Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039567 Chenopodium quinoa HOM05D005841 ORTHO05D007132 5.8e-178 627.5 323 100.0
AUR62035532 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.5e-112 409.5 347 68.0
AUR62041651 Chenopodium quinoa HOM05D005841 ORTHO05D007132 1.2e-111 407.1 347 67.4
EL10Ac9g20941 Beta vulgaris HOM05D005841 ORTHO05D007132 1.7e-92 343.6 347 57.3
Dinv14310 Davidia involucrata HOM05D005841 ORTHO05D007132 3.7e-92 342.4 367 54.5
Hund07799 Selenicereus undatus HOM05D005841 ORTHO05D007132 1.2e-90 337.4 363 55.4
Ah.07g203740 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.7e-89 333.6 353 55.8
CSS0015441 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 8.9e-86 321.2 367 52.6
Dinv24065 Davidia involucrata HOM05D005841 ORTHO05D007132 3.4e-85 319.3 368 51.6
Potri.003G189400 Populus trichocarpa HOM05D005841 ORTHO05D007132 2.8e-84 316.2 371 52.0
Atru.chr12.1096 Acer truncatum HOM05D005841 ORTHO05D007132 3.7e-84 315.8 372 51.3
Sc20g0000960 Simmondsia chinensis HOM05D005841 ORTHO05D007132 4.9e-84 315.5 369 51.8
Rhsim03G0005600 Rhododendron simsii HOM05D005841 ORTHO05D007132 1.4e-83 313.9 365 51.0
QL04p022932 Quercus lobata HOM05D005841 ORTHO05D007132 4.5e-82 308.9 411 46.5
Sabra01G0025200 Salix brachista HOM05D005841 ORTHO05D007132 7.8e-82 308.1 367 51.0
VMungo1080G1721 Vigna mungo HOM05D005841 ORTHO05D007132 1.0e-81 307.8 365 51.0
Glyma.04G125600 Glycine max HOM05D005841 ORTHO05D007132 2.3e-81 306.6 365 50.7
Glyma.06G313000 Glycine max HOM05D005841 ORTHO05D007132 5.0e-81 305.4 365 50.7
Lj3g0005753 Lotus japonicus HOM05D005841 ORTHO05D007132 5.0e-81 305.4 370 50.3
DCAR_019783 Daucus carota HOM05D005841 ORTHO05D007132 1.5e-80 303.9 362 50.6
Potri.001G036400 Populus trichocarpa HOM05D005841 ORTHO05D007132 1.9e-80 303.5 366 51.1
vmacro07900 Vaccinium macrocarpon HOM05D005841 ORTHO05D007132 2.5e-80 303.1 365 48.8
Lalb_Chr18g0048171 Lupinus albus HOM05D005841 ORTHO05D007132 3.3e-80 302.8 364 49.7
Medtr3g011510 Medicago truncatula HOM05D005841 ORTHO05D007132 3.3e-80 302.8 364 49.2
arahy.Tifrunner.gnm1.ann1.AX9XXP Arachis hypogaea HOM05D005841 ORTHO05D007132 5.6e-80 302.0 374 49.2
CiPaw.14G011500 Carya illinoinensis HOM05D005841 ORTHO05D007132 7.3e-80 301.6 423 46.1
Manes.04G153300 Manihot esculenta HOM05D005841 ORTHO05D007132 7.3e-80 301.6 386 48.2
Peaxi162Scf00258g00731 Petunia axillaris HOM05D005841 ORTHO05D007132 7.3e-80 301.6 417 45.3
Phvul.005G012800 Phaseolus vulgaris HOM05D005841 ORTHO05D007132 9.5e-80 301.2 365 50.4
Nn2g15922 Nelumbo nucifera HOM05D005841 ORTHO05D007132 1.2e-79 300.8 326 54.0
ECA248G0891 Erigeron canadensis HOM05D005841 ORTHO05D007132 2.1e-79 300.1 280 59.6
TPR.G5121 Trifolium pratense HOM05D005841 ORTHO05D007132 2.1e-79 300.1 401 46.1
MSTRG.19910 Avicennia marina HOM05D005841 ORTHO05D007132 4.7e-79 298.9 355 48.5
