Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 5.2e-113 411.4 258 100.0
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 9.2e-94 347.4 259 75.3
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 6.9e-57 224.9 265 52.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 3.0e-44 183.0 277 55.2
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 6.1e-37 158.7 257 42.4
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 4.3e-35 152.5 257 49.8
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 4.3e-35 152.5 257 42.8
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.4e-35 151.8 257 41.6
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 7.4e-35 151.8 257 41.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 9.7e-35 151.4 259 42.9
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 2.4e-33 146.7 256 40.2
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 2.4e-33 146.7 270 43.0
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 3.1e-33 146.4 262 50.0
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 5.3e-33 145.6 207 51.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 5.3e-33 145.6 244 50.0
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.5e-32 144.1 262 44.7
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.5e-32 144.1 280 46.1
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 2.6e-32 143.3 261 44.4
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 5.9e-32 142.1 252 51.2
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 6.5e-31 138.7 255 48.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 8.5e-31 138.3 277 45.8
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 2.5e-30 136.7 176 63.1
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 2.5e-30 136.7 255 38.4
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 4.2e-30 136.0 79 79.7
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 4.2e-30 136.0 265 39.6
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 9.4e-30 134.8 281 48.4
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.6e-29 134.0 280 48.6
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.1e-29 133.7 240 43.3
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 2.1e-29 133.7 252 46.8
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.1e-29 133.7 259 42.1
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 2.7e-29 133.3 277 49.5
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.7e-29 133.3 259 52.9
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 3.6e-29 132.9 79 73.4
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 3.6e-29 132.9 84 75.0
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.7e-29 132.5 263 43.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 6.1e-29 132.1 89 71.9
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 7.9e-29 131.7 186 58.6
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.0e-28 131.3 95 64.2
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.0e-28 131.3 260 46.5
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.4e-28 131.0 90 67.8
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.4e-28 131.0 102 63.7
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.4e-28 131.0 94 64.9
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 1.8e-28 130.6 91 67.0
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.8e-28 130.6 266 39.8
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 3.0e-28 129.8 240 42.9
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.9e-28 129.4 259 38.6
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 6.7e-28 128.6 197 40.6
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 6.7e-28 128.6 217 46.5
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 6.7e-28 128.6 257 47.1
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 8.8e-28 128.3 178 44.4
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 8.8e-28 128.3 94 63.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 8.8e-28 128.3 258 39.1
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.1e-27 127.9 111 58.6
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.5e-27 127.5 86 66.3
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.5e-27 127.5 102 61.8
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.5e-27 127.5 82 72.0
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.5e-27 127.5 260 38.5
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.5e-27 127.5 211 42.2
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.6e-27 126.7 82 70.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 2.6e-27 126.7 79 73.4
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 3.3e-27 126.3 262 44.3
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.3e-27 126.3 260 41.2
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 3.3e-27 126.3 269 36.4
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 3.3e-27 126.3 262 43.1
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 3.3e-27 126.3 88 67.0
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 4.4e-27 125.9 256 38.3
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 4.4e-27 125.9 274 36.1
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 5.7e-27 125.6 100 60.0
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 5.7e-27 125.6 86 68.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 7.4e-27 125.2 258 37.2
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-26 124.4 105 60.0
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.3e-26 124.4 267 37.5
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 1.3e-26 124.4 265 37.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.7e-26 124.0 238 45.8
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 2.2e-26 123.6 95 62.1
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 2.2e-26 123.6 204 41.7
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 2.8e-26 123.2 104 60.6
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 2.8e-26 123.2 82 68.3
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 3.7e-26 122.9 97 61.9
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 3.7e-26 122.9 97 61.9
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 3.7e-26 122.9 97 61.9
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-26 122.9 91 64.8
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 3.7e-26 122.9 238 37.8
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.1e-25 121.3 100 58.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 1.1e-25 121.3 89 64.0
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-25 120.9 83 66.3
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.4e-25 120.9 83 66.3
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.4e-25 120.9 262 36.3
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.4e-25 120.9 110 54.5
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.4e-25 120.2 255 48.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 3.1e-25 119.8 83 65.1
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.1e-25 119.8 102 58.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 4.1e-25 119.4 86 66.3
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 5.3e-25 119.0 76 71.1
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 5.3e-25 119.0 243 45.7
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 7.0e-25 118.6 85 63.5
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 7.0e-25 118.6 92 65.2
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 7.0e-25 118.6 105 55.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 7.0e-25 118.6 253 38.7
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 7.0e-25 118.6 259 39.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 9.1e-25 118.2 97 59.8
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 9.1e-25 118.2 71 77.5
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.2e-24 117.9 99 62.6
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.6e-24 117.5 225 40.0
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.6e-24 117.5 194 47.9
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 2.0e-24 117.1 281 47.0
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.6e-24 116.7 74 70.3
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.6e-24 116.7 258 38.0
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 7.7e-24 115.2 261 42.5
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 1.3e-23 114.4 84 60.7
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.7e-23 114.0 264 35.2
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 2.9e-23 113.2 221 40.3
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.0e-23 112.5 80 62.5
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 5.0e-23 112.5 97 52.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 5.0e-23 112.5 80 70.0
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.5e-23 112.1 242 43.4
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 6.5e-23 112.1 265 36.6
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-22 111.3 95 58.9
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.1e-22 111.3 95 58.9
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.5e-22 110.9 88 63.6
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.2e-22 109.4 68 70.6
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 4.2e-22 109.4 78 64.1
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 5.5e-22 109.0 100 54.0
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.2e-21 107.8 78 66.7
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.6e-21 107.5 101 55.4
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 2.7e-21 106.7 260 41.9
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 2.7e-21 106.7 101 55.4
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 3.6e-21 106.3 86 58.1
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 1.8e-20 104.0 79 60.8
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.3e-20 103.6 97 52.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 5.2e-20 102.4 78 57.7
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 7.5e-19 98.6 77 58.4
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 9.7e-19 98.2 97 51.5
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 8.2e-18 95.1 77 58.4
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.8e-17 94.0 97 50.5
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.8e-17 94.0 97 50.5
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 7.0e-17 92.0 97 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 1.9e-14 84.0 80 51.2
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 4.1e-09 66.2 41 65.9
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.6e-08 64.3 216 36.6
AT1G52270 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.2e-06 56.6 41 56.1


User provided reference genes

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