Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040282 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.9e-306 1055.0 539 100.0
AUR62039972 Chenopodium quinoa HOM05D000001 ORTHO05D009942 1.1e-141 507.7 291 91.1
Ah.14g084030 Amaranthus hybridus HOM05D000001 ORTHO05D009942 1.3e-86 324.7 298 59.1
AUR62039974 Chenopodium quinoa HOM05D007179 ORTHO05D009124 1.9e-69 267.7 153 90.2
Hund08993 Selenicereus undatus HOM05D007179 ORTHO05D009124 2.7e-39 167.5 143 62.2
Ca_21187_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 3.6e-39 167.2 405 33.3
RcHm_v2.0_Chr5g0006011 Rosa chinensis HOM05D000001 ORTHO05D009942 1.5e-34 151.8 277 37.2
SalBow1G0390 Salvia bowleyana HOM05D007179 ORTHO05D009124 1.5e-34 151.8 132 59.8
Prupe.1G096000 Prunus persica HOM05D000001 ORTHO05D009942 3.8e-33 147.1 291 35.4
Hund26395 Selenicereus undatus HOM05D007179 ORTHO05D009124 8.5e-33 146.0 131 59.5
FAN11G1677 Fragaria x ananassa HOM05D000001 ORTHO05D009942 1.1e-32 145.6 303 36.0
FvH4_3g13180 Fragaria vesca HOM05D000001 ORTHO05D009942 1.9e-32 144.8 307 36.8
Dinv41297 Davidia involucrata HOM05D007179 ORTHO05D009124 2.5e-32 144.4 144 57.6
Nn1g04316 Nelumbo nucifera HOM05D007179 ORTHO05D009124 5.5e-32 143.3 92 75.0
TAR626G0641 Trochodendron aralioides HOM05D007179 ORTHO05D009124 5.5e-32 143.3 148 58.1
FAN16G0931 Fragaria x ananassa HOM05D000001 ORTHO05D009942 2.1e-31 141.4 297 36.4
FAN21G0240 Fragaria x ananassa HOM05D008511 ORTHO05D010691 2.1e-31 141.4 274 36.5
PGR102G1777 Punica granatum HOM05D007179 ORTHO05D009124 2.1e-31 141.4 133 58.6
FAN25G3648 Fragaria x ananassa HOM05D000001 ORTHO05D009942 6.1e-31 139.8 303 36.0
CiPaw.07G187200 Carya illinoinensis HOM05D007179 ORTHO05D009124 1.4e-30 138.7 145 55.9
EL10Ac8g18859 Beta vulgaris HOM05D007179 ORTHO05D009124 1.8e-30 138.3 83 83.1
MD13G1261300 Malus domestica HOM05D000001 ORTHO05D009942 3.0e-30 137.5 276 34.4
Lj6g0018090 Lotus japonicus HOM05D000001 ORTHO05D009942 4.0e-30 137.1 308 34.7
CANSAT11G0330 Cannabis sativa HOM05D007179 ORTHO05D009124 5.2e-30 136.7 148 55.4
Rhsim01G0010000 Rhododendron simsii HOM05D007179 ORTHO05D009124 8.8e-30 136.0 142 54.2
MBI15_g26085_MAGBIO Magnolia biondii HOM05D007179 ORTHO05D009124 2.6e-29 134.4 95 70.5
MSTRG.26242 Avicennia marina HOM05D007179 ORTHO05D009124 4.4e-29 133.7 144 55.6
CiPaw.08G039500 Carya illinoinensis HOM05D007179 ORTHO05D009124 5.7e-29 133.3 145 52.4
Potri.006G175600 Populus trichocarpa HOM05D007179 ORTHO05D009124 7.4e-29 132.9 92 75.0
GSVIVG01032307001 Vitis vinifera HOM05D007179 ORTHO05D009124 7.4e-29 132.9 143 53.8
