Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.3e-192 676.4 373 100.0
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.4e-185 650.6 373 90.9
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 3.7e-136 488.8 376 73.4
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 7.5e-121 438.0 378 65.3
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 2.8e-115 419.5 381 62.5
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.0e-110 401.7 381 59.1
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 6.6e-109 398.3 375 64.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.5e-108 397.1 381 61.2
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 3.3e-108 396.0 359 58.8
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 5.6e-108 395.2 376 59.6
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 7.3e-108 394.8 380 59.7
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.6e-107 393.7 381 57.2
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 3.6e-107 392.5 376 59.8
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 3.6e-107 392.5 393 57.8
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.7e-107 392.1 381 62.5
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 4.7e-107 392.1 379 57.5
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 6.2e-107 391.7 389 58.6
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.1e-106 389.4 391 54.2
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.2e-106 388.7 391 54.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 1.2e-105 387.5 395 58.7
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 2.9e-104 382.9 377 58.9
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 8.3e-104 381.3 375 58.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-103 380.9 392 53.6
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.4e-103 380.6 374 59.6
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 5.4e-103 378.6 377 58.9
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 7.0e-103 378.3 359 57.7
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 9.2e-103 377.9 378 56.9
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.0e-102 376.7 383 54.8
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 4.6e-102 375.6 367 56.1
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 7.8e-102 374.8 388 57.7
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 1.7e-101 373.6 400 57.2
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 2.3e-101 373.2 374 57.2
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 5.0e-101 372.1 388 53.9
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 6.6e-101 371.7 369 57.5
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 6.6e-101 371.7 355 57.5
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.5e-100 369.8 374 57.0
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.3e-100 369.0 371 55.5
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 4.3e-100 369.0 439 50.1
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 7.3e-100 368.2 392 52.6
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 9.5e-100 367.9 385 57.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 9.5e-100 367.9 368 57.3
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 9.5e-100 367.9 359 57.1
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.2e-99 367.5 384 56.5
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.6e-99 367.1 400 56.0
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 3.6e-99 365.9 380 58.2
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 1.1e-98 364.4 367 55.9
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.4e-98 364.0 376 55.6
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 3.1e-98 362.8 440 49.8
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 4.0e-98 362.5 348 58.9
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 4.0e-98 362.5 367 55.0
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 5.2e-98 362.1 391 56.8
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 6.8e-98 361.7 380 58.9
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 8.9e-98 361.3 394 55.8
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.5e-97 360.5 380 55.0
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.5e-97 360.5 379 54.4
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.6e-97 359.8 424 53.1
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 2.6e-97 359.8 382 56.5
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 3.4e-97 359.4 449 51.2
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 4.4e-97 359.0 387 54.5
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 4.4e-97 359.0 384 54.7
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 7.5e-97 358.2 386 51.0
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 9.9e-97 357.8 389 57.1
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.3e-96 357.5 362 55.0
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.7e-96 357.1 378 57.9
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 2.9e-96 356.3 389 55.5
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 6.4e-96 355.1 386 53.4
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 8.3e-96 354.8 368 58.4
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.1e-95 354.4 379 53.6
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 4.1e-95 352.4 378 56.1
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 5.4e-95 352.1 404 52.0
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 7.1e-95 351.7 375 54.9
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.1e-94 350.1 378 51.9
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 2.1e-94 350.1 460 46.3
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 2.1e-94 350.1 346 61.3
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 3.5e-94 349.4 384 54.7
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 4.6e-94 349.0 392 50.3
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.0e-93 347.8 387 50.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 6.6e-93 345.1 367 54.5
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 6.6e-93 345.1 384 53.4
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 6.6e-93 345.1 377 54.1
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 3.3e-92 342.8 367 52.6
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 4.3e-92 342.4 397 53.1
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.1e-91 340.1 377 51.2
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 1.8e-90 337.0 366 50.0
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.4e-90 336.7 372 58.3
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 4.0e-90 335.9 360 53.1
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 1.5e-89 334.0 372 58.1
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.0e-89 333.6 382 53.1
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 4.4e-89 332.4 346 51.7
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 2.9e-88 329.7 386 49.2
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.8e-88 329.3 376 49.2
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 6.4e-88 328.6 409 48.4
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.9e-87 327.0 419 46.1
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 7.1e-87 325.1 388 51.5
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 4.6e-86 322.4 361 49.9
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.1e-82 311.2 397 47.6
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 1.4e-82 310.8 352 49.4
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 1.4e-82 310.8 365 50.7
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 2.0e-81 307.0 460 43.5
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.2e-80 303.5 330 53.3
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.9e-79 300.4 318 51.3
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 4.2e-79 299.3 382 46.6
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 8.1e-75 285.0 363 46.6
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 5.8e-73 278.9 314 53.8
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 6.0e-62 242.3 162 70.4
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.5e-55 220.3 141 73.8
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.2e-49 201.4 385 39.2
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.0e-49 200.7 135 70.4
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.0e-48 198.4 366 35.8
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 7.4e-44 182.2 361 35.2
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.1e-42 178.3 339 34.5
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.8e-42 177.6 363 33.1
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 2.9e-40 170.2 277 45.5
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.2e-39 166.8 110 76.4
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.8e-29 134.4 230 33.0
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.6e-25 120.6 100 61.0
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.3e-24 118.2 179 40.8
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 4.7e-22 109.8 180 33.9
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 3.0e-21 107.1 206 34.0
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 3.0e-21 107.1 222 36.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 7.5e-20 102.4 64 73.4
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 8.2e-19 99.0 77 59.7
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 3.1e-18 97.1 56 80.4
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.9e-15 87.8 60 68.3
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.5e-12 78.2 59 66.1


User provided reference genes

Program Settings