Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 8.8e-74 280.4 164 100.0
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.2e-49 200.3 128 87.5
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 2.8e-27 125.9 225 40.9
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 3.6e-27 125.6 231 41.1
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.1e-18 95.9 135 45.2
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 2.0e-17 93.2 70 64.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 9.9e-17 90.9 140 42.1
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 2.9e-16 89.4 62 69.4
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 2.9e-16 89.4 64 64.1
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 3.8e-16 89.0 103 49.5
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.9e-16 88.6 108 51.9
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 6.4e-16 88.2 60 68.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 6.4e-16 88.2 60 70.0
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 8.4e-16 87.8 67 62.7
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 8.4e-16 87.8 63 68.3
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.9e-15 86.7 60 68.3
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.9e-15 86.7 91 51.6
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 1.9e-15 86.7 67 59.7
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 3.2e-15 85.9 83 57.8
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 4.2e-15 85.5 115 47.0
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 4.2e-15 85.5 95 49.5
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 7.1e-15 84.7 85 60.0
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 7.1e-15 84.7 90 48.9
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 9.2e-15 84.3 99 50.5
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 9.2e-15 84.3 60 66.7
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 9.2e-15 84.3 147 40.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 9.2e-15 84.3 90 52.2
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-14 84.0 123 44.7
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 1.2e-14 84.0 123 44.7
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.2e-14 84.0 60 65.0
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.6e-14 83.6 114 45.6
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 2.1e-14 83.2 60 65.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.1e-14 83.2 65 58.5
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 2.1e-14 83.2 65 58.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.7e-14 82.8 84 53.6
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 2.7e-14 82.8 112 44.6
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 4.6e-14 82.0 133 41.4
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 4.6e-14 82.0 64 57.8
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 7.8e-14 81.3 65 56.9
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 7.8e-14 81.3 65 56.9
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 7.8e-14 81.3 84 52.4
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 1.0e-13 80.9 108 42.6
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.3e-13 80.5 60 65.0
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 1.7e-13 80.1 85 51.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.3e-13 79.7 110 45.5
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 2.3e-13 79.7 127 42.5
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 3.0e-13 79.3 53 73.6
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.9e-13 79.0 60 61.7
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 5.1e-13 78.6 107 47.7
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 8.7e-13 77.8 60 61.7
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 8.7e-13 77.8 78 55.1
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-12 77.4 103 47.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.1e-12 77.4 60 60.0
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.5e-12 77.0 107 43.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 1.5e-12 77.0 96 44.8
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 1.5e-12 77.0 60 61.7
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.5e-12 76.3 44 77.3
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.5e-12 76.3 71 54.9
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.3e-12 75.9 92 46.7
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.3e-12 75.9 92 46.7
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.3e-12 75.9 98 43.9
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.3e-12 75.5 102 46.1
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.3e-12 75.5 92 46.7
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 4.3e-12 75.5 112 42.0
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 5.6e-12 75.1 86 46.5
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 7.3e-12 74.7 92 50.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 9.6e-12 74.3 108 39.8
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 1.2e-11 73.9 95 45.3
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.2e-11 73.9 88 50.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-11 73.6 95 47.4
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-11 73.6 95 47.4
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.6e-11 73.6 101 44.6
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.1e-11 73.2 92 46.7
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.1e-11 73.2 64 59.4
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 2.1e-11 73.2 107 43.0
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.1e-11 73.2 93 49.5
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.8e-11 72.8 101 44.6
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.8e-11 72.8 86 46.5
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.8e-11 72.8 92 48.9
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 2.8e-11 72.8 92 48.9
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.8e-11 72.8 86 47.7
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 3.6e-11 72.4 60 58.3
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 3.6e-11 72.4 96 45.8
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.6e-11 72.4 89 44.9
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 3.6e-11 72.4 62 59.7
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 4.7e-11 72.0 96 44.8
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.7e-11 72.0 96 42.7
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 6.2e-11 71.6 82 48.8
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.2e-11 71.6 60 56.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 6.2e-11 71.6 112 41.1
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 6.2e-11 71.6 85 44.7
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 8.1e-11 71.2 75 48.0
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 8.1e-11 71.2 69 55.1
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 8.1e-11 71.2 101 52.5
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.1e-10 70.9 59 61.0
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.1e-10 70.9 59 61.0
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.1e-10 70.9 100 44.0
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 1.1e-10 70.9 57 57.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 1.4e-10 70.5 91 45.1
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 1.4e-10 70.5 77 48.1
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.1e-10 69.3 69 50.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.2e-10 68.6 99 40.4
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.9e-10 68.2 92 46.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 1.5e-09 67.0 115 39.1
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 1.5e-09 67.0 89 47.2
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.0e-09 66.6 104 43.3
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 2.0e-09 66.6 91 42.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 2.6e-09 66.2 89 46.1
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 4.4e-09 65.5 84 47.6
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 4.4e-09 65.5 84 47.6
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 4.4e-09 65.5 74 47.3
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 5.8e-09 65.1 71 45.1
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 9.9e-09 64.3 68 52.9
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 9.9e-09 64.3 58 55.2
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 1.3e-08 63.9 114 36.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 1.3e-08 63.9 106 40.6
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.3e-08 63.9 106 40.6
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.7e-08 63.5 105 43.8
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.9e-08 62.8 74 47.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 4.9e-08 62.0 81 42.0
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 8.4e-08 61.2 124 33.9
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 8.4e-08 61.2 54 51.9
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.9e-07 60.1 102 40.2
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.2e-07 59.3 113 38.9
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.2e-06 57.4 101 42.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.2e-06 57.4 80 38.8
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 2.1e-06 56.6 43 53.5
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 4.6e-06 55.5 43 53.5
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 4.6e-06 55.5 61 44.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 6.0e-06 55.1 91 38.5


User provided reference genes

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