TWI63G0613 Tripterygium wilfordii HOM05D007179 ORTHO05D009124 9.7e-29 132.5 148 54.1
CSS0047035 Camellia sinensis var. sinensis HOM05D007179 ORTHO05D009124 1.3e-28 132.1 118 60.2
Sc14g0001110 Simmondsia chinensis HOM05D007179 ORTHO05D009124 1.3e-28 132.1 128 55.5
QL02p095851 Quercus lobata HOM05D000001 ORTHO05D009942 1.7e-28 131.7 299 34.4
Cpa.g.c29666.1 Carica papaya HOM05D007179 ORTHO05D009124 2.2e-28 131.3 119 59.7
Cfa013541 Carpinus fangiana HOM05D000001 ORTHO05D009942 2.2e-28 131.3 248 37.9
Oeu058831.1 Olea europaea HOM05D007179 ORTHO05D009124 2.2e-28 131.3 91 70.3
Gorai.009G007600 Gossypium raimondii HOM05D007179 ORTHO05D009124 2.8e-28 131.0 134 58.2
Gohir.A05G006600 Gossypium hirsutum HOM05D007179 ORTHO05D009124 3.7e-28 130.6 134 58.2
Gohir.D05G007500 Gossypium hirsutum HOM05D007179 ORTHO05D009124 3.7e-28 130.6 134 58.2
Atru.chr7.533 Acer truncatum HOM05D007179 ORTHO05D009124 4.8e-28 130.2 92 69.6
Prupe.1G095600 Prunus persica HOM05D007179 ORTHO05D009124 6.3e-28 129.8 145 52.4
MD16G1263600 Malus domestica HOM05D007179 ORTHO05D009124 1.4e-27 128.6 146 52.7
Thecc.09G162500 Theobroma cacao HOM05D007179 ORTHO05D009124 1.8e-27 128.3 119 61.3
Aa31LG3G160 Aethionema arabicum HOM05D007179 ORTHO05D009124 2.4e-27 127.9 114 61.4
Migut.K00269 Erythranthe guttata HOM05D007179 ORTHO05D009124 3.1e-27 127.5 149 55.0
CANSAT01G1218 Cannabis sativa HOM05D000001 ORTHO05D009942 5.3e-27 126.7 245 34.7
Sabra06G0134300 Salix brachista HOM05D007179 ORTHO05D009124 5.3e-27 126.7 92 70.7
Sed0008122 Sechium edule HOM05D007179 ORTHO05D009124 9.1e-27 125.9 113 60.2
Eucgr.C02437 Eucalyptus grandis HOM05D007179 ORTHO05D009124 1.2e-26 125.6 92 68.5
Manes.06G029800 Manihot esculenta HOM05D007179 ORTHO05D009124 1.2e-26 125.6 142 53.5
Atru.chr7.517 Acer truncatum HOM05D000001 ORTHO05D009942 1.6e-26 125.2 275 34.9
PGSC0003DMG400027448 Solanum tuberosum HOM05D007179 ORTHO05D009124 1.6e-26 125.2 91 68.1
arahy.Tifrunner.gnm1.ann1.8TJD28 Arachis hypogaea HOM05D007179 ORTHO05D009124 2.6e-26 124.4 144 52.1
Sp7g25970 Schrenkiella parvula HOM05D007179 ORTHO05D009124 3.5e-26 124.0 134 53.0
Solyc07g006490.3 Solanum lycopersicum HOM05D007179 ORTHO05D009124 3.5e-26 124.0 91 67.0
Actinidia24032 Actinidia chinensis HOM05D007179 ORTHO05D009124 4.5e-26 123.6 142 51.4
arahy.Tifrunner.gnm1.ann1.7FN6WP Arachis hypogaea HOM05D007179 ORTHO05D009124 4.5e-26 123.6 144 52.1
Nn8g40269 Nelumbo nucifera HOM05D000001 ORTHO05D009942 4.5e-26 123.6 265 34.3
CiPaw.07G187100 Carya illinoinensis HOM05D000001 ORTHO05D009942 5.9e-26 123.2 313 31.6
Medtr4g129320 Medicago truncatula HOM05D007179 ORTHO05D009124 7.7e-26 122.9 92 67.4
