Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.4e-243 845.1 433 100.0
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.0e-226 788.9 420 94.5
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 6.1e-183 644.4 406 82.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 3.0e-174 615.5 391 79.0
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.9e-169 599.0 408 74.8
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 9.5e-168 594.0 385 77.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.1e-163 580.5 385 76.4
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.4e-163 580.1 391 75.4
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 4.1e-163 578.6 385 75.8
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.2e-162 577.0 349 82.2
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 1.6e-162 576.6 349 80.5
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.0e-162 576.2 346 81.2
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 6.0e-162 574.7 384 75.8
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 1.0e-161 573.9 385 76.1
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.0e-161 573.9 385 76.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.3e-161 573.5 385 75.6
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.3e-161 572.8 350 80.3
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 3.0e-161 572.4 350 79.7
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.9e-161 572.0 385 75.3
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 3.9e-161 572.0 391 73.9
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 5.0e-161 571.6 386 74.6
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 5.0e-161 571.6 370 76.8
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 6.6e-161 571.2 351 80.1
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 6.6e-161 571.2 391 73.9
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 8.6e-161 570.9 385 74.8
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.1e-160 570.5 392 74.5
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.3e-160 568.9 351 80.3
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.6e-160 568.2 374 75.7
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 7.3e-160 567.8 361 77.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.6e-159 566.6 385 74.5
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.6e-159 565.5 350 78.9
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 6.2e-159 564.7 346 80.3
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.1e-158 563.9 377 75.6
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-158 563.5 352 79.8
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.3e-158 562.8 359 77.2
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 2.3e-158 562.8 387 73.9
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.1e-158 562.4 352 79.5
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.8e-158 561.2 395 72.7
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 6.8e-158 561.2 382 72.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.2e-157 560.5 395 72.7
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 3.4e-157 558.9 395 72.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.4e-157 558.5 392 72.7
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 7.5e-157 557.8 346 78.9
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.5e-157 557.8 394 73.4
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 7.5e-157 557.8 350 78.6
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 9.8e-157 557.4 374 74.3
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 9.8e-157 557.4 377 74.0
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 9.8e-157 557.4 397 72.8
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.3e-156 557.0 385 74.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.7e-156 556.6 350 77.4
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.2e-156 556.2 391 72.1
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.9e-156 555.8 375 72.3
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.9e-156 555.8 352 78.4
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 3.7e-156 555.4 362 75.7
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 3.2e-155 552.4 395 71.9
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 5.4e-155 551.6 348 78.2
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.2e-154 550.4 400 70.8
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 2.1e-154 549.7 387 71.3
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.1e-154 549.7 372 73.9
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 6.0e-154 548.1 350 77.4
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 7.8e-154 547.7 351 75.8
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.3e-153 547.0 383 72.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.1e-152 543.9 384 72.4
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.5e-152 543.5 384 72.4
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.9e-152 543.1 370 74.1
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.9e-152 543.1 424 66.7
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 2.5e-152 542.7 372 74.2
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 2.5e-152 542.7 372 74.2
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 4.3e-152 542.0 372 72.3
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 5.6e-152 541.6 370 73.0
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.2e-151 540.4 346 76.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.2e-151 540.4 370 73.0
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.6e-151 540.0 375 73.9
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.8e-151 539.3 346 76.0
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 2.8e-151 539.3 387 69.8
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 4.7e-151 538.5 414 67.6
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 4.7e-151 538.5 362 72.4
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 4.7e-151 538.5 391 70.3
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.1e-150 537.3 354 73.7
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 5.2e-150 535.0 375 73.3
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.5e-149 533.5 348 74.7
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 4.4e-149 531.9 384 70.3
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.9e-148 529.3 380 72.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 4.1e-147 525.4 351 74.6
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 4.6e-146 521.9 392 71.7
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 6.0e-146 521.5 354 72.9
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-140 502.7 304 80.3
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 5.4e-139 498.4 336 76.2
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.4e-139 498.4 342 73.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 7.1e-139 498.0 343 70.0
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 6.0e-138 495.0 322 75.8
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 4.3e-136 488.8 357 67.2
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 6.2e-135 485.0 361 68.7
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.1e-135 484.6 364 64.8
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 3.1e-134 482.6 381 67.2
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.6e-133 479.6 532 51.7
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.2e-132 476.5 392 61.5
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 3.0e-129 466.1 376 63.6
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.1e-128 464.2 301 77.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 9.6e-128 461.1 362 61.0
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.3e-127 460.7 356 63.5
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 2.8e-127 459.5 287 77.4
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.1e-122 443.4 300 71.0
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 2.3e-121 439.9 336 64.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.9e-120 436.8 313 71.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 6.2e-119 431.8 354 65.3
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.7e-116 423.7 308 67.9
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.7e-113 411.8 279 73.8
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 3.5e-106 389.4 344 54.4
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 5.1e-105 385.6 244 77.5
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.4e-102 377.5 320 60.0
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 1.1e-99 367.9 318 61.0
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 5.7e-96 355.5 228 75.9
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 1.4e-91 340.9 375 49.6
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 1.2e-77 294.7 365 43.8
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.7e-76 290.8 355 44.5
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.5e-61 239.6 255 49.8
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-58 231.5 266 53.4
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 8.6e-52 208.8 143 74.8
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.2e-50 204.9 162 65.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 4.6e-45 186.4 124 66.9
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-44 185.3 167 57.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.3e-41 174.1 290 35.2
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 8.6e-36 155.6 142 62.7
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.1e-30 138.7 83 78.3
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 4.3e-27 126.7 77 77.9
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 5.6e-27 126.3 105 64.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.6e-26 124.8 83 72.3
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.2e-26 122.9 373 30.0
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.2e-24 118.6 95 67.4
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.5e-19 101.7 106 56.6
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.9e-19 101.3 64 70.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 2.4e-14 84.3 70 62.9
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 6.0e-13 79.7 82 61.0
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 6.0e-13 79.7 49 75.5
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.0e-12 77.4 68 57.4
AUR62000670 Chenopodium quinoa HOM05D001135 ORTHO05D001005 5.1e-12 76.6 48 81.2
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 2.5e-11 74.3 62 58.1
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.9e-07 60.8 42 64.3
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 4.9e-07 60.1 51 54.9
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 8.4e-07 59.3 180 30.0
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 1.1e-06 58.9 146 32.2
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.4e-06 57.8 36 72.2


User provided reference genes

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