Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 0.0e+00 1474.5 818 100.0
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 0.0e+00 1263.1 816 85.8
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 1.9e-225 786.6 770 59.2
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.2e-201 706.1 840 50.1
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 6.6e-178 628.6 907 47.3
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 4.9e-141 506.1 811 44.6
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 1.7e-117 427.9 739 38.2
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 9.3e-116 422.2 720 38.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 1.6e-112 411.4 750 36.0
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.4e-111 407.5 756 36.8
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 4.1e-111 406.8 675 37.9
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 6.9e-111 406.0 725 37.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.2e-107 395.2 746 36.2
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 2.7e-107 394.0 722 36.6
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.0e-106 392.1 813 37.1
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.1e-103 380.6 767 35.9
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 4.1e-103 380.2 758 36.5
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 3.4e-102 377.1 743 35.7
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.9e-101 374.0 862 36.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 8.5e-101 372.5 780 35.8
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 1.1e-100 372.1 750 34.5
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 5.5e-100 369.8 755 35.8
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.4e-100 369.0 726 35.0
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.2e-99 368.6 708 34.9
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 1.6e-99 368.2 708 35.0
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 1.6e-99 368.2 708 34.9
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 1.6e-99 368.2 743 34.5
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.4e-98 365.2 739 35.2
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.1e-97 362.1 734 35.6
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 3.3e-97 360.5 726 39.4
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 9.7e-97 359.0 687 34.9
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 1.3e-96 358.6 836 33.5
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 3.7e-96 357.1 788 34.5
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 6.3e-96 356.3 744 38.0
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 8.2e-96 355.9 755 37.9
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 3.1e-95 354.0 838 33.5
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.1e-95 354.0 733 34.8
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 4.1e-95 353.6 831 32.9
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 5.3e-95 353.2 836 33.5
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.0e-94 351.3 747 33.5
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 5.9e-94 349.7 673 35.2
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.0e-93 349.0 749 34.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.2e-93 347.8 739 33.4
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 2.9e-93 347.4 820 32.6
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.9e-93 347.4 756 36.8
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 2.9e-93 347.4 744 34.3
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 6.1e-91 339.7 769 36.9
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.0e-90 339.0 827 31.6
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 5.2e-90 336.7 711 34.3
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.7e-90 336.3 774 33.5
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 2.6e-89 334.3 714 32.2
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 4.4e-89 333.6 748 36.2
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 4.4e-89 333.6 778 34.1
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.4e-87 327.8 717 32.4
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 3.1e-87 327.4 739 35.5
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 7.0e-87 326.2 755 34.2
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.6e-86 325.1 739 34.2
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 2.0e-86 324.7 728 34.2
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 7.7e-86 322.8 722 31.9
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-85 322.0 787 37.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.7e-85 321.6 702 34.3
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 1.1e-84 318.9 712 34.3
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 1.5e-84 318.5 730 33.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 1.9e-84 318.2 721 33.6
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.9e-84 318.2 764 36.6
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 5.5e-84 316.6 748 33.2
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 7.2e-84 316.2 711 31.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 7.2e-84 316.2 809 31.1
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.2e-83 315.5 863 32.7
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.6e-83 315.1 709 32.9
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.1e-83 313.2 794 37.2
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 8.0e-83 312.8 720 33.5
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 1.4e-82 312.0 705 33.5
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 8.8e-82 309.3 721 33.0
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 3.3e-81 307.4 747 31.7
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 3.3e-81 307.4 754 34.1
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 9.7e-81 305.8 718 32.9
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 8.2e-80 302.8 724 32.3
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.1e-79 302.4 654 34.6
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 1.8e-79 301.6 714 31.9
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.1e-79 300.4 714 31.7
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 4.1e-79 300.4 722 33.0
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 7.0e-79 299.7 719 33.5
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 2.0e-78 298.1 714 31.5
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 2.7e-78 297.7 690 33.2
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 2.7e-78 297.7 767 31.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 5.9e-78 296.6 741 30.8
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 8.5e-77 292.7 720 32.2
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 3.2e-76 290.8 722 31.7
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.2e-76 290.8 639 33.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.6e-75 288.5 744 30.9
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.5e-73 282.0 693 31.7
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 3.4e-73 280.8 901 31.9
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 7.5e-73 279.6 769 30.4
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.3e-72 278.9 716 31.3
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-72 278.9 761 35.6
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 2.7e-70 271.2 771 30.0
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 3.8e-69 267.3 892 28.5
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 1.1e-68 265.8 765 29.4
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 2.8e-67 261.2 724 29.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.7e-64 251.9 690 30.0
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.4e-63 248.8 577 34.1
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 4.1e-63 247.3 886 28.2
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 7.0e-63 246.5 757 29.2
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 5.6e-60 236.9 846 27.4
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.2e-59 235.7 930 26.6
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 6.1e-59 233.4 712 29.4
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.4e-58 232.3 738 33.2
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 8.9e-58 229.6 800 27.5
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 2.2e-56 224.9 569 31.8
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 3.2e-55 221.1 685 27.7
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 4.6e-54 217.2 727 29.3
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 8.9e-50 203.0 267 43.1
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 1.2e-46 192.6 714 25.4
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 2.3e-42 178.3 296 38.9
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.3e-40 172.6 162 51.2
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.3e-40 172.6 278 38.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 3.2e-39 167.9 401 31.4
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.2e-38 166.0 292 37.3
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.9e-37 161.0 809 24.4
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.9e-37 161.0 708 26.1
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 4.4e-33 147.5 259 37.8
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 2.9e-32 144.8 231 39.4
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 6.6e-29 133.7 186 40.3
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 6.2e-27 127.1 147 46.3
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.2e-25 122.9 148 44.6
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 2.0e-25 122.1 374 29.9
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 5.1e-21 107.5 150 38.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 2.8e-19 101.7 768 26.3
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 6.9e-18 97.1 81 56.8
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.5e-17 95.9 191 33.5
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.0e-17 95.5 259 29.7
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.4e-15 88.6 202 29.2
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 1.3e-13 82.8 390 29.7
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 3.0e-13 81.6 157 31.8
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 4.0e-10 71.2 168 28.0
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 9.0e-10 70.1 441 27.7
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.3e-08 66.2 74 45.9


User provided reference genes

Program Settings