Aqoxy7G03201 Aquilegia oxysepala HOM05D007179 ORTHO05D009124 1.0e-25 122.5 141 46.8
Nitab4.5_0011540g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 1.0e-25 122.5 91 68.1
vmacro13080 Vaccinium macrocarpon HOM05D007179 ORTHO05D009124 1.0e-25 122.5 83 74.7
BcaNung01603 Brassica carinata HOM05D007179 ORTHO05D009124 1.3e-25 122.1 128 54.7
CsaV3_2G008330 Cucumis sativus L. HOM05D007179 ORTHO05D009124 1.3e-25 122.1 153 50.3
Peaxi162Scf00457g00318 Petunia axillaris HOM05D007179 ORTHO05D009124 1.3e-25 122.1 91 67.0
Psat0s236g0160 Pisum sativum HOM05D007179 ORTHO05D009124 1.3e-25 122.1 135 51.9
RcHm_v2.0_Chr4g0404651 Rosa chinensis HOM05D007179 ORTHO05D009124 1.3e-25 122.1 91 70.3
Sopen07g002570 Solanum pennellii HOM05D007179 ORTHO05D009124 1.3e-25 122.1 91 65.9
THA.LOC104811817 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.3e-25 122.1 94 66.0
AL7G24590 Arabidopsis lyrata HOM05D007179 ORTHO05D009124 1.7e-25 121.7 100 63.0
COL.COLO4_16058 Corchorus olitorius HOM05D007179 ORTHO05D009124 1.7e-25 121.7 138 53.6
THA.LOC104817810 Tarenaya hassleriana HOM05D007179 ORTHO05D009124 1.7e-25 121.7 97 63.9
BolC7t46066H Brassica oleracea HOM05D007179 ORTHO05D009124 2.2e-25 121.3 136 52.2
C07p55870 Brassica napus HOM05D007179 ORTHO05D009124 2.9e-25 120.9 135 52.6
Ciclev10008915m.g Citrus clementina HOM05D000001 ORTHO05D009942 2.9e-25 120.9 272 33.5
Potri.018G097900 Populus trichocarpa HOM05D000001 ORTHO05D009942 2.9e-25 120.9 270 34.1
BraA03t14832Z Brassica rapa HOM05D007179 ORTHO05D009124 5.0e-25 120.2 134 51.5
Manes.08G144300 Manihot esculenta HOM05D000001 ORTHO05D009942 5.0e-25 120.2 308 31.2
AT4G28025 Arabidopsis thaliana HOM05D007179 ORTHO05D009124 6.5e-25 119.8 101 61.4
MELO3C004033.2 Cucumis melo HOM05D007179 ORTHO05D009124 6.5e-25 119.8 152 50.7
Lalb_Chr13g0300481 Lupinus albus HOM05D007179 ORTHO05D009124 6.5e-25 119.8 97 63.9
BraA01t01881Z Brassica rapa HOM05D007179 ORTHO05D009124 8.5e-25 119.4 100 62.0
Thhalv10026434m.g Eutrema salsugineum HOM05D007179 ORTHO05D009124 8.5e-25 119.4 101 64.4
Psat6g238680 Pisum sativum HOM05D000001 ORTHO05D009942 8.5e-25 119.4 303 32.3
A01p19410 Brassica napus HOM05D007179 ORTHO05D009124 1.1e-24 119.0 100 61.0
Lj4g0019685 Lotus japonicus HOM05D007179 ORTHO05D009124 1.1e-24 119.0 147 49.0
Nn2g12578 Nelumbo nucifera HOM05D000001 ORTHO05D009942 1.1e-24 119.0 271 33.2
BcaC06g32651 Brassica carinata HOM05D007179 ORTHO05D009124 1.5e-24 118.6 99 62.6
ClCG11G012230 Citrullus lanatus HOM05D007179 ORTHO05D009124 1.5e-24 118.6 86 69.8
ECA236G0374 Erigeron canadensis HOM05D007179 ORTHO05D009124 1.5e-24 118.6 120 54.2
