Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.4e-46 186.8 92 100.0
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.2e-29 132.1 92 73.9
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 2.6e-22 108.6 90 61.1
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 5.7e-22 107.5 90 57.8
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 1.3e-21 106.3 90 57.8
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 3.7e-21 104.8 90 54.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.1e-20 103.2 90 57.8
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 1.8e-20 102.4 90 52.2
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 1.8e-20 102.4 90 55.6
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.4e-20 102.1 92 52.2
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.4e-20 102.1 92 52.2
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.4e-20 102.1 92 52.2
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 4.1e-20 101.3 90 57.8
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 5.4e-20 100.9 90 56.7
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 5.4e-20 100.9 90 53.3
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 7.0e-20 100.5 90 54.4
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-19 99.8 90 54.4
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 1.6e-19 99.4 90 53.3
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 2.0e-19 99.0 90 55.6
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 2.7e-19 98.6 90 53.3
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 4.5e-19 97.8 90 54.4
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 5.9e-19 97.4 90 54.4
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 5.9e-19 97.4 91 50.5
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 7.7e-19 97.1 90 53.3
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 7.7e-19 97.1 92 48.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 7.7e-19 97.1 91 50.5
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 1.0e-18 96.7 92 55.4
AUR62037909 Chenopodium quinoa HOM05D006242 ORTHO05D007936 1.0e-18 96.7 54 87.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.0e-18 96.7 90 53.3
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 1.3e-18 96.3 90 53.3
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 2.2e-18 95.5 92 52.2
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.2e-18 95.5 90 53.3
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 2.9e-18 95.1 90 50.0
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 2.9e-18 95.1 90 53.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 2.9e-18 95.1 90 53.3
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 5.0e-18 94.4 92 52.2
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 5.0e-18 94.4 92 52.2
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 6.5e-18 94.0 92 51.1
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 6.5e-18 94.0 90 51.1
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 8.5e-18 93.6 92 52.2
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 8.5e-18 93.6 90 51.1
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.1e-17 93.2 90 54.4
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.9e-17 92.4 92 52.2
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 1.9e-17 92.4 90 51.1
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.9e-17 92.4 90 51.1
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 2.5e-17 92.0 92 53.3
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 2.5e-17 92.0 92 51.1
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 2.5e-17 92.0 90 51.1
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 2.5e-17 92.0 90 53.3
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 3.2e-17 91.7 92 53.3
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 3.2e-17 91.7 90 48.9
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 3.2e-17 91.7 90 50.0
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 3.2e-17 91.7 90 53.3
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 5.5e-17 90.9 97 49.5
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.6e-16 89.4 109 43.1
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 2.1e-16 89.0 95 48.4
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 2.1e-16 89.0 90 48.9
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 2.1e-16 89.0 94 48.9
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 2.8e-16 88.6 91 50.5
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 2.8e-16 88.6 94 51.1
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 3.6e-16 88.2 91 52.7
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 4.7e-16 87.8 83 55.4
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 4.7e-16 87.8 90 52.2
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 6.1e-16 87.4 90 51.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.0e-15 86.7 90 50.0
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.0e-15 86.7 90 46.7
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 1.0e-15 86.7 90 48.9
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.4e-15 86.3 92 50.0
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 1.8e-15 85.9 91 50.5
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 2.3e-15 85.5 91 49.5
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 5.2e-15 84.3 92 50.0
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 5.2e-15 84.3 91 50.5
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 6.8e-15 84.0 90 51.1
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 8.8e-15 83.6 89 50.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.2e-14 83.2 92 48.9
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 2.0e-14 82.4 91 46.2
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 2.6e-14 82.0 90 47.8
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 5.7e-14 80.9 91 46.2
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 7.5e-14 80.5 91 47.3
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 9.8e-14 80.1 90 46.7
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 1.3e-13 79.7 94 47.9
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-13 79.3 90 45.6
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 3.7e-13 78.2 92 44.6
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 4.9e-13 77.8 91 44.0
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 2.4e-12 75.5 91 46.2
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 7.0e-12 73.9 96 41.7
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 4.5e-11 71.2 90 41.1
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.0e-10 70.1 95 46.3
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 1.3e-10 69.7 90 42.2
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 1.7e-10 69.3 91 40.7
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 2.3e-10 68.9 92 42.4
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 6.6e-10 67.4 91 41.8
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 2.5e-09 65.5 47 59.6
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.6e-08 62.8 54 57.4
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 4.4e-06 54.7 47 55.3
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 5.7e-06 54.3 54 50.0


User provided reference genes

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