Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.1e-144 515.8 280 100.0
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 2.1e-136 489.2 290 93.8
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 3.5e-107 392.1 290 76.9
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.5e-102 376.7 298 71.5
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 5.8e-102 374.8 290 73.4
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 8.7e-98 360.9 293 70.6
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.9e-97 359.8 288 71.9
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.3e-97 359.0 299 71.9
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 1.1e-95 354.0 301 69.8
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 4.1e-95 352.1 277 71.5
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 4.1e-95 352.1 285 69.8
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 5.3e-95 351.7 280 71.4
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 6.9e-95 351.3 298 68.8
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.0e-94 349.7 300 66.0
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.4e-94 349.0 290 70.0
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 7.7e-94 347.8 286 68.2
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.2e-93 346.3 291 69.4
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 1.1e-92 344.0 294 69.0
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.5e-92 342.8 286 68.2
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 3.2e-92 342.4 286 69.9
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 4.2e-92 342.0 298 66.4
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 7.2e-92 341.3 287 69.3
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 7.2e-92 341.3 297 67.7
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.2e-91 340.5 286 67.8
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.2e-91 340.5 286 67.8
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.6e-91 340.1 278 70.5
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 2.1e-91 339.7 288 69.4
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 3.6e-91 339.0 297 68.4
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.6e-91 339.0 297 68.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 6.1e-91 338.2 297 68.4
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 1.0e-90 337.4 288 68.8
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.8e-90 336.7 295 66.8
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.3e-90 336.3 304 65.5
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 3.9e-90 335.5 286 69.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 8.8e-90 334.3 293 65.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 1.1e-89 334.0 294 67.7
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.5e-89 333.6 275 67.3
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.5e-89 333.6 279 68.8
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.0e-89 333.2 294 67.7
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 2.5e-89 332.8 286 68.2
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 2.5e-89 332.8 284 67.3
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 7.4e-89 331.3 293 67.6
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 9.7e-89 330.9 295 67.1
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.3e-88 330.5 301 65.8
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 1.3e-88 330.5 294 68.0
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.3e-88 330.5 269 68.0
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.2e-88 329.7 298 65.8
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.8e-88 329.3 294 66.3
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 2.8e-88 329.3 299 64.9
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.1e-87 327.4 294 67.3
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 1.8e-87 326.6 283 66.4
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.4e-87 326.2 287 67.6
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 2.4e-87 326.2 287 67.2
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 3.1e-87 325.9 296 65.9
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 3.1e-87 325.9 286 65.7
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 3.1e-87 325.9 289 67.1
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 4.1e-87 325.5 299 66.9
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 5.3e-87 325.1 209 81.8
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 5.3e-87 325.1 294 65.3
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.0e-86 323.2 285 65.6
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 2.0e-86 323.2 281 68.7
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.0e-86 323.2 290 66.6
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.6e-86 322.8 296 64.2
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 3.4e-86 322.4 301 64.5
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 3.4e-86 322.4 295 67.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 5.9e-86 321.6 293 62.8
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 1.0e-85 320.9 293 64.5
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.2e-85 319.7 276 65.9
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 2.2e-85 319.7 279 67.4
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 2.9e-85 319.3 292 63.7
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 3.8e-85 318.9 282 64.9
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 5.0e-85 318.5 286 67.8
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 5.0e-85 318.5 293 65.9
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 6.5e-85 318.2 292 65.8
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.1e-84 317.4 293 65.9
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.1e-84 317.4 294 65.0
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.4e-84 317.0 284 65.1
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.9e-84 316.6 285 62.8
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.5e-84 315.1 293 65.5
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 7.2e-84 314.7 283 67.8
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 1.6e-83 313.5 293 63.8
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.6e-83 312.4 287 65.2
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 4.7e-83 312.0 273 65.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 6.1e-83 311.6 276 66.7
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 6.1e-83 311.6 269 67.3
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 7.9e-83 311.2 293 63.5
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.4e-82 310.5 286 64.0
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.4e-82 310.5 305 63.6
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.4e-82 310.5 294 63.3
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 5.1e-82 308.5 290 63.8
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 6.7e-82 308.1 291 61.9
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 8.8e-82 307.8 292 64.7
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.8e-82 307.8 294 65.0
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.5e-81 307.0 186 84.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.5e-81 307.0 274 64.6
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 2.6e-81 306.2 273 65.6
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 5.7e-81 305.1 287 63.4
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 7.4e-81 304.7 296 62.2
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 1.7e-80 303.5 195 80.5
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 3.7e-80 302.4 299 61.5
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.1e-79 300.8 249 67.5
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.1e-79 300.8 249 67.5
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 1.8e-79 300.1 260 66.5
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 1.8e-79 300.1 288 61.5
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 1.8e-79 300.1 288 61.8
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 2.4e-79 299.7 289 62.3
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.1e-79 299.3 287 62.7
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 3.1e-79 299.3 286 63.6
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 5.3e-79 298.5 289 61.9
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 7.0e-79 298.1 297 59.9
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 9.1e-79 297.7 275 64.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 1.5e-78 297.0 267 64.8
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 3.5e-78 295.8 289 60.9
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 5.9e-78 295.0 275 63.6
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 7.7e-78 294.7 297 59.9
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-77 293.9 288 61.5
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.3e-77 293.9 294 61.9
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.2e-77 293.1 192 79.2
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.2e-77 293.1 349 55.9
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 2.2e-77 293.1 347 55.0
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 5.0e-77 292.0 260 65.0
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 5.0e-77 292.0 260 65.4
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.9e-76 290.0 265 63.8
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 2.5e-76 289.7 260 65.4
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 2.3e-74 283.1 348 52.0
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 5.2e-74 282.0 185 79.5
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.5e-73 280.4 279 56.3
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 4.4e-73 278.9 182 78.6
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.4e-73 278.1 248 62.5
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 9.7e-73 277.7 189 75.1
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 1.1e-71 274.2 274 58.4
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.4e-71 273.1 285 57.2
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 4.1e-71 272.3 269 62.5
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.7e-69 266.9 248 62.9
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.2e-69 266.5 190 70.5
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.5e-68 263.8 189 69.8
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 3.2e-68 262.7 188 68.6
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 9.4e-68 261.2 272 57.4
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.6e-67 260.4 228 61.0
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 3.6e-67 259.2 195 69.2
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 2.3e-66 256.5 202 64.4
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.2e-65 254.2 324 51.9
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 9.8e-65 251.1 230 64.3
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.8e-63 246.9 191 69.6
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.7e-56 223.8 181 64.6
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 5.0e-53 212.2 189 61.4
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.5e-49 200.7 203 58.1
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.0e-45 188.0 183 55.7
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 9.5e-44 181.4 182 58.2
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 8.6e-37 158.3 107 82.2
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 7.3e-36 155.2 285 41.4
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 4.0e-34 149.4 190 45.8
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.2e-33 147.9 89 79.8
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.2e-32 143.7 156 53.8
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 3.1e-26 123.2 196 40.8
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 3.1e-26 123.2 120 57.5
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 3.4e-25 119.8 250 36.4
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 6.0e-22 109.0 87 62.1
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.9e-20 104.0 63 81.0
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 3.3e-20 103.2 78 76.9
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 5.6e-20 102.4 63 79.4
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 2.4e-15 87.0 184 35.3
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 5.6e-12 75.9 60 66.7


User provided reference genes

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