A03p57660 Brassica napus HOM05D007179 ORTHO05D009124 1.9e-24 118.2 134 50.7
Sc08g0005400 Simmondsia chinensis HOM05D000001 ORTHO05D009942 1.9e-24 118.2 211 39.3
Carub.0007s1277 Capsella rubella HOM05D007179 ORTHO05D009124 2.5e-24 117.9 101 61.4
Duzib150G1658 Durio zibethinus HOM05D007179 ORTHO05D009124 3.2e-24 117.5 96 67.7
FvH4_4g08570 Fragaria vesca HOM05D007179 ORTHO05D009124 4.2e-24 117.1 91 68.1
Sabra18G0084600 Salix brachista HOM05D000001 ORTHO05D009942 4.2e-24 117.1 279 30.1
C01p24450 Brassica napus HOM05D007179 ORTHO05D009124 5.5e-24 116.7 100 61.0
BolC1t02394H Brassica oleracea HOM05D007179 ORTHO05D009124 5.5e-24 116.7 100 61.0
Phvul.001G010200 Phaseolus vulgaris HOM05D000001 ORTHO05D009942 5.5e-24 116.7 294 33.7
Cc06_g13840 Coffea canephora HOM05D007179 ORTHO05D009124 1.2e-23 115.5 129 53.5
HanXRQChr05g0136491 Helianthus annuus HOM05D007179 ORTHO05D009124 1.2e-23 115.5 89 62.9
Lsat_1_v5_gn_8_65641 Lactuca sativa HOM05D007179 ORTHO05D009124 1.6e-23 115.2 89 61.8
CDE02G2992 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 6.1e-23 113.2 141 46.8
PSO063G6628 Papaver somniferum HOM05D007179 ORTHO05D009124 8.0e-23 112.8 140 49.3
DCAR_017946 Daucus carota HOM05D007179 ORTHO05D009124 1.0e-22 112.5 81 72.8
Lj9A729T43 Lonicera japonica HOM05D007179 ORTHO05D009124 1.0e-22 112.5 140 47.1
FAN22G0121 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.8e-22 111.7 84 70.2
PSO782G3484 Papaver somniferum HOM05D007179 ORTHO05D009124 1.8e-22 111.7 141 48.9
Lj9P729T26 Lonicera japonica HOM05D000001 ORTHO05D009942 2.3e-22 111.3 296 33.4
Glyma.17G067900 Glycine max HOM05D007179 ORTHO05D009124 3.0e-22 110.9 118 55.1
BcaNung00139 Brassica carinata HOM05D000001 ORTHO05D009942 4.0e-22 110.5 280 32.9
CAN.G584.44 Capsicum annuum HOM05D007179 ORTHO05D009124 4.0e-22 110.5 80 70.0
Phvul.003G150500 Phaseolus vulgaris HOM05D007179 ORTHO05D009124 4.0e-22 110.5 83 69.9
Lj4g0010912 Lotus japonicus HOM05D000001 ORTHO05D009942 5.2e-22 110.2 240 37.1
Cpa.g.sc75.11 Carica papaya HOM05D000001 ORTHO05D009942 8.8e-22 109.4 298 32.9
BcaC09g50430 Brassica carinata HOM05D000001 ORTHO05D009942 2.0e-21 108.2 284 32.0
C01p25510 Brassica napus HOM05D000001 ORTHO05D009942 2.0e-21 108.2 284 32.0
BolC1t02502H Brassica oleracea HOM05D000001 ORTHO05D000003 2.0e-21 108.2 284 32.0
CDE05G2983 Ceratophyllum demersum HOM05D007179 ORTHO05D009124 2.0e-21 108.2 105 56.2
HPP92_018535 Vanilla planifolia HOM05D007179 ORTHO05D009124 2.6e-21 107.8 88 60.2
VMungo0647G1251 Vigna mungo HOM05D000001 ORTHO05D009942 2.6e-21 107.8 244 36.5
Actinidia24777 Actinidia chinensis HOM05D007179 ORTHO05D009124 4.4e-21 107.1 71 74.6