Lju124A25T34 Lonicera japonica HOM05D005841 ORTHO05D007132 4.7e-79 298.9 363 51.5
GSVIVG01027370001 Vitis vinifera HOM05D005841 ORTHO05D007132 4.7e-79 298.9 368 49.5
Nitab4.5_0004458g0010 Nicotiana tabacum HOM05D005841 ORTHO05D007132 6.1e-79 298.5 412 45.1
TWI38G1535 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 8.0e-79 298.1 353 50.4
Oeu007758.1 Olea europaea HOM05D005841 ORTHO05D007132 6.8e-78 295.0 356 49.4
THA.LOC104809184 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 8.9e-78 294.7 365 46.8
Nitab4.5_0000324g0020 Nicotiana tabacum HOM05D005841 ORTHO05D007132 1.2e-77 294.3 411 44.8
TWI15G0221 Tripterygium wilfordii HOM05D005841 ORTHO05D007132 1.2e-77 294.3 362 48.9
Actinidia22040 Actinidia chinensis HOM05D005841 ORTHO05D007132 2.0e-77 293.5 363 51.0
Haze_02951 Corylus avellana HOM05D005841 ORTHO05D007132 2.0e-77 293.5 461 42.1
PSO339G0077 Papaver somniferum HOM05D005841 ORTHO05D007132 2.0e-77 293.5 369 48.2
PSO384G2928 Papaver somniferum HOM05D005841 ORTHO05D007132 2.0e-77 293.5 369 48.2
Sabra03G0139600 Salix brachista HOM05D005841 ORTHO05D007132 5.7e-77 292.0 354 49.7
Lsat_1_v5_gn_5_163601 Lactuca sativa HOM05D005841 ORTHO05D007132 7.5e-77 291.6 277 59.6
Ah.15g098060 Amaranthus hybridus HOM05D005841 ORTHO05D007132 1.3e-76 290.8 234 69.7
Ca_26913_v3 Cicer arietinum L. HOM05D005841 ORTHO05D007132 1.3e-76 290.8 350 50.3
HanXRQChr13g0390471 Helianthus annuus HOM05D005841 ORTHO05D007132 4.9e-76 288.9 278 58.6
THA.LOC104824200 Tarenaya hassleriana HOM05D005841 ORTHO05D007132 4.9e-76 288.9 367 49.0
Ciclev10001427m.g Citrus clementina HOM05D005841 ORTHO05D007132 6.4e-76 288.5 392 46.7
Cc06_g15810 Coffea canephora HOM05D005841 ORTHO05D007132 6.4e-76 288.5 379 47.5
SGA_v2.0_scaffold69G23059 Striga asiatica HOM05D005841 ORTHO05D007132 1.8e-75 287.0 352 49.1
unitig_699.g19444 Utricularia gibba HOM05D005841 ORTHO05D007132 2.4e-75 286.6 353 45.0
MBI19_g24060_MAGBIO Magnolia biondii HOM05D005841 ORTHO05D007132 4.1e-75 285.8 278 56.8
Thecc.10G128400 Theobroma cacao HOM05D005841 ORTHO05D007132 7.0e-75 285.0 363 46.8
MD07G1085200 Malus domestica HOM05D005841 ORTHO05D007132 1.2e-74 284.3 353 49.9
Solyc10g080520.3 Solanum lycopersicum HOM05D005841 ORTHO05D007132 1.6e-74 283.9 274 55.5
Gorai.010G208800 Gossypium raimondii HOM05D005841 ORTHO05D007132 3.5e-74 282.7 363 46.3
Gohir.A06G171000 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.6e-74 282.3 363 46.3
Gohir.D06G178900 Gossypium hirsutum HOM05D005841 ORTHO05D007132 4.6e-74 282.3 363 46.3
Aa31sc488G20 Aethionema arabicum HOM05D005841 ORTHO05D007132 7.8e-74 281.6 361 47.6
Sopen10g031070 Solanum pennellii HOM05D005841 ORTHO05D007132 7.8e-74 281.6 274 55.1
MSTRG.26082 Avicennia marina HOM05D005841 ORTHO05D007132 2.3e-73 280.0 375 46.9
PGSC0003DMG400023670 Solanum tuberosum HOM05D005841 ORTHO05D007132 3.0e-73 279.6 274 54.7
Eucgr.G03178 Eucalyptus grandis HOM05D005841 ORTHO05D007132 5.0e-73 278.9 399 44.4
