Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 4.5e-197 691.0 344 100.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.2e-182 641.7 339 93.5
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 9.3e-150 533.9 339 75.8
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.6e-149 533.1 353 75.9
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 2.7e-149 532.3 329 76.3
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.9e-148 528.5 339 75.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 5.1e-148 528.1 329 76.3
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.5e-147 526.6 329 76.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.9e-147 526.2 329 76.6
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.3e-147 525.4 329 75.7
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.3e-146 523.5 330 75.5
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.1e-146 522.7 329 75.1
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.1e-146 522.7 332 74.1
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 8.1e-146 520.8 338 74.0
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 8.1e-146 520.8 338 74.3
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.4e-145 520.0 338 74.6
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.4e-145 519.2 338 74.3
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.4e-145 519.2 338 74.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 9.0e-145 517.3 331 73.4
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.2e-144 516.9 338 73.7
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 2.6e-144 515.8 338 74.6
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 4.4e-144 515.0 339 73.5
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 5.8e-144 514.6 339 73.2
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 9.9e-144 513.8 339 72.9
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.9e-143 512.3 330 74.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 8.4e-143 510.8 338 72.2
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.1e-142 510.4 338 72.2
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.4e-142 510.0 339 72.3
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.4e-142 510.0 331 75.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 1.4e-142 510.0 338 72.2
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.4e-142 509.2 338 72.5
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 4.2e-142 508.4 338 71.9
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 5.4e-142 508.1 338 72.2
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 5.4e-142 508.1 339 72.3
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 7.1e-142 507.7 331 75.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 1.2e-141 506.9 338 72.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.5e-141 505.4 338 72.2
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 6.0e-141 504.6 328 73.2
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 7.9e-141 504.2 338 71.9
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 7.9e-141 504.2 338 71.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-140 503.8 339 72.9
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.3e-140 503.4 338 71.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.3e-140 503.4 304 80.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.7e-140 503.1 339 71.7
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 3.0e-140 502.3 338 71.6
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 3.0e-140 502.3 376 66.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 8.7e-140 500.7 338 71.3
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-139 500.0 329 73.6
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.3e-139 498.8 338 71.0
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 4.3e-139 498.4 338 71.3
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.3e-139 498.4 340 70.6
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 5.6e-139 498.0 329 73.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 5.6e-139 498.0 338 71.3
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 7.3e-139 497.7 391 65.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.3e-138 496.9 341 71.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.6e-138 496.5 338 69.8
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.6e-138 496.5 329 72.3
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.8e-138 495.7 329 71.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 3.6e-138 495.4 338 71.6
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 4.8e-138 495.0 329 71.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.8e-138 495.0 329 71.7
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.8e-138 495.0 329 71.7
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 8.1e-138 494.2 329 71.7
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 1.1e-137 493.8 338 69.8
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.4e-137 493.4 338 70.4
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 1.8e-137 493.0 341 71.0
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.1e-137 492.3 338 69.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 4.0e-137 491.9 338 69.8
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 6.9e-137 491.1 338 69.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 9.0e-137 490.7 351 67.2
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 9.0e-137 490.7 338 69.8
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.2e-136 490.3 329 71.4
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 2.0e-136 489.6 338 69.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 5.8e-136 488.0 338 70.7
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 7.6e-136 487.6 338 70.7
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 7.6e-136 487.6 338 68.6
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 6.4e-135 484.6 338 70.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 6.4e-135 484.6 338 70.1
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 8.4e-135 484.2 329 69.3
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.4e-134 482.6 321 71.7
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.2e-134 482.3 338 68.9
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 1.6e-133 479.9 362 66.3
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 2.7e-133 479.2 322 71.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.0e-132 475.7 327 69.4
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 3.9e-132 475.3 327 69.4
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 5.1e-132 474.9 340 69.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.4e-128 462.2 346 65.3
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.9e-127 459.1 313 70.6
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 8.4e-127 457.6 329 65.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 8.4e-127 457.6 374 63.9
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 1.4e-126 456.8 304 73.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.5e-125 452.2 370 61.1
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.1e-122 443.0 325 66.2
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 9.0e-121 437.6 295 71.5
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.6e-120 434.5 338 64.2
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.3e-119 433.7 338 62.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.4e-118 430.3 330 65.8
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 1.2e-117 427.2 332 62.0
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.0e-116 424.1 331 60.1
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.6e-114 416.8 337 59.6
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 8.2e-114 414.5 331 60.4
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.4e-110 403.7 331 63.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 1.8e-108 396.7 277 70.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 4.1e-105 385.6 275 67.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.9e-104 381.7 255 72.9
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 5.9e-104 381.7 256 72.7
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 4.5e-96 355.5 323 52.9
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.7e-90 337.0 224 73.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 3.1e-89 332.8 273 63.0
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 4.1e-89 332.4 228 71.1
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.2e-88 330.9 221 73.3
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.4e-81 307.4 345 47.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 3.5e-80 302.8 277 54.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 8.5e-79 298.1 196 72.4
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 4.5e-72 275.8 342 43.3
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.9e-70 270.4 322 44.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 9.2e-57 224.9 165 60.6
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.3e-54 216.5 177 59.3
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.2e-45 188.0 118 72.9
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-43 180.3 167 54.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.7e-42 176.4 332 33.4
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 7.8e-40 168.7 110 70.0
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-38 163.7 179 55.3
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.5e-27 127.9 87 73.6
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 9.3e-25 118.6 92 64.1
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.6e-24 117.9 89 59.6
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.6e-24 116.3 358 30.4
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.7e-23 114.4 95 64.2
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 7.6e-19 99.0 64 64.1
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 6.0e-16 89.4 87 57.5
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 3.7e-13 80.1 54 66.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 1.2e-08 65.1 49 67.3
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 7.9e-08 62.4 47 57.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.8e-07 61.2 47 61.7


User provided reference genes

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