A01p20340 Brassica napus HOM05D000001 ORTHO05D009942 4.4e-21 107.1 284 31.7
CARHR235720 Cardamine hirsuta HOM05D007179 ORTHO05D009124 4.4e-21 107.1 101 57.4
unitig_37.g12688 Utricularia gibba HOM05D007179 ORTHO05D009124 5.7e-21 106.7 95 58.9
ATR0580G253 Amborella trichopoda HOM05D007179 ORTHO05D009124 7.5e-21 106.3 99 56.6
Thhalv10025772m.g Eutrema salsugineum HOM05D000001 ORTHO05D009942 7.5e-21 106.3 280 31.8
VMungo1215G3157 Vigna mungo HOM05D007179 ORTHO05D009124 7.5e-21 106.3 78 69.2
AT4G16850 Arabidopsis thaliana HOM05D000001 ORTHO05D009942 9.8e-21 105.9 280 31.8
MELO3C004032.2 Cucumis melo HOM05D000001 ORTHO05D009942 9.8e-21 105.9 293 31.1
Duzib187G0438 Durio zibethinus HOM05D000001 ORTHO05D009942 9.8e-21 105.9 298 27.9
Carub.0007s2447 Capsella rubella HOM05D000001 ORTHO05D009942 1.3e-20 105.5 299 31.1
FAN17G2417 Fragaria x ananassa HOM05D007179 ORTHO05D009124 1.3e-20 105.5 71 74.6
Aqoxy7G03211 Aquilegia oxysepala HOM05D000001 ORTHO05D009942 1.7e-20 105.1 281 29.2
Ciclev10009752m.g Citrus clementina HOM05D007179 ORTHO05D009124 1.7e-20 105.1 86 64.0
Aa31LG2G13040 Aethionema arabicum HOM05D000001 ORTHO05D009942 2.2e-20 104.8 280 30.7
AL7G37780 Arabidopsis lyrata HOM05D000001 ORTHO05D009942 2.2e-20 104.8 279 31.9
Glyma.14G069900 Glycine max HOM05D000001 ORTHO05D009942 2.2e-20 104.8 280 32.5
Nitab4.5_0002004g0010 Nicotiana tabacum HOM05D007179 ORTHO05D009124 2.8e-20 104.4 71 73.2
Lalb_Chr07g0180131 Lupinus albus HOM05D000001 ORTHO05D009942 3.7e-20 104.0 271 33.6
Glyma.13G092300 Glycine max HOM05D000001 ORTHO05D009942 1.1e-19 102.4 237 35.9
Duzib168G2157 Durio zibethinus HOM05D000001 ORTHO05D009942 1.4e-19 102.1 296 30.4
Thecc.09G162400 Theobroma cacao HOM05D000001 ORTHO05D009942 1.4e-19 102.1 244 32.0
VMungo1215G0291 Vigna mungo HOM05D000001 ORTHO05D009942 1.4e-19 102.1 279 34.8
BraA01t01964Z Brassica rapa HOM05D000001 ORTHO05D009942 1.8e-19 101.7 281 30.6
PGR004G0094 Punica granatum HOM05D000001 ORTHO05D009942 2.4e-19 101.3 272 32.0
CsaV3_1G004210 Cucumis sativus L. HOM05D000001 ORTHO05D009942 4.1e-19 100.5 293 29.7
Glyma.17G068100 Glycine max HOM05D000001 ORTHO05D009942 4.1e-19 100.5 243 35.0
Medtr1g116000 Medicago truncatula HOM05D000001 ORTHO05D009942 5.4e-19 100.1 258 31.8
ClCG11G012210 Citrullus lanatus HOM05D000001 ORTHO05D009942 9.1e-19 99.4 294 30.6
Sp7g17230 Schrenkiella parvula HOM05D000001 ORTHO05D009942 2.0e-18 98.2 280 30.7
Medtr4g129330 Medicago truncatula HOM05D000001 ORTHO05D009942 3.5e-18 97.4 287 32.1
Psat0s236g0120 Pisum sativum HOM05D000001 ORTHO05D009942 3.5e-18 97.4 227 33.5
