Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039512 Chenopodium quinoa HOM05D003120 ORTHO05D003568 4.3e-231 804.3 406 100.0
AUR62043239 Chenopodium quinoa HOM05D003120 ORTHO05D003568 5.2e-91 339.0 288 65.3
AUR62043240 Chenopodium quinoa HOM05D000107 ORTHO05D000062 4.0e-59 233.0 203 65.5
AUR62038290 Chenopodium quinoa HOM05D003120 ORTHO05D003568 7.1e-40 169.1 230 45.7
AUR62044231 Chenopodium quinoa HOM05D000107 ORTHO05D000062 3.5e-39 166.8 619 28.8
EL10Ac2g03017 Beta vulgaris HOM05D000107 ORTHO05D000062 1.7e-33 147.9 235 40.4
AUR62038421 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.1e-32 145.2 102 73.5
AUR62031313 Chenopodium quinoa HOM05D003120 ORTHO05D003568 1.2e-31 141.7 157 51.0
AUR62042307 Chenopodium quinoa HOM05D003120 ORTHO05D003568 3.8e-25 120.2 138 50.0
AUR62040739 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.3e-22 111.7 246 33.3
EL10Ac3g06668 Beta vulgaris HOM05D000107 ORTHO05D000062 4.5e-18 96.7 238 31.1
Nitab4.5_0001701g0120 Nicotiana tabacum HOM05D003120 ORTHO05D003568 5.8e-18 96.3 262 30.5
Peaxi162Scf00250g00511 Petunia axillaris HOM05D003120 ORTHO05D003568 6.4e-17 92.8 266 30.5
TWI18G1095 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 4.2e-16 90.1 279 26.9
TWI73G1228 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.4e-16 89.7 279 27.2
EL10Ac7g17964 Beta vulgaris HOM05D000107 ORTHO05D000062 1.2e-15 88.6 174 35.6
EL10Ac8g19715 Beta vulgaris HOM05D000107 ORTHO05D000062 1.2e-15 88.6 128 40.6
AUR62031314 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.2e-15 88.6 176 36.9
AUR62031357 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.2e-15 88.6 104 48.1
Nitab4.5_0000892g0160 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.6e-15 88.2 283 30.4
EL10Ac6g14520 Beta vulgaris HOM05D007938 ORTHO05D009929 2.7e-15 87.4 109 48.6
Nitab4.5_0000179g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.7e-15 87.4 292 30.8
Nitab4.5_0006586g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.7e-15 87.4 292 30.5
Peaxi162Scf00010g00918 Petunia axillaris HOM05D003120 ORTHO05D003568 2.7e-15 87.4 313 27.2
Ah.05g173540 Amaranthus hybridus HOM05D000107 ORTHO05D000062 3.5e-15 87.0 71 60.6
Peaxi162Scf00634g00413 Petunia axillaris HOM05D003120 ORTHO05D003568 4.6e-15 86.7 256 30.1
Peaxi162Scf00005g02812 Petunia axillaris HOM05D003120 ORTHO05D003568 1.0e-14 85.5 273 27.8
Nitab4.5_0011072g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.0e-14 84.0 297 28.6
AUR62018304 Chenopodium quinoa HOM05D000107 ORTHO05D009929 6.7e-14 82.8 107 44.9
EL10Ac7g17483 Beta vulgaris HOM05D000107 ORTHO05D000062 8.7e-14 82.4 122 36.1
AUR62033834 Chenopodium quinoa HOM05D000107 ORTHO05D000062 8.7e-14 82.4 70 58.6
AUR62035727 Chenopodium quinoa HOM05D000107 ORTHO05D000062 8.7e-14 82.4 106 43.4
Nitab4.5_0000210g0170 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.1e-13 82.0 288 28.1
Sc03g0004800 Simmondsia chinensis HOM05D003120 ORTHO05D003568 7.4e-13 79.3 138 35.5
Sopen01g033440 Solanum pennellii HOM05D003120 ORTHO05D003568 7.4e-13 79.3 262 29.0
EL10Ac1g02214 Beta vulgaris HOM05D000107 ORTHO05D000062 1.3e-12 78.6 68 54.4
Nitab4.5_0002512g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.3e-12 78.6 246 29.3
EL10Ac6g14536 Beta vulgaris HOM05D000107 ORTHO05D000062 1.6e-12 78.2 71 52.1
AUR62031356 Chenopodium quinoa HOM05D000107 ORTHO05D000062 2.8e-12 77.4 55 69.1
Peaxi162Scf00204g01521 Petunia axillaris HOM05D003120 ORTHO05D003568 2.8e-12 77.4 210 32.9
AUR62042306 Chenopodium quinoa HOM05D000107 ORTHO05D000062 4.8e-12 76.6 106 40.6
Peaxi162Scf00131g00120 Petunia axillaris HOM05D003120 ORTHO05D003568 6.2e-12 76.3 265 29.8
Peaxi162Scf00524g00083 Petunia axillaris HOM05D003120 ORTHO05D003568 1.1e-11 75.5 362 25.1
PGSC0003DMG400019085 Solanum tuberosum HOM05D000107 ORTHO05D000062 1.8e-11 74.7 126 41.3
