Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 8.2e-224 780.0 381 100.0
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 9.1e-215 750.0 381 95.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 5.8e-185 651.0 380 84.7
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 2.5e-180 635.6 401 80.0
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.5e-161 573.2 381 74.5
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.7e-160 569.7 381 73.2
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 8.4e-160 567.4 383 73.1
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.1e-159 567.0 377 73.2
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 1.9e-159 566.2 379 75.7
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.6e-158 563.1 379 71.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 4.6e-158 561.6 380 71.8
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 1.0e-157 560.5 383 71.3
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.7e-157 559.7 378 72.5
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 6.6e-157 557.8 380 71.1
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.1e-156 557.0 382 71.5
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.1e-156 557.0 382 71.5
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.3e-156 555.4 383 71.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.3e-156 555.4 401 69.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.3e-156 555.1 383 71.3
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 4.3e-156 555.1 383 70.8
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 5.6e-156 554.7 382 72.0
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 5.6e-156 554.7 382 71.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 9.6e-156 553.9 382 72.8
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.6e-156 553.9 380 71.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.2e-155 553.5 380 70.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.1e-155 552.7 381 71.1
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.6e-155 552.0 381 72.4
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.6e-155 552.0 382 70.2
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 8.1e-155 550.8 381 70.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-154 550.4 383 70.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-154 550.4 379 70.7
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 1.4e-154 550.1 405 66.4
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-154 549.7 379 71.8
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 2.4e-154 549.3 377 70.8
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.0e-154 548.5 380 71.3
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.2e-153 547.0 376 72.1
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.2e-153 547.0 382 70.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 1.5e-153 546.6 380 70.3
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 1.5e-153 546.6 380 71.1
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 5.8e-153 544.7 381 69.3
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 7.6e-153 544.3 319 79.9
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 9.9e-153 543.9 382 71.5
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 9.9e-153 543.9 381 70.6
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 9.9e-153 543.9 378 70.1
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.3e-152 543.5 379 69.7
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.3e-152 543.5 393 67.9
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.3e-152 543.5 383 70.0
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.7e-152 543.1 380 71.6
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.2e-152 542.7 397 68.5
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 4.9e-152 541.6 376 70.2
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 8.4e-152 540.8 319 78.7
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.1e-151 540.4 385 69.4
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-151 540.4 383 70.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.1e-151 540.4 378 70.4
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.4e-151 540.0 381 69.3
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.4e-151 540.0 365 71.8
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.9e-151 539.7 320 79.1
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.4e-151 539.3 380 68.7
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.4e-151 539.3 377 69.5
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 4.2e-151 538.5 381 71.4
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 7.1e-151 537.7 382 71.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.6e-150 536.6 382 69.9
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.5e-150 535.4 358 74.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 3.5e-150 535.4 373 71.3
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 4.6e-150 535.0 332 77.4
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.0e-150 534.6 381 69.3
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.3e-149 533.5 380 70.8
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.0e-149 532.3 382 68.8
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.0e-149 532.3 386 69.2
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.9e-149 531.9 316 79.1
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 5.1e-149 531.6 379 68.1
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.5e-148 530.0 382 68.1
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.5e-148 529.3 382 70.2
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 9.6e-148 527.3 381 66.7
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 4.8e-147 525.0 322 75.5
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 6.2e-147 524.6 380 68.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 6.2e-147 524.6 380 68.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-146 523.9 387 66.9
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.4e-146 523.5 381 66.4
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.4e-146 522.7 386 67.1
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-145 520.4 383 67.6
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.2e-145 520.4 383 67.6
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-145 520.4 380 68.4
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 2.0e-145 519.6 380 67.1
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.0e-145 519.6 379 67.5
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.6e-145 519.2 316 76.6
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 9.9e-145 517.3 383 67.6
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.7e-144 516.5 336 72.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.2e-144 516.2 340 72.1
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-144 515.4 307 79.2
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.8e-144 515.4 307 77.9