Duzib128G0994 Durio zibethinus HOM05D005841 ORTHO05D007132 6.6e-73 278.5 349 47.0
CANSAT56G0667 Cannabis sativa HOM05D005841 ORTHO05D007132 1.9e-72 276.9 390 44.9
FvH4_7g04620 Fragaria vesca HOM05D005841 ORTHO05D007132 2.5e-72 276.6 340 50.9
BcaB02g07739 Brassica carinata HOM05D005841 ORTHO05D007132 3.3e-72 276.2 282 54.3
BolC8t50563H Brassica oleracea HOM05D005841 ORTHO05D007132 3.3e-72 276.2 281 56.9
C08p29570 Brassica napus HOM05D005841 ORTHO05D007132 4.3e-72 275.8 281 56.9
Sp5g08040 Schrenkiella parvula HOM05D005841 ORTHO05D007132 5.6e-72 275.4 284 54.2
Prupe.2G051700 Prunus persica HOM05D005841 ORTHO05D007132 7.3e-72 275.0 354 48.9
CARHR164270 Cardamine hirsuta HOM05D005841 ORTHO05D007132 1.2e-71 274.2 275 56.0
RcHm_v2.0_Chr1g0330051 Rosa chinensis HOM05D005841 ORTHO05D007132 1.2e-71 274.2 347 49.3
BraA09t40195Z Brassica rapa HOM05D005841 ORTHO05D007132 1.6e-71 273.9 281 56.6
Migut.J01841 Erythranthe guttata HOM05D005841 ORTHO05D007132 1.6e-71 273.9 353 45.9
A09p47340 Brassica napus HOM05D005841 ORTHO05D007132 2.1e-71 273.5 280 56.1
AUR62041645 Chenopodium quinoa HOM05D005841 ORTHO05D007132 2.1e-71 273.5 214 72.0
COL.COLO4_09288 Corchorus olitorius HOM05D005841 ORTHO05D007132 3.6e-71 272.7 365 44.9
AL5G35420 Arabidopsis lyrata HOM05D005841 ORTHO05D007132 6.2e-71 271.9 282 55.7
Carub.0005s2096 Capsella rubella HOM05D005841 ORTHO05D007132 8.0e-71 271.6 282 53.2
CsaV3_5G029280 Cucumis sativus L. HOM05D005841 ORTHO05D007132 1.4e-70 270.8 411 44.0
Thhalv10010421m.g Eutrema salsugineum HOM05D005841 ORTHO05D007132 1.4e-70 270.8 284 53.9
Sed0002293 Sechium edule HOM05D005841 ORTHO05D007132 1.8e-70 270.4 393 44.3
MELO3C011778.2 Cucumis melo HOM05D005841 ORTHO05D007132 4.0e-70 269.2 284 53.9
AT3G54360 Arabidopsis thaliana HOM05D005841 ORTHO05D007132 8.9e-70 268.1 275 55.6
Os01g0104100 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 8.9e-70 268.1 322 49.4
Aqoxy3G04362 Aquilegia oxysepala HOM05D005841 ORTHO05D007132 1.2e-69 267.7 276 54.3
Sed0011967 Sechium edule HOM05D005841 ORTHO05D007132 1.2e-69 267.7 284 53.2
BcaB01g00199 Brassica carinata HOM05D005841 ORTHO05D007132 1.5e-69 267.3 281 55.2
A07p22080 Brassica napus HOM05D005841 ORTHO05D007132 1.5e-69 267.3 280 52.9
BraA07t29891Z Brassica rapa HOM05D005841 ORTHO05D007132 1.5e-69 267.3 280 52.9
Zm00001eb126920 Zea mays HOM05D005841 ORTHO05D007132 1.5e-69 267.3 275 54.5
Os02g0795300 Oryza sativa ssp. japonica HOM05D005841 ORTHO05D007132 6.4e-68 261.9 292 51.7
CDE02G3427 Ceratophyllum demersum HOM05D005841 ORTHO05D007132 8.3e-68 261.5 281 52.3
arahy.Tifrunner.gnm1.ann1.87YK44 Arachis hypogaea HOM05D005841 ORTHO05D007132 1.4e-67 260.8 380 45.8
FAN06G1077 Fragaria x ananassa HOM05D005841 ORTHO05D007132 5.4e-67 258.8 349 48.1
FAN10G3225 Fragaria x ananassa HOM05D005841 ORTHO05D007132 7.0e-67 258.5 349 48.1
