1 699 53.2
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 1.0e-194 684.1 682 54.0
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 1.3e-194 683.7 680 54.3
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.3e-194 683.7 701 53.5
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 1.3e-194 683.7 693 54.7
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 1.7e-194 683.3 680 55.0
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 2.9e-194 682.6 681 53.2
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 2.9e-194 682.6 682 53.8
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 3.8e-194 682.2 680 54.0
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 6.5e-194 681.4 679 53.0
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 8.5e-194 681.0 703 52.6
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 1.1e-193 680.6 692 53.2
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.5e-193 680.2 691 52.1
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 4.2e-193 678.7 686 53.6
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 4.2e-193 678.7 680 54.0
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 4.2e-193 678.7 680 54.0
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 4.2e-193 678.7 680 54.0
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.2e-193 678.7 705 52.8
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.6e-192 676.8 705 52.6
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.1e-192 676.4 680 53.1
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 2.7e-192 676.0 682 53.7
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 6.1e-192 674.9 697 52.4
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 6.1e-192 674.9 680 52.6
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 8.0e-192 674.5 699 52.5
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 1.8e-191 673.3 681 53.9
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.8e-191 673.3 702 53.4
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 2.3e-191 672.9 686 53.1
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 6.8e-191 671.4 698 52.1
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 2.6e-190 669.5 693 52.5
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 5.7e-190 668.3 681 52.7
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 2.2e-189 666.4 702 52.7
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 2.8e-189 666.0 694 51.9
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 4.8e-189 665.2 682 52.6
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 8.3e-189 664.5 682 52.3
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 8.3e-189 664.5 702 52.6
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 3.1e-188 662.5 714 52.0
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 3.1e-188 662.5 681 54.6
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 7.0e-188 661.4 687 53.0
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 1.2e-187 660.6 685 53.0
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 3.5e-187 659.1 698 51.0
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 4.5e-187 658.7 658 54.3
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.0e-186 657.5 694 52.6
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 1.3e-186 657.1 691 51.8
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 1.7e-186 656.8 691 52.8
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 2.2e-186 656.4 685 52.8
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 3.8e-186 655.6 683 53.1
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 5.0e-186 655.2 702 52.4
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 5.0e-186 655.2 690 52.0
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 2.5e-185 652.9 697 51.1
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 1.6e-184 650.2 689 52.0
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 6.1e-184 648.3 702 52.0
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 6.1e-184 648.3 682 52.2
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 1.4e-183 647.1 715 49.9
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 3.0e-183 646.0 690 52.3
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 1.5e-182 643.7 689 52.1
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 2.0e-182 643.3 704 51.1
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 1.3e-181 640.6 696 51.6
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 3.7e-181 639.0 684 51.3
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 4.9e-181 638.6 707 49.2
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 6.3e-181 638.3 698 50.7
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 8.3e-181 637.9 680 50.0
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.4e-180 636.3 700 50.7
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 2.7e-179 632.9 699 51.2
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.8e-178 629.0 678 49.9
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 3.8e-178 629.0 682 50.9
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 1.9e-177 626.7 686 50.1
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 2.5e-177 626.3 684 51.0
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 3.3e-177 625.9 681 50.2
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 4.3e-177 625.5 700 50.4
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 9.5e-177 624.4 688 49.7
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 3.6e-176 622.5 686 50.7
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.0e-175 620.9 686 49.9
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 7.5e-174 614.8 637 53.4
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 9.8e-174 614.4 683 49.3
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 1.7e-173 613.6 682 48.8
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.7e-173 612.5 686 49.6
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 1.8e-172 610.1 685 49.1
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 4.6e-171 605.5 686 48.4
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 4.7e-168 595.5 690 48.4
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 3.4e-166 589.3 568 54.0
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 4.9e-165 585.5 678 49.0
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 7.3e-161 571.6 682 47.7
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 2.1e-160 570.1 679 49.2
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 2.1e-160 570.1 569 53.1
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.4e-159 567.4 677 47.6
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 8.9e-159 564.7 677 47.3
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 8.9e-159 564.7 677 47.4
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 5.8e-158 562.0 692 46.2
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 3.9e-154 549.3 678 46.6
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 8.1e-152 541.6 656 48.8
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 1.1e-148 531.2 687 46.6
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.5e-145 520.0 684 43.6
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 8.9e-143 511.5 814 39.9
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 2.0e-142 510.4 693 43.7
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 4.9e-141 505.8 707 42.6
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 1.1e-140 504.6 694 43.9
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 5.4e-140 502.3 448 59.6
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 7.1e-140 501.9 686 44.0
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 7.4e-129 465.3 650 42.9
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 5.8e-126 455.7 728 37.2
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 5.6e-121 439.1 779 36.3
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 1.7e-117 427.6 525 45.9
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 3.2e-116 423.3 352 61.1
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 2.7e-115 420.2 692 37.4
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 1.2e-110 404.8 356 59.0
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 2.2e-96 357.5 496 43.5
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 5.7e-89 332.8 231 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 1.9e-84 317.8 847 30.3
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 6.5e-77 292.7 419 43.0
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 6.8e-66 256.1 356 42.7
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 6.3e-64 249.6 292 47.9
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 1.5e-60 238.4 233 50.2
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 3.4e-57 227.3 363 38.6
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 1.2e-54 218.8 177 62.1
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 5.2e-50 203.4 363 38.3
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 1.6e-46 191.8 402 33.1
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.8e-43 181.0 99 83.8
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 1.7e-40 171.8 150 52.0
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 6.4e-40 169.9 191 49.2
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 2.7e-30 137.9 152 51.3
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 4.7e-27 127.1 120 52.5
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 8.1e-27 126.3 111 55.0
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 8.1e-27 126.3 111 55.0
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.9e-23 115.2 78 67.9
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 7.8e-22 109.8 78 66.7
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 1.7e-21 108.6 88 61.4
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.0e-21 107.8 90 55.6
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 2.4e-18 98.2 96 51.0
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.0e-18 97.4 101 49.5
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 4.0e-18 97.4 101 49.5
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 3.5e-14 84.3 61 68.9
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 3.9e-13 80.9 149 39.6
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 2.5e-12 78.2 109 46.8
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 7.4e-12 76.6 48 72.9
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 1.6e-11 75.5 59 59.3
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 8.1e-11 73.2 68 51.5
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.1e-10 72.8 80 52.5
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 1.4e-10 72.4 153 32.0
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 2.4e-10 71.6 183 29.5
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 3.1e-10 71.2 62 51.6
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 5.3e-10 70.5 100 41.0
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 4.5e-09 67.4 59 52.5
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 1.3e-08 65.9 385 23.9
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 4.2e-07 60.8 49 55.1
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 7.1e-07 60.1 82 40.2
Hma1.2p1_0394F.1_g143320 Hydrangea macrophylla HOM05D001905 ORTHO05D001820 2.1e-06 58.5 182 29.1
SMO115G0078 Selaginella moellendorffii HOM05D001905 ORTHO05D001820 3.5e-06 57.8 152 31.6


User provided reference genes

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