Peaxi162Scf00473g00101 Petunia axillaris HOM05D003120 ORTHO05D003568 2.4e-11 74.3 242 27.7
Nitab4.5_0003305g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.1e-11 73.9 161 31.7
Peaxi162Scf00085g00199 Petunia axillaris HOM05D003120 ORTHO05D003568 3.1e-11 73.9 158 34.2
TWI59G0531 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 5.3e-11 73.2 165 30.9
Peaxi162Scf00941g00044 Petunia axillaris HOM05D003120 ORTHO05D003568 9.0e-11 72.4 183 31.7
QL04p020321 Quercus lobata HOM05D000315 ORTHO05D000062 9.0e-11 72.4 120 40.8
TAR344G0003 Trochodendron aralioides HOM05D000107 ORTHO05D000062 1.5e-10 71.6 118 39.0
Atru.chr1.497 Acer truncatum HOM05D000107 ORTHO05D000062 4.5e-10 70.1 112 38.4
Atru.chr5.1751 Acer truncatum HOM05D000107 ORTHO05D000062 4.5e-10 70.1 112 38.4
Nitab4.5_0006444g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 4.5e-10 70.1 139 33.8
Peaxi162Scf00311g00619 Petunia axillaris HOM05D003120 ORTHO05D003568 7.6e-10 69.3 253 26.1
Peaxi162Scf00091g00169 Petunia axillaris HOM05D003120 ORTHO05D003568 1.0e-09 68.9 141 32.6
QL12p026353 Quercus lobata HOM05D000107 ORTHO05D000062 1.3e-09 68.6 121 38.8
TAR709G0002 Trochodendron aralioides HOM05D000107 ORTHO05D000568 1.3e-09 68.6 107 39.3
Rhsim05G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-09 68.2 128 34.4
TAR049G0006 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.2e-09 67.8 108 40.7
Nitab4.5_0000282g0120 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.9e-09 67.4 224 29.9
Nitab4.5_0007972g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.9e-09 67.4 214 30.8
Peaxi162Scf00009g00715 Petunia axillaris HOM05D003120 ORTHO05D003568 2.9e-09 67.4 274 25.9
Atru.chr11.622 Acer truncatum HOM05D000107 ORTHO05D000062 3.8e-09 67.0 107 34.6
Lj4g0021587 Lotus japonicus HOM05D000107 ORTHO05D000062 3.8e-09 67.0 160 30.6
TWI23G0253 Tripterygium wilfordii HOM05D003120 ORTHO05D003568 4.9e-09 66.6 256 25.4
Atru.chr1.1625 Acer truncatum HOM05D000107 ORTHO05D000062 8.4e-09 65.9 113 36.3
Atru.chr3.2737 Acer truncatum HOM05D000107 ORTHO05D000062 8.4e-09 65.9 107 35.5
CANSAT11G2258 Cannabis sativa HOM05D000107 ORTHO05D000062 8.4e-09 65.9 115 33.0
Nitab4.5_0002287g0030 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.4e-09 65.9 131 35.9
Peaxi162Scf00878g00111 Petunia axillaris HOM05D003120 ORTHO05D003568 8.4e-09 65.9 141 36.2
Rhsim01G0104600 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.4e-09 65.9 127 33.9
Rhsim04G0033300 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.4e-09 65.9 127 33.9
Peaxi162Scf00005g03215 Petunia axillaris HOM05D003120 ORTHO05D003568 1.1e-08 65.5 243 30.5
Peaxi162Scf00041g00711 Petunia axillaris HOM05D003120 ORTHO05D003568 1.1e-08 65.5 143 34.3
CANSAT64G0358 Cannabis sativa HOM05D000107 ORTHO05D000062 1.4e-08 65.1 110 35.5
Nitab4.5_0002038g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.4e-08 65.1 139 33.8
CSS0014387 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.9e-08 64.7 150 31.3
CANSAT64G2045 Cannabis sativa HOM05D000107 ORTHO05D000062 1.9e-08 64.7 110 36.4
Peaxi162Scf00830g00027 Petunia axillaris HOM05D003120 ORTHO05D003568 1.9e-08 64.7 221 29.4
Atru.chr10.32 Acer truncatum HOM05D000107 ORTHO05D000062 2.5e-08 64.3 107 35.5
Atru.chr11.780 Acer truncatum HOM05D000107 ORTHO05D000062 2.5e-08 64.3 113 36.3
Nitab4.5_0008225g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 2.5e-08 64.3 139 34.5
COL.COLO4_21469 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.2e-08 63.9 257 24.1
Peaxi162Scf01480g00009 Petunia axillaris HOM05D003120 ORTHO05D003568 3.2e-08 63.9 134 33.6
PGSC0003DMG401013972 Solanum tuberosum HOM05D000107 ORTHO05D000062 3.2e-08 63.9 77 48.1
Atru.chr2.1893 Acer truncatum HOM05D000107 ORTHO05D000062 4.2e-08 63.5 113 35.4
Aqoxy2G01646 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 4.2e-08 63.5 108 37.0
