Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038983 Chenopodium quinoa HOM05D002091 ORTHO05D002140 5.2e-58 227.6 127 100.0
AUR62036051 Chenopodium quinoa HOM05D002091 ORTHO05D002140 2.1e-30 136.0 76 96.1
EL10Ac9g20810 Beta vulgaris HOM05D002091 ORTHO05D002140 2.5e-20 102.4 88 68.2
Hund07914 Selenicereus undatus HOM05D002091 ORTHO05D002140 9.7e-20 100.5 88 69.3
Ah.01g004050 Amaranthus hybridus HOM05D002091 ORTHO05D002140 3.8e-16 88.6 89 61.8
HanXRQChr13g0399871 Helianthus annuus HOM05D002091 ORTHO05D002140 3.6e-14 82.0 89 59.6
Sc21g0003160 Simmondsia chinensis HOM05D002091 ORTHO05D002140 3.6e-14 82.0 89 62.9
Dinv10163 Davidia involucrata HOM05D002091 ORTHO05D002140 6.1e-14 81.3 86 57.0
ECA248G0199 Erigeron canadensis HOM05D002091 ORTHO05D002140 7.9e-14 80.9 90 60.0
Dinv17349 Davidia involucrata HOM05D002091 ORTHO05D002140 1.0e-13 80.5 87 57.5
Actinidia39327 Actinidia chinensis HOM05D002091 ORTHO05D002140 1.4e-13 80.1 91 56.0
HanXRQChr01g0027921 Helianthus annuus HOM05D002091 ORTHO05D002140 1.4e-13 80.1 89 57.3
Lsat_1_v5_gn_6_31181 Lactuca sativa HOM05D002091 ORTHO05D002140 1.4e-13 80.1 89 58.4
CSS0017392 Camellia sinensis var. sinensis HOM05D002091 ORTHO05D002140 2.3e-13 79.3 88 56.8
Manes.13G142700 Manihot esculenta HOM05D002091 ORTHO05D002140 2.3e-13 79.3 92 59.8
vmacro12339 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 3.0e-13 79.0 91 54.9
GSVIVG01020598001 Vitis vinifera HOM05D002091 ORTHO05D002140 3.0e-13 79.0 82 61.0
HanXRQChr02g0052161 Helianthus annuus HOM05D002091 ORTHO05D002140 3.9e-13 78.6 89 58.4
Dinv06863 Davidia involucrata HOM05D002091 ORTHO05D002140 6.7e-13 77.8 87 55.2
Rhsim04G0070900 Rhododendron simsii HOM05D002091 ORTHO05D002140 1.1e-12 77.0 84 57.1
CSS0015244 Camellia sinensis var. sinensis HOM05D002091 ORTHO05D002140 1.5e-12 76.6 84 58.3
vmacro09248 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 1.5e-12 76.6 84 57.1
Solyc07g053670.3 Solanum lycopersicum HOM05D002091 ORTHO05D002140 1.9e-12 76.3 85 56.5
PGSC0003DMG400009394 Solanum tuberosum HOM05D002091 ORTHO05D002140 4.3e-12 75.1 85 55.3
ECA238G3683 Erigeron canadensis HOM05D002091 ORTHO05D002140 5.7e-12 74.7 89 57.3
EL10Ac9g20809 Beta vulgaris HOM05D002091 ORTHO05D002140 1.7e-11 73.2 88 55.7
DCAR_013032 Daucus carota HOM05D002561 ORTHO05D006466 1.7e-11 73.2 83 50.6
Oeu045604.1 Olea europaea HOM05D002091 ORTHO05D002140 2.2e-11 72.8 87 50.6
Nitab4.5_0006815g0050 Nicotiana tabacum HOM05D002091 ORTHO05D002140 2.8e-11 72.4 96 47.9
Eucgr.K01049 Eucalyptus grandis HOM05D002091 ORTHO05D002140 3.7e-11 72.0 90 57.8
Rhsim06G0138100 Rhododendron simsii HOM05D002091 ORTHO05D002140 3.7e-11 72.0 89 53.9
