Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.9e-127 459.1 224 100.0
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.5e-124 448.7 224 97.3
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.3e-91 340.1 211 79.6
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.8e-90 336.3 224 72.8
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 4.1e-90 335.1 224 72.8
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.0e-89 332.8 217 73.3
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.0e-88 330.5 224 73.2
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 2.3e-88 329.3 224 72.3
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 8.6e-88 327.4 223 71.3
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 7.3e-87 324.3 218 71.6
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 9.5e-87 323.9 224 70.5
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 8.0e-86 320.9 217 71.0
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 8.0e-86 320.9 211 71.1
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-85 320.1 215 69.3
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.8e-85 319.7 218 71.6
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.3e-85 319.3 224 70.5
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 5.2e-85 318.2 213 70.0
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 5.2e-85 318.2 215 72.1
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 5.2e-85 318.2 224 69.6
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 6.8e-85 317.8 222 70.3
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.2e-84 317.0 218 72.0
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.5e-84 316.6 213 69.5
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.5e-84 316.6 213 69.5
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 4.4e-84 315.1 224 67.9
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 7.5e-84 314.3 218 69.7
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 9.8e-84 313.9 220 69.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.3e-83 313.5 171 87.7
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.3e-83 313.5 224 69.2
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.2e-83 312.8 221 67.9
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.2e-83 312.8 218 68.8
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 3.7e-83 312.0 213 68.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 3.7e-83 312.0 212 69.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 3.7e-83 312.0 218 67.4
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 3.7e-83 312.0 221 69.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 3.7e-83 312.0 218 69.3
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 6.4e-83 311.2 211 68.7
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 6.4e-83 311.2 213 68.5
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 8.3e-83 310.8 212 68.4
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 8.3e-83 310.8 212 68.4
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.1e-82 310.5 212 68.4
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 3.2e-82 308.9 219 67.6
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 3.2e-82 308.9 213 69.0
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 3.2e-82 308.9 221 67.9
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.2e-82 308.9 222 68.5
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 4.1e-82 308.5 218 68.3
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.1e-82 308.5 219 68.5
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 5.4e-82 308.1 213 69.5
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 5.4e-82 308.1 213 69.0
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 9.2e-82 307.4 221 68.3
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-81 307.0 219 68.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.6e-81 306.6 221 68.8
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.6e-81 306.6 224 66.5
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.0e-81 306.2 219 66.7
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.0e-81 306.2 223 68.2
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.7e-81 305.8 217 67.7
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.5e-81 305.4 219 68.5
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 67.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 67.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 67.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 67.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 2.3e-80 302.8 220 67.7
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 3.0e-80 302.4 221 66.5