CSS0003322 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.2e-08 63.5 170 30.0
CAN.G175.7 Capsicum annuum HOM05D000107 ORTHO05D000568 5.5e-08 63.2 126 34.9
Rhsim01G0072500 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.5e-08 63.2 125 33.6
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.5e-08 63.2 127 33.1
Rhsim09G0134500 Rhododendron simsii HOM05D000107 ORTHO05D000062 5.5e-08 63.2 127 33.1
CSS0012803 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-08 62.8 170 30.0
CSS0047068 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-08 62.8 170 30.0
CSS0048301 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.1e-08 62.8 170 30.0
Atru.chr4.799 Acer truncatum HOM05D000107 ORTHO05D000062 9.3e-08 62.4 115 35.7
CSS0024740 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 9.3e-08 62.4 104 34.6
Nitab4.5_0001521g0040 Nicotiana tabacum HOM05D003120 ORTHO05D003568 9.3e-08 62.4 61 50.8
Nitab4.5_0006428g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 9.3e-08 62.4 222 31.1
EL10Ac1g02206 Beta vulgaris HOM05D000107 ORTHO05D000062 1.2e-07 62.0 119 31.9
Nitab4.5_0000433g0100 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.2e-07 62.0 129 36.4
Nitab4.5_0000765g0020 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.2e-07 62.0 248 25.8
Nitab4.5_0002137g0170 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.2e-07 62.0 121 35.5
Peaxi162Scf00063g00159 Petunia axillaris HOM05D003120 ORTHO05D003568 1.2e-07 62.0 225 28.4
Rhsim11G0067600 Rhododendron simsii HOM05D000107 ORTHO05D000568 1.2e-07 62.0 127 33.1
AUR62027660 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.6e-07 61.6 72 47.2
Nitab4.5_0000179g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.6e-07 61.6 62 50.0
Peaxi162Scf00287g00413 Petunia axillaris HOM05D003120 ORTHO05D003568 1.6e-07 61.6 154 33.8
CSS0009480 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.1e-07 61.2 120 33.3
CSS0036122 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 2.1e-07 61.2 120 32.5
QL04p035440 Quercus lobata HOM05D000315 ORTHO05D000527 2.1e-07 61.2 105 38.1
TAR190G0002 Trochodendron aralioides HOM05D000107 ORTHO05D000062 2.1e-07 61.2 106 35.8
Peaxi162Scf00436g00007 Petunia axillaris HOM05D003120 ORTHO05D003568 2.7e-07 60.8 318 23.9
Peaxi162Scf02251g00003 Petunia axillaris HOM05D003120 ORTHO05D003568 2.7e-07 60.8 60 50.0
RcHm_v2.0_Chr2g0111791 Rosa chinensis HOM05D000107 ORTHO05D000062 2.7e-07 60.8 106 36.8
CAN.G61.24 Capsicum annuum HOM05D000107 ORTHO05D000062 3.5e-07 60.5 118 33.9
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 3.5e-07 60.5 170 30.6
CSS0032482 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 4.6e-07 60.1 104 32.7
COL.COLO4_05951 Corchorus olitorius HOM05D003120 ORTHO05D003568 4.6e-07 60.1 124 35.5
Nitab4.5_0000248g0040 Nicotiana tabacum HOM05D003120 ORTHO05D003568 4.6e-07 60.1 275 25.1
Rhsim08G0137300 Rhododendron simsii HOM05D000107 ORTHO05D000062 4.6e-07 60.1 120 32.5
Aqoxy5G02221 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 6.0e-07 59.7 55 50.9
Peaxi162Scf00296g00108 Petunia axillaris HOM05D003120 ORTHO05D003568 6.0e-07 59.7 160 31.2
Sopen12g025990 Solanum pennellii HOM05D000004 ORTHO05D000002 6.0e-07 59.7 112 33.9
TAR055G0004 Trochodendron aralioides HOM05D000107 ORTHO05D000062 6.0e-07 59.7 132 29.5
CSS0007461 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.9e-07 59.3 120 31.7
CSS0007472 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.9e-07 59.3 120 31.7
CSS0007710 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.9e-07 59.3 120 31.7
CSS0018002 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.9e-07 59.3 120 31.7
CSS0047073 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 7.9e-07 59.3 120 31.7
Nitab4.5_0005809g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 7.9e-07 59.3 230 28.3
