Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 0.0e+00 1391.7 712 100.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 0.0e+00 1229.9 723 86.3
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 0.0e+00 1111.3 723 79.5
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 0.0e+00 1095.9 723 76.9
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 3.4e-308 1061.2 718 74.2
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 8.5e-307 1056.6 722 73.5
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 4.4e-303 1044.3 724 74.2
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 4.4e-303 1044.3 727 72.6
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 3.1e-301 1038.1 726 72.5
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 4.1e-301 1037.7 723 72.5
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.3e-299 1032.7 723 72.9
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 7.2e-298 1026.9 723 71.4
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 2.1e-297 1025.4 699 75.0
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 3.6e-297 1024.6 723 71.4
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 4.7e-297 1024.2 723 72.9
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 5.2e-296 1020.8 723 71.5
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 8.8e-296 1020.0 723 71.2
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 2.0e-295 1018.8 723 71.9
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 9.7e-295 1016.5 724 70.9
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 6.3e-294 1013.8 722 70.9
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 1.4e-293 1012.7 723 70.4
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 1.7e-291 1005.7 723 70.8
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 6.1e-289 997.3 723 69.3
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 4.0e-288 994.6 725 69.0
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.2e-287 993.0 835 63.1
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-287 992.6 725 68.8
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.5e-287 992.6 725 68.8
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.4e-287 991.5 725 69.4
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 9.8e-287 989.9 792 66.2
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 1.7e-286 989.2 726 69.4
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.8e-286 988.4 725 68.4
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 2.4e-285 985.3 723 67.8
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 3.1e-285 984.9 729 69.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 2.0e-284 982.2 726 70.1
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 4.5e-284 981.1 719 69.5
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 7.7e-284 980.3 723 68.9
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 7.7e-284 980.3 726 69.8
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 1.3e-283 979.5 730 70.0
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 2.3e-283 978.8 736 68.5
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 8.6e-283 976.9 723 70.4
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 7.2e-282 973.8 721 67.4
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 8.0e-281 970.3 723 68.9
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 4.0e-280 968.0 727 68.2
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 3.7e-278 961.4 727 67.8
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 4.9e-278 961.1 730 67.8
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 5.4e-277 957.6 721 66.7
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 1.7e-275 952.6 721 66.7
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 2.9e-275 951.8 721 66.9
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.6e-273 946.0 725 66.6
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 1.2e-271 939.9 726 67.1
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 4.4e-271 937.9 716 67.0
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 2.2e-270 935.6 725 65.2
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 1.8e-269 932.6 650 73.4
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 7.0e-269 930.6 697 67.4
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 1.6e-268 929.5 732 64.1
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 2.0e-268 929.1 729 67.4
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 6.6e-267 924.1 719 66.8
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 6.6e-267 924.1 720 66.1
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 1.6e-265 919.5 724 64.8
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 1.8e-264 916.0 731 64.8
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 5.2e-264 914.4 724 64.5
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 4.1e-261 904.8 727 65.6
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 1.2e-260 903.3 621 74.4
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 2.8e-257 892.1 715 65.2
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.2e-249 866.7 725 59.9
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 9.2e-245 850.5 722 58.7
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 3.0e-243 845.5 725 57.9
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 1.2e-241 840.1 726 58.4
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 1.4e-240 836.6 726 57.9
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 2.4e-240 835.9 723 58.1
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 4.0e-240 835.1 726 58.0
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 9.0e-240 833.9 721 57.3
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 9.0e-240 833.9 721 57.3
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 9.0e-240 833.9 721 57.3
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.2e-239 833.6 720 57.2
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 1.9e-237 826.2 725 60.1
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 5.4e-237 824.7 722 57.2
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 5.4e-237 824.7 722 57.2
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 1.8e-232 809.7 728 58.0
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 5.3e-232 808.1 728 57.8
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.2e-223 780.4 495 82.2
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 1.9e-210 736.5 664 58.1
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 1.7e-206 723.4 587 64.4
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 3.2e-197 692.6 733 51.6
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 3.2e-189 666.0 479 69.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.9e-182 642.9 671 53.1
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.5e-181 638.6 671 51.3
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 4.7e-180 635.6 665 51.3
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 8.8e-179 631.3 678 50.4
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 1.5e-178 630.6 676 50.9
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 1.8e-176 623.6 469 68.7
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 2.7e-175 619.8 437 73.7
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.5e-167 592.8 588 54.1
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 1.1e-144 518.1 666 44.6
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 2.3e-139 500.4 428 61.9
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 1.1e-133 481.5 430 55.3
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 9.6e-125 451.8 375 62.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 2.4e-123 447.2 661 37.8
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 2.1e-119 434.1 479 51.4
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.5e-117 427.2 335 64.5
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 5.3e-115 419.5 392 53.6
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 1.3e-113 414.8 350 64.9
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 9.3e-112 408.7 299 66.6
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 3.9e-110 403.3 312 67.0
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 2.5e-109 400.6 396 55.8
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 2.1e-103 380.9 296 65.2
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.1e-101 375.2 229 80.8
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 5.3e-99 366.3 268 69.4
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 6.1e-95 352.8 270 66.7
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.0e-73 282.3 237 59.5
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 8.5e-65 252.7 206 59.2
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 2.5e-56 224.6 160 72.5
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.1e-55 221.5 150 75.3
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 9.2e-43 179.5 143 60.8
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 7.0e-35 153.3 130 60.0
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 6.2e-31 140.2 727 25.2
Peaxi162Scf00293g00815 Petunia axillaris HOM05D006472 ORTHO05D008222 3.0e-25 121.3 104 58.7
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 3.7e-20 104.4 71 70.4
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 1.9e-19 102.1 69 69.6
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 1.3e-12 79.3 681 22.2
Actinidia23826 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.2e-10 72.8 66 63.6
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.9e-08 65.5 50 54.0
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 3.6e-07 61.2 45 64.4


User provided reference genes

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