THA.LOC104811819 Tarenaya hassleriana HOM05D000001 ORTHO05D009942 1.7e-17 95.1 256 32.8
Zm00001eb246810 Zea mays HOM05D007179 ORTHO05D009124 3.8e-17 94.0 133 46.6
Gohir.A05G006700 Gossypium hirsutum HOM05D000001 ORTHO05D009942 5.0e-17 93.6 240 32.5
Gohir.D05G007600 Gossypium hirsutum HOM05D000001 ORTHO05D009942 5.0e-17 93.6 262 30.5
Gorai.009G007700 Gossypium raimondii HOM05D000001 ORTHO05D009942 6.5e-17 93.2 262 30.5
MBI14_g08066_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009942 1.1e-16 92.4 297 29.3
Medtr4g129300 Medicago truncatula HOM05D007179 ORTHO05D009124 1.1e-16 92.4 89 58.4
Sed0013089 Sechium edule HOM05D000001 ORTHO05D009942 1.9e-16 91.7 239 31.4
SGA_v2.0_scaffold325G48698 Striga asiatica HOM05D007179 ORTHO05D009124 7.2e-16 89.7 72 63.9
AagrBONN_evm.TU.Sc2ySwM_362.2423 Anthoceros agrestis HOM05D007179 ORTHO05D009124 2.7e-15 87.8 92 47.8
Nn2g12580 Nelumbo nucifera HOM05D000001 ORTHO05D009942 2.7e-15 87.8 226 31.4
CAN.G584.60 Capsicum annuum HOM05D000001 ORTHO05D009942 6.1e-15 86.7 232 32.8
TPR.G10425 Trifolium pratense HOM05D000001 ORTHO05D009942 6.1e-15 86.7 171 35.7
SMO358G0032 Selaginella moellendorffii HOM05D007179 ORTHO05D009124 1.0e-14 85.9 88 48.9
arahy.Tifrunner.gnm1.ann1.HQFS40 Arachis hypogaea HOM05D000001 ORTHO05D009942 2.3e-14 84.7 232 33.2
Mapoly0124s0027 Marchantia polymorpha HOM05D007179 ORTHO05D009124 2.3e-14 84.7 74 54.1
Pp3c12_25950 Physcomitrium patens HOM05D007179 ORTHO05D009124 1.2e-13 82.4 80 46.2
Haze_22155 Corylus avellana HOM05D007179 ORTHO05D009124 5.7e-13 80.1 45 82.2
Ca_11326_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 9.8e-13 79.3 147 36.1
BcaC09g50519 Brassica carinata HOM05D000147 ORTHO05D013131 1.8e-11 75.1 58 60.3
ATR0580G034 Amborella trichopoda HOM05D000001 ORTHO05D009942 4.1e-11 73.9 227 30.8
TAR625G0513 Trochodendron aralioides HOM05D000001 ORTHO05D009942 2.7e-10 71.2 158 36.7
Solyc07g006410.1 Solanum lycopersicum HOM05D000001 ORTHO05D009942 5.9e-10 70.1 235 28.5
Haze_22156 Corylus avellana HOM05D007179 ORTHO05D009124 7.7e-10 69.7 98 45.9
Peaxi162Scf00457g00043 Petunia axillaris HOM05D000001 ORTHO05D009942 1.0e-09 69.3 128 35.9
Nitab4.5_0004017g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009942 2.3e-09 68.2 67 53.7
Ca_11327_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009942 6.6e-09 66.6 151 33.1
TWI32G0375 Tripterygium wilfordii HOM05D000001 ORTHO05D009942 2.5e-08 64.7 122 36.9
PGSC0003DMG400027446 Solanum tuberosum HOM05D000001 ORTHO05D009942 2.8e-07 61.2 55 54.5


User provided reference genes

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