Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.8e-159 565.8 432 100.0
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 3.0e-137 492.7 418 91.1
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.7e-108 397.1 426 78.6
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 6.5e-92 342.0 369 75.9
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.4e-86 323.6 432 67.8
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.5e-83 312.4 378 74.1
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.0e-81 308.1 430 66.3
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.0e-81 306.6 379 71.5
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 5.7e-80 302.4 375 72.0
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 2.8e-79 300.1 406 68.2
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 3.7e-79 299.7 377 71.1
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 4.8e-79 299.3 374 71.9
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 6.3e-79 298.9 376 69.9
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.3e-76 291.2 413 65.1
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 2.9e-76 290.0 427 61.1
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 6.5e-76 288.9 379 72.8
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.5e-76 288.9 379 72.8
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 2.5e-75 287.0 378 68.0
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.2e-75 286.6 378 68.5
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.1e-74 283.9 408 61.8
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 6.1e-74 282.3 377 67.9
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.0e-73 281.6 379 72.3
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.0e-73 281.6 379 72.8
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.8e-73 280.8 376 67.0
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.8e-73 280.8 379 72.0
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.3e-73 280.4 378 66.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 3.0e-73 280.0 375 71.5
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.1e-72 278.1 374 70.6
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 1.5e-72 277.7 374 70.9
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.0e-72 277.3 376 69.4
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 2.6e-72 276.9 380 69.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 3.3e-72 276.6 373 68.1
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 4.4e-72 276.2 422 61.6
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 5.7e-72 275.8 376 69.1
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 5.7e-72 275.8 315 73.7
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 5.7e-72 275.8 401 68.1
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 7.4e-72 275.4 375 68.5
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 7.4e-72 275.4 380 65.8
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 9.7e-72 275.0 315 74.3
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 1.3e-71 274.6 379 68.9
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.2e-71 273.9 382 69.1
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.8e-71 273.5 382 69.4
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 4.8e-71 272.7 375 69.6
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.8e-71 272.7 374 70.6
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 4.8e-71 272.7 376 71.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 4.8e-71 272.7 360 71.9
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 1.4e-70 271.2 403 66.5
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-70 271.2 380 70.5
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 1.8e-70 270.8 350 71.4
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.8e-70 270.8 418 63.4
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.8e-70 270.8 374 68.4
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 5.3e-70 269.2 373 69.2
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.2e-69 268.1 374 66.8
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 2.0e-69 267.3 377 68.4
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 3.5e-69 266.5 374 69.0
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 4.5e-69 266.2 374 65.5
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.3e-68 264.6 376 69.4
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 1.3e-68 264.6 377 67.4
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 6.5e-68 262.3 380 67.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.1e-67 261.5 377 66.0
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 4.2e-67 259.6 380 70.0
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 7.2e-67 258.8 375 65.6
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 2.7e-66 256.9 405 64.4
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 3.6e-66 256.5 376 62.5
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.7e-66 256.1 376 62.5
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 6.1e-66 255.8 403 62.3
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.8e-65 254.2 374 68.7
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.8e-65 254.2 375 69.3
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 3.0e-65 253.4 376 70.5
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.0e-65 253.1 424 57.5
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 4.0e-65 253.1 376 69.9
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 6.8e-65 252.3 373 67.6
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.4e-64 250.0 405 62.0
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 4.4e-64 249.6 378 67.7
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.3e-63 248.1 414 61.6
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.7e-63 247.7 379 62.3
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 4.8e-63 246.1 380 66.8
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 6.3e-63 245.7 414 61.8
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 6.3e-63 245.7 378 60.8
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 8.3e-63 245.4 424 59.0
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 4.1e-62 243.0 377 68.7
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 7.0e-62 242.3 362 63.3
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 7.0e-62 242.3 321 68.2
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 9.1e-62 241.9 378 64.3
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 9.1e-62 241.9 377 66.8
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 9.1e-62 241.9 403 60.5
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.2e-61 241.5 322 69.9
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.2e-61 241.5 376 68.1
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 5.9e-61 239.2 375 65.3
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.0e-60 238.4 378 67.7
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.3e-60 238.0 411 59.1
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.2e-60 237.3 377 66.3
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 3.8e-60 236.5 376 62.2
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.2e-59 233.0 378 66.1
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 5.5e-59 232.6 378 66.4
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 9.4e-59 231.9 378 66.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 1.6e-58 231.1 362 66.0
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 2.3e-57 227.3 385 62.9
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.2e-55 220.7 378 65.1
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 6.3e-55 219.2 326 66.3
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 1.8e-54 217.6 384 62.0
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.1e-54 216.9 349 60.7
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 3.1e-54 216.9 383 64.5
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.0e-54 215.7 384 56.8
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 1.2e-53 214.9 342 61.7
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.7e-53 213.8 388 61.3
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.5e-53 213.4 384 59.1
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 4.5e-53 213.0 408 59.1
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 7.7e-53 212.2 408 58.8
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 3.8e-52 209.9 384 62.5
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 6.6e-52 209.1 384 58.9
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 1.1e-51 208.4 377 66.0
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 1.6e-50 204.5 379 59.1
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.1e-50 204.1 382 58.6
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.1e-50 204.1 382 58.6
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.1e-50 204.1 382 58.6
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 2.8e-50 203.8 180 55.0
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 8.0e-50 202.2 386 57.3
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 1.8e-49 201.1 386 58.3
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 1.8e-49 201.1 386 58.3
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 6.8e-49 199.1 271 73.4
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 2.6e-48 197.2 410 37.3
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.4e-48 196.8 379 64.9
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.8e-46 191.0 381 62.2
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.4e-46 189.5 423 58.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 3.5e-45 186.8 383 61.9
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 3.5e-45 186.8 383 61.9
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 1.7e-44 184.5 383 61.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 9.5e-43 178.7 379 62.0
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 3.6e-42 176.8 438 50.7
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 2.0e-40 171.0 337 50.7
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 2.4e-38 164.1 380 41.8
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 1.2e-37 161.8 381 53.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 4.6e-37 159.8 377 59.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.7e-36 157.9 369 59.6
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 8.6e-36 155.6 390 54.1
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 8.1e-34 149.1 383 58.2
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.1e-33 148.7 283 68.6
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.8e-33 147.9 383 58.0
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.8e-33 147.9 383 58.0
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 2.3e-33 147.5 328 57.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.3e-33 147.5 116 62.1
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 5.2e-33 146.4 375 58.7
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.5e-32 144.8 393 53.2
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 9.8e-32 142.1 164 45.1
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 1.4e-30 138.3 387 45.7
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.9e-30 137.9 328 60.7
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 2.4e-30 137.5 214 39.7
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.6e-29 134.8 392 55.1
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 3.5e-29 133.7 187 40.1
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 4.6e-29 133.3 281 71.2
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.5e-27 127.5 257 68.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 5.6e-27 126.3 412 44.7
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.0e-24 117.9 394 50.8
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.4e-22 111.7 378 45.0
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 6.0e-21 106.3 118 63.6
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.3e-20 104.4 87 62.1
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.1e-19 102.1 100 62.0
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.1e-18 97.8 248 73.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.2e-18 96.3 100 55.0
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.4e-17 95.1 204 30.9
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.3e-15 88.6 107 47.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.7e-15 88.2 92 45.7
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 8.7e-12 75.9 109 37.6
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 2.5e-11 74.3 152 28.3
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 5.3e-09 66.6 111 59.5
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 4.4e-08 63.5 167 29.3


User provided reference genes

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