FAN03G2595 Fragaria x ananassa HOM05D005841 ORTHO05D007132 9.2e-67 258.1 326 50.0
FAN06G4202 Fragaria x ananassa HOM05D005841 ORTHO05D007132 1.2e-66 257.7 349 48.1
FAN01G0675 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.3e-65 253.4 326 49.4
SEGI_15550 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 6.6e-65 251.9 280 52.1
C06p22120 Brassica napus HOM05D005841 ORTHO05D007132 1.1e-64 251.1 282 51.8
BolC6t37399H Brassica oleracea HOM05D005841 ORTHO05D007132 1.1e-64 251.1 282 51.8
Psat5g225080 Pisum sativum HOM05D005841 ORTHO05D007132 9.5e-64 248.1 310 50.3
ClCG11G012870 Citrullus lanatus HOM05D005841 ORTHO05D007132 1.2e-58 231.1 283 50.5
Pp3c4_17260 Physcomitrium patens HOM05D005841 ORTHO05D007132 5.6e-56 222.2 278 47.5
Mapoly0042s0033 Marchantia polymorpha HOM05D005841 ORTHO05D007132 2.1e-55 220.3 279 45.9
AagrBONN_evm.TU.Sc2ySwM_344.2135 Anthoceros agrestis HOM05D005841 ORTHO05D007132 8.9e-54 214.9 303 42.2
BcaC08g44679 Brassica carinata HOM05D005841 ORTHO05D007132 2.6e-53 213.4 282 47.2
CSS0023245 Camellia sinensis var. sinensis HOM05D005841 ORTHO05D007132 8.4e-52 208.4 213 57.7
SMO194G0025 Selaginella moellendorffii HOM05D005841 ORTHO05D007132 1.0e-49 201.4 269 44.2
HPP92_001714 Vanilla planifolia HOM05D005841 ORTHO05D007132 3.3e-48 196.4 255 45.9
Gorai.011G224300 Gossypium raimondii HOM05D005841 ORTHO05D007132 1.7e-44 184.1 249 44.2
ATR0068G039 Amborella trichopoda HOM05D005841 ORTHO05D007132 1.2e-37 161.4 128 64.8
Gohir.D10G200101 Gossypium hirsutum HOM05D005841 ORTHO05D007132 3.2e-35 153.3 129 62.0
CBR_g19049 Chara braunii HOM05D005841 ORTHO05D007132 9.0e-30 135.2 337 32.0
Cpa.g.sc33.143 Carica papaya HOM05D005841 ORTHO05D007132 2.3e-25 120.6 164 42.7
Hma1.2p1_3953F.1_g338070 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 1.4e-22 111.3 160 43.1
Hma1.2p1_3953F.1_g338060 Hydrangea macrophylla HOM05D005841 ORTHO05D007132 4.2e-19 99.8 74 66.2
SEGI_12352 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 2.2e-15 87.4 131 43.5
FAN03G2434 Fragaria x ananassa HOM05D005841 ORTHO05D007132 2.4e-14 84.0 156 37.8
ATR0068G030 Amborella trichopoda HOM05D005841 ORTHO05D007132 2.0e-13 80.9 65 61.5
Gohir.D10G200050 Gossypium hirsutum HOM05D005841 ORTHO05D007132 2.2e-12 77.4 121 37.2
TAR629G2175 Trochodendron aralioides HOM05D005841 ORTHO05D007132 2.5e-11 73.9 133 38.3
SEGI_26376 Sequoiadendron giganteum HOM05D005841 ORTHO05D007132 7.2e-11 72.4 145 36.6
Psat0s5799g0040 Pisum sativum HOM05D005841 ORTHO05D007132 1.0e-09 68.6 55 65.5
Psat7g004640 Pisum sativum HOM05D000860 ORTHO05D005731 4.8e-07 59.7 57 47.4
AUR62019085 Chenopodium quinoa HOM05D000084 ORTHO05D000639 6.3e-07 59.3 66 56.1
TPR.G5122 Trifolium pratense HOM05D003377 ORTHO05D004080 6.9e-06 55.8 62 43.5
AUR62035846 Chenopodium quinoa HOM05D000065 ORTHO05D000162 9.1e-06 55.5 62 58.1


User provided reference genes

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