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 3.9e-80 302.0 219 65.3
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 3.9e-80 302.0 214 68.2
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 8.6e-80 300.8 215 67.9
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 5.6e-79 298.1 218 66.5
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.2e-78 297.0 221 66.1
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 4.7e-78 295.0 219 65.8
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 1.0e-77 293.9 221 65.2
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.4e-77 293.5 219 67.1
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.4e-77 293.5 213 65.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 2.3e-77 292.7 220 65.9
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.4e-76 288.9 219 65.8
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.4e-76 288.9 219 65.8
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 5.8e-76 288.1 215 65.6
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 2.9e-75 285.8 214 65.4
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 3.7e-75 285.4 213 64.8
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 1.1e-74 283.9 220 62.3
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 9.2e-74 280.8 216 63.0
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 9.2e-74 280.8 216 63.0
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 2.7e-73 279.3 218 62.8
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 4.6e-73 278.5 219 64.4
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 7.8e-73 277.7 226 61.5
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 7.8e-73 277.7 223 62.3
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 7.8e-73 277.7 206 64.1
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.0e-72 277.3 218 62.4
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 1.0e-72 277.3 220 63.2
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 6.6e-72 274.6 218 62.4
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 3.3e-71 272.3 221 62.4
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 4.3e-71 271.9 218 60.6
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 1.2e-70 270.4 217 62.2
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 2.1e-70 269.6 223 60.5
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.6e-70 268.9 223 60.1
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 4.7e-70 268.5 216 63.0
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 8.1e-70 267.7 213 61.0
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 8.1e-70 267.7 213 61.0
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 8.1e-70 267.7 223 60.1
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 4.0e-69 265.4 215 59.1
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 6.8e-69 264.6 221 60.6
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 8.9e-69 264.2 214 61.7
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 8.9e-69 264.2 218 61.0
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.2e-68 263.8 189 67.2
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 1.2e-68 263.8 215 59.1
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 1.2e-68 263.8 218 61.9
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 2.6e-68 262.7 214 61.7
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 3.4e-68 262.3 217 60.8
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.4e-68 261.9 218 60.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.4e-68 261.9 218 60.1
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 3.7e-67 258.8 215 60.9
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 4.9e-67 258.5 221 60.6
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.1e-66 255.4 218 59.2
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 7.1e-66 254.6 216 56.0
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 1.3e-64 250.4 221 57.9
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 5.1e-64 248.4 221 57.9
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.6e-62 242.3 211 57.3
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 4.7e-62 241.9 217 55.8
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 8.9e-61 237.7 226 54.9
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 1.5e-60 236.9 224 54.0
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 9.9e-60 234.2 170 67.1
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 7.1e-58 228.0 212 51.4
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 9.2e-58 227.6 167 67.1
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 9.2e-58 227.6 165 66.7
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 2.3e-56 223.0 213 51.2