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 8.4e-144 514.2 315 76.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 8.4e-144 514.2 308 75.3
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 4.2e-143 511.9 323 73.7
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.6e-142 510.0 323 73.1
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 2.7e-142 509.2 381 67.5
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.7e-142 509.2 348 73.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-141 506.5 381 67.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-141 506.1 381 67.2
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.0e-141 505.8 315 74.9
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 8.7e-141 504.2 360 68.1
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 1.5e-140 503.4 379 66.2
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.5e-140 502.7 400 64.2
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.8e-139 498.4 380 64.7
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 6.2e-139 498.0 349 70.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 1.8e-138 496.5 381 66.7
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-138 495.4 316 73.1
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 2.6e-137 492.7 306 74.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.8e-137 491.5 378 63.0
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 7.6e-137 491.1 380 65.3
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 6.4e-136 488.0 315 73.7
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.4e-135 486.9 317 71.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.9e-135 486.5 317 71.9
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 4.2e-135 485.3 352 69.0
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 5.5e-135 485.0 387 64.9
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 6.7e-133 478.0 380 63.4
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 8.7e-133 477.6 310 71.6
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 1.1e-132 477.2 301 70.8
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.5e-132 476.9 311 72.7
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 4.0e-130 468.8 378 62.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.5e-129 466.8 320 70.0
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.0e-129 466.5 352 67.6
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-128 463.8 326 71.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.2e-127 459.1 350 67.7
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 5.1e-125 451.8 327 67.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.6e-123 446.8 293 69.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-120 436.0 257 78.2
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 2.9e-120 436.0 257 78.2
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.2e-119 432.6 318 62.6
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.7e-117 424.9 387 58.9
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.7e-117 424.9 291 63.6
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 6.7e-117 424.9 241 82.2
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 3.4e-113 412.5 315 61.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.4e-111 407.1 329 57.8
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 8.8e-109 397.9 318 57.5
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.7e-107 393.7 270 71.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.0e-104 384.4 327 61.5
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 5.5e-103 378.6 303 65.0
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.0e-101 372.9 297 58.9
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.2e-99 366.7 310 60.6
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.2e-99 366.7 227 77.5
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 9.1e-98 361.3 378 50.8
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.2e-91 340.1 236 73.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.9e-89 332.0 196 78.1
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 5.0e-88 328.9 196 77.6
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-87 327.4 305 55.4
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.7e-83 313.9 226 70.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.1e-74 284.6 344 45.1
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-72 278.1 343 46.6
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 3.9e-72 276.2 195 71.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 3.3e-71 273.1 219 65.3
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 9.8e-68 261.5 299 45.5
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.3e-67 261.2 295 48.1
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.7e-65 253.4 304 44.7
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 9.2e-50 201.8 153 67.3
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.7e-48 197.6 112 77.7
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.4e-44 183.3 340 37.9
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.7e-43 181.0 184 54.3
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-36 158.3 131 65.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-36 157.9 94 83.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 3.4e-36 156.8 92 83.7
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 5.8e-36 156.0 131 64.9
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-35 153.3 92 81.5
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 4.9e-35 152.9 131 63.4
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.1e-34 151.8 94 78.7
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-29 135.2 97 73.2
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 9.9e-28 128.6 77 75.3
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.9e-27 126.3 66 87.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.2e-26 123.2 334 27.2
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 4.6e-25 119.8 73 72.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.5e-23 114.8 133 51.1
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.3e-23 113.6 60 83.3
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 9.6e-23 112.1 92 66.3
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.0e-19 102.1 116 50.9
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.6e-17 93.2 62 72.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 7.4e-15 85.9 107 45.8
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.3e-14 85.1 247 29.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.6e-12 77.4 47 78.7
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-11 75.1 41 82.9
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.1e-10 72.0 73 50.7
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.6e-09 68.2 102 40.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 69.0
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 69.0
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 8.7e-08 62.4 33 90.9


User provided reference genes

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