Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.1e-206 723.0 363 100.0
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.6e-200 702.6 363 96.4
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 1.6e-184 649.4 363 87.6
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 4.7e-160 568.2 364 74.2
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 2.8e-157 558.9 364 74.7
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 4.1e-156 555.1 363 72.5
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 2.2e-154 549.3 364 73.1
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.9e-154 548.9 367 73.6
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.5e-153 546.6 363 71.9
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 2.5e-153 545.8 361 71.2
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.5e-153 545.8 361 73.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 1.6e-152 543.1 361 71.7
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 4.0e-151 538.5 358 72.1
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 5.2e-151 538.1 363 71.9
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.5e-150 536.6 419 64.9
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 2.0e-150 536.2 361 72.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.6e-150 535.8 364 71.2
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 3.4e-150 535.4 364 70.3
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 4.4e-150 535.0 363 72.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 5.7e-150 534.6 372 70.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 7.5e-150 534.3 363 71.6
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 9.8e-150 533.9 361 72.0
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-148 529.6 362 69.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 1.8e-148 529.6 364 69.2
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.8e-148 529.6 372 69.1
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 7.0e-148 527.7 362 69.3
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 7.0e-148 527.7 372 69.6
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.1e-148 527.3 362 69.3
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 1.6e-147 526.6 363 71.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 2.0e-147 526.2 363 69.1
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 5.9e-147 524.6 361 71.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 1.0e-146 523.9 364 69.8
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.3e-146 523.5 376 67.8
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.3e-146 522.7 364 68.1
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 2.3e-146 522.7 364 68.4
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.1e-145 520.4 364 67.9
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.5e-145 520.0 364 69.0
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.5e-145 520.0 362 70.2
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.9e-145 519.6 363 68.9
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 2.5e-145 519.2 362 68.2
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 2.5e-145 519.2 363 69.4
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.5e-145 519.2 362 69.9
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 2.5e-145 519.2 362 69.9
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 5.5e-145 518.1 369 69.1
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.7e-144 515.0 349 70.5
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.7e-144 515.0 349 70.5
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 1.8e-143 513.1 363 68.9
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 3.0e-143 512.3 361 67.9
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 6.8e-143 511.1 362 67.4
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.5e-142 510.0 365 67.9
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 4.4e-142 508.4 362 66.0
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 5.7e-142 508.1 362 66.0
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 9.8e-142 507.3 297 83.2
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 1.3e-141 506.9 349 68.8
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 2.2e-141 506.1 362 65.7
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 2.2e-141 506.1 369 69.9
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 2.2e-141 506.1 392 64.8
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 2.8e-141 505.8 356 67.1
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 4.9e-141 505.0 362 65.5
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 8.3e-141 504.2 352 67.9
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 1.4e-140 503.4 362 65.2
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 2.4e-140 502.7 357 66.4
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 2.4e-140 502.7 366 67.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 3.1e-140 502.3 361 66.5
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 9.2e-140 500.7 360 67.5
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.6e-139 500.0 362 64.9
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.6e-139 500.0 362 65.5
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.7e-139 499.2 362 65.5
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.5e-139 498.4 356 68.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 7.8e-139 497.7 352 68.8
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.7e-138 496.5 362 65.2
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 1.7e-138 496.5 362 65.2
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 3.8e-138 495.4 322 73.9
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-137 493.8 357 68.1
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.9e-137 493.0 362 64.6
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 2.5e-137 492.7 359 67.4
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 4.3e-137 491.9 397 63.5
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.3e-137 491.9 388 62.1
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 7.3e-137 491.1 388 61.9
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 9.5e-137 490.7 361 67.0
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.8e-136 489.2 383 65.3
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.6e-136 488.8 363 66.7
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.4e-135 486.9 388 61.6
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.2e-134 483.8 317 72.9
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.4e-134 482.3 397 63.0
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.4e-134 481.9 355 64.8
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.2e-133 479.6 364 65.7
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.4e-132 476.9 363 65.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 7.0e-132 474.6 362 63.8
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.0e-131 473.0 321 70.7
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 6.0e-131 471.5 364 63.5
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.3e-130 469.5 362 61.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 1.1e-129 467.2 362 63.8
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 1.1e-129 467.2 362 63.8
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 1.2e-128 463.8 354 63.3
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.6e-128 462.2 364 62.4
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.7e-125 453.4 356 63.2
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 2.2e-125 453.0 363 62.0
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.6e-123 446.8 375 61.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 1.6e-123 446.8 297 72.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.5e-123 445.7 363 60.3
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.5e-121 439.5 315 68.9
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 2.5e-121 439.5 365 61.4
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.1e-119 432.6 301 72.4
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 3.4e-118 429.1 332 65.1
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 7.1e-116 421.4 297 70.0
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-115 420.6 354 60.7
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 1.7e-114 416.8 292 66.8
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 5.6e-113 411.8 388 54.9
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 9.6e-105 384.4 364 55.8
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 8.1e-104 381.3 362 53.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.0e-102 376.7 364 55.5
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.4e-102 375.6 285 64.2
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.8e-101 372.5 363 55.4
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 9.3e-100 367.9 287 62.4
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 6.9e-95 351.7 349 51.0
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 5.8e-94 348.6 366 50.0
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 7.6e-94 348.2 361 51.5
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 2.2e-93 346.7 335 51.6
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 3.5e-91 339.3 338 49.7
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 6.0e-91 338.6 357 52.7
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 5.6e-89 332.0 316 52.5
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.4e-84 317.4 268 61.2
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 1.5e-57 227.6 152 69.7
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 3.1e-55 219.9 328 38.7
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 2.2e-53 213.8 136 72.8
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 5.0e-45 186.0 375 33.3
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 7.0e-39 165.6 148 58.8
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.7e-35 153.7 343 32.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.3e-32 144.8 96 70.8
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.0e-30 137.5 191 41.9
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.7e-30 137.1 103 62.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 1.6e-27 127.9 116 55.2
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.8e-27 127.1 138 48.6
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.8e-26 124.4 83 67.5
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 4.0e-26 123.2 352 27.3
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-25 121.3 83 65.1
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.7e-25 119.4 87 62.1
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-23 115.2 83 62.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.6e-21 105.9 91 58.2
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-20 104.4 110 49.1
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 2.5e-20 104.0 110 48.2
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.5e-20 102.1 79 58.2
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.7e-19 99.8 78 57.7
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.1e-19 99.4 78 57.7
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.1e-19 99.4 79 57.0
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-18 98.2 78 57.7
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-18 97.8 78 56.4
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 4.0e-18 96.7 79 57.0
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 8.9e-18 95.5 76 63.2
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-17 94.4 104 51.9
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.0e-17 94.4 78 53.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 3.4e-17 93.6 78 52.6
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 9.8e-17 92.0 79 54.4
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.7e-16 91.3 101 47.5
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.7e-16 90.1 69 59.4
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 7.0e-15 85.9 45 93.3
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-13 81.3 60 60.0
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-11 73.9 56 60.7
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-10 72.0 45 71.1
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.4e-10 71.6 67 56.7
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.4e-07 61.6 54 53.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-07 61.6 52 57.7
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.4e-07 61.6 43 65.1
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.9e-07 61.2 51 62.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 2.4e-07 60.8 42 64.3
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 7.0e-07 59.3 43 62.8


User provided reference genes

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