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.3e-55 219.2 166 64.5
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 5.6e-55 218.4 142 70.4
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 6.8e-53 211.5 160 65.0
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 3.8e-51 205.7 213 52.1
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.1e-50 204.1 214 52.8
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 7.1e-50 201.4 218 50.5
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 9.9e-44 181.0 135 64.4
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 6.4e-43 178.3 226 46.9
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 5.4e-42 175.3 129 62.8
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.0e-40 171.0 136 58.8
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.3e-38 164.1 214 45.8
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 3.4e-36 156.0 132 56.8
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 9.0e-29 131.3 91 69.2
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 1.2e-28 131.0 96 65.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 5.8e-28 128.6 96 65.6
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.5e-15 87.4 208 33.2
Manes.02G096600 Manihot esculenta HOM05D003144 ORTHO05D003539 1.6e-09 67.4 161 29.8
VMungo1215G0425 Vigna mungo HOM05D003144 ORTHO05D003539 1.8e-08 63.9 178 29.2
Lj4A205T21 Lonicera japonica HOM05D003144 ORTHO05D003539 1.1e-07 61.2 139 33.1
Phvul.002G033600 Phaseolus vulgaris HOM05D003144 ORTHO05D003539 1.1e-07 61.2 183 31.1
HanXRQChr16g0530671 Helianthus annuus HOM05D003144 ORTHO05D003539 1.5e-07 60.8 152 30.9
Aqoxy1G03997 Aquilegia oxysepala HOM05D003144 ORTHO05D003539 2.6e-07 60.1 125 30.4
PSO339G2437 Papaver somniferum HOM05D003144 ORTHO05D003539 2.6e-07 60.1 148 29.1
Psat4g094920 Pisum sativum HOM05D003144 ORTHO05D003539 2.6e-07 60.1 149 28.9
QL06p047123 Quercus lobata HOM05D003144 ORTHO05D003539 2.6e-07 60.1 123 32.5
Lsat_1_v5_gn_3_75940 Lactuca sativa HOM05D003144 ORTHO05D003539 3.3e-07 59.7 131 30.5
PSO675G6275 Papaver somniferum HOM05D003144 ORTHO05D003539 3.3e-07 59.7 162 29.0
Cfa004341 Carpinus fangiana HOM05D003144 ORTHO05D003539 4.4e-07 59.3 135 32.6
Haze_15060 Corylus avellana HOM05D003144 ORTHO05D003539 4.4e-07 59.3 135 32.6
HanXRQChr16g0530661 Helianthus annuus HOM05D003144 ORTHO05D003539 4.4e-07 59.3 139 31.7
PSO541G6245 Papaver somniferum HOM05D003144 ORTHO05D003539 4.4e-07 59.3 137 31.4
PSO675G8035 Papaver somniferum HOM05D003144 ORTHO05D003539 4.4e-07 59.3 137 32.1
CANSAT01G2043 Cannabis sativa HOM05D003144 ORTHO05D003539 5.7e-07 58.9 146 28.8
Lalb_Chr05g0212641 Lupinus albus HOM05D003144 ORTHO05D003539 5.7e-07 58.9 149 30.2
PRCOL_00003536 Prasinoderma coloniale HOM05D003144 ORTHO05D003539 5.7e-07 58.9 134 29.1
Sabra07G0018700 Salix brachista HOM05D003144 ORTHO05D003539 5.7e-07 58.9 124 29.8
AUR62004088 Chenopodium quinoa HOM05D003144 ORTHO05D003539 7.4e-07 58.5 140 30.7
Medtr8g077120 Medicago truncatula HOM05D003144 ORTHO05D003539 7.4e-07 58.5 133 28.6
RcHm_v2.0_Chr2g0100911 Rosa chinensis HOM05D003144 ORTHO05D003539 7.4e-07 58.5 137 30.7
Sabra05G0099200 Salix brachista HOM05D003144 ORTHO05D003539 7.4e-07 58.5 187 28.3
Glyma.11G071400 Glycine max HOM05D003144 ORTHO05D003539 9.7e-07 58.2 144 29.2
Nn1g04916 Nelumbo nucifera HOM05D003144 ORTHO05D003539 9.7e-07 58.2 158 28.5
PGR102G0163 Punica granatum HOM05D003144 ORTHO05D003539 9.7e-07 58.2 138 30.4
Migut.H02525 Erythranthe guttata HOM05D003144 ORTHO05D003539 1.3e-06 57.8 135 28.9
PSO541G4762 Papaver somniferum HOM05D003144 ORTHO05D003539 1.3e-06 57.8 137 30.7
Lj4g0005388 Lotus japonicus HOM05D003144 ORTHO05D003539 1.7e-06 57.4 140 28.6
AUR62004087 Chenopodium quinoa HOM05D003144 ORTHO05D003539 2.2e-06 57.0 154 26.6
FvH4_1g12790 Fragaria vesca HOM05D003144 ORTHO05D003539 2.8e-06 56.6 137 29.2
HanXRQChr14g0440521 Helianthus annuus HOM05D003144 ORTHO05D003539 2.8e-06 56.6 112 32.1
Medtr8g077115 Medicago truncatula HOM05D003144 ORTHO05D003539 3.7e-06 56.2 140 29.3
Potri.007G021600 Populus trichocarpa HOM05D003144 ORTHO05D003539 3.7e-06 56.2 130 30.8
TWI09G1569 Tripterygium wilfordii HOM05D003144 ORTHO05D003539 3.7e-06 56.2 137 27.0
TAR628G0922 Trochodendron aralioides HOM05D003144 ORTHO05D003539 3.7e-06 56.2 140 29.3
FAN26G2828 Fragaria x ananassa HOM05D003144 ORTHO05D003539 4.8e-06 55.8 140 28.6
PSO675G7033 Papaver somniferum HOM05D003144 ORTHO05D003539 4.8e-06 55.8 136 30.9
Potri.005G120400 Populus trichocarpa HOM05D003144 ORTHO05D003539 4.8e-06 55.8 130 30.8
FAN23G2566 Fragaria x ananassa HOM05D003144 ORTHO05D003539 8.2e-06 55.1 153 29.4


User provided reference genes

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