Nitab4.5_0006729g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 7.9e-07 59.3 246 26.0
QL05p061366 Quercus lobata HOM05D000107 ORTHO05D000062 7.9e-07 59.3 58 48.3
CSS0031171 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.0e-06 58.9 120 31.7
CAN.G50.3 Capsicum annuum HOM05D003120 ORTHO05D003568 1.0e-06 58.9 203 24.6
Nitab4.5_0000196g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.0e-06 58.9 208 32.7
Rhsim13G0141700 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.0e-06 58.9 115 34.8
Atru.chr2.2656 Acer truncatum HOM05D000107 ORTHO05D000062 1.3e-06 58.5 58 48.3
Aqoxy3G01770 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.3e-06 58.5 105 37.1
CSS0028705 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.3e-06 58.5 120 31.7
Nitab4.5_0000008g0040 Nicotiana tabacum HOM05D003120 ORTHO05D003568 1.3e-06 58.5 236 27.1
Atru.chr2.1683 Acer truncatum HOM05D000107 ORTHO05D000062 1.8e-06 58.2 113 34.5
Aqoxy6G01994 Aquilegia oxysepala HOM05D000107 ORTHO05D000062 1.8e-06 58.2 115 34.8
CSS0022362 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 1.8e-06 58.2 136 32.4
CANSAT64G1673 Cannabis sativa HOM05D000107 ORTHO05D000062 1.8e-06 58.2 117 29.9
CANSAT64G2733 Cannabis sativa HOM05D000107 ORTHO05D000062 1.8e-06 58.2 117 29.9
AUR62041594 Chenopodium quinoa HOM05D000107 ORTHO05D000062 1.8e-06 58.2 120 34.2
Rhsim02G0220700 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-06 58.2 120 31.7
Rhsim06G0085100 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.8e-06 58.2 120 31.7
PSO724G1056 Papaver somniferum HOM05D000107 ORTHO05D000062 2.3e-06 57.8 117 29.1
Rhsim11G0013600 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.3e-06 57.8 77 39.0
AUR62031354 Chenopodium quinoa HOM05D000003 ORTHO05D000006 3.0e-06 57.4 44 68.2
ECA248G0231 Erigeron canadensis HOM05D000107 ORTHO05D000062 3.0e-06 57.4 110 33.6
Rhsim03G0202400 Rhododendron simsii HOM05D000107 ORTHO05D000062 3.0e-06 57.4 205 25.4
Nitab4.5_0001836g0050 Nicotiana tabacum HOM05D003120 ORTHO05D003568 3.9e-06 57.0 74 40.5
Peaxi162Scf00091g01210 Petunia axillaris HOM05D003120 ORTHO05D003568 3.9e-06 57.0 125 30.4
Atru.chr11.112 Acer truncatum HOM05D000107 ORTHO05D000062 5.1e-06 56.6 123 34.1
Atru.chr6.2082 Acer truncatum HOM05D000107 ORTHO05D000062 5.1e-06 56.6 123 32.5
CSS0020537 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-06 56.6 132 31.8
CSS0038506 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 5.1e-06 56.6 132 31.8
PSO339G4193 Papaver somniferum HOM05D000107 ORTHO05D000062 5.1e-06 56.6 117 28.2
Lj8C456G3 Lonicera japonica HOM05D000107 ORTHO05D000062 6.7e-06 56.2 110 31.8
QL12p013571 Quercus lobata HOM05D000107 ORTHO05D000062 6.7e-06 56.2 93 38.7
QL93p0093_0054 Quercus lobata HOM05D003120 ORTHO05D003568 6.7e-06 56.2 139 28.8
Solyc02g005360.3 Solanum lycopersicum HOM05D003120 ORTHO05D003568 6.7e-06 56.2 170 29.4
Atru.chr3.1417 Acer truncatum HOM05D000107 ORTHO05D000062 8.7e-06 55.8 121 31.4
CSS0006285 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0013019 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0020176 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0022844 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0033153 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0036792 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CSS0043987 Camellia sinensis var. sinensis HOM05D000107 ORTHO05D000062 8.7e-06 55.8 132 31.8
CiPaw.14G126400 Carya illinoinensis HOM05D003120 ORTHO05D003568 8.7e-06 55.8 139 26.6
Nitab4.5_0000066g0180 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.7e-06 55.8 50 56.0
Nitab4.5_0001285g0010 Nicotiana tabacum HOM05D003120 ORTHO05D003568 8.7e-06 55.8 162 27.8
Sopen10g018180 Solanum pennellii HOM05D003120 ORTHO05D000001 8.7e-06 55.8 96 34.4


User provided reference genes

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