Hund01047 Selenicereus undatus HOM05D002091 ORTHO05D002140 3.7e-11 72.0 107 49.5
Sopen07g027640 Solanum pennellii HOM05D002091 ORTHO05D002140 4.8e-11 71.6 85 54.1
TAR624G0503 Trochodendron aralioides HOM05D002091 ORTHO05D002140 6.3e-11 71.2 87 50.6
Actinidia26140 Actinidia chinensis HOM05D002091 ORTHO05D002140 8.2e-11 70.9 89 52.8
Hma1.2p1_0558F.1_g178560 Hydrangea macrophylla HOM05D002091 ORTHO05D002140 8.2e-11 70.9 82 52.4
Lsat_1_v5_gn_8_133740 Lactuca sativa HOM05D002091 ORTHO05D002140 8.2e-11 70.9 92 51.1
QL08p040000 Quercus lobata HOM05D002091 ORTHO05D002140 1.1e-10 70.5 101 52.5
Nitab4.5_0003076g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 1.4e-10 70.1 84 53.6
TAR624G0411 Trochodendron aralioides HOM05D002091 ORTHO05D002140 1.8e-10 69.7 82 50.0
CAN.G209.7 Capsicum annuum HOM05D002091 ORTHO05D002140 2.4e-10 69.3 85 51.8
Glyma.12G206300 Glycine max HOM05D002091 ORTHO05D002140 2.4e-10 69.3 84 52.4
Glyma.13G294600 Glycine max HOM05D002091 ORTHO05D002140 2.4e-10 69.3 84 52.4
Cc05_g07660 Coffea canephora HOM05D002091 ORTHO05D002140 3.1e-10 68.9 87 48.3
TAR626G1951 Trochodendron aralioides HOM05D002091 ORTHO05D002140 5.3e-10 68.2 86 51.2
Migut.B01464 Erythranthe guttata HOM05D002091 ORTHO05D002140 6.9e-10 67.8 86 47.7
PSO541G0554 Papaver somniferum HOM05D002091 ORTHO05D002140 6.9e-10 67.8 84 52.4
Nitab4.5_0002773g0030 Nicotiana tabacum HOM05D002091 ORTHO05D002140 9.1e-10 67.4 87 49.4
Oeu033606.1 Olea europaea HOM05D002091 ORTHO05D002140 9.1e-10 67.4 87 48.3
Phvul.005G101000 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 9.1e-10 67.4 86 50.0
Potri.007G137500 Populus trichocarpa HOM05D002091 ORTHO05D002140 9.1e-10 67.4 89 49.4
TWI59G0581 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 9.1e-10 67.4 91 52.7
Actinidia16569 Actinidia chinensis HOM05D002091 ORTHO05D002140 1.5e-09 66.6 89 52.8
Nitab4.5_0000516g0100 Nicotiana tabacum HOM05D002091 ORTHO05D002140 1.5e-09 66.6 88 52.3
TWI56G0819 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 1.5e-09 66.6 91 53.8
COL.COLO4_18048 Corchorus olitorius HOM05D002091 ORTHO05D002140 2.0e-09 66.2 88 50.0
Lsat_1_v5_gn_4_51900 Lactuca sativa HOM05D002091 ORTHO05D002140 2.6e-09 65.9 99 48.5
Sabra07G0110400 Salix brachista HOM05D002091 ORTHO05D002140 2.6e-09 65.9 109 44.0
Sabra11G0039200 Salix brachista HOM05D002091 ORTHO05D002140 2.6e-09 65.9 95 49.5
Thecc.02G185200 Theobroma cacao HOM05D002091 ORTHO05D002140 2.6e-09 65.9 86 53.5
Prupe.3G134600 Prunus persica HOM05D002091 ORTHO05D002140 3.4e-09 65.5 90 51.1
HanXRQChr17g0554581 Helianthus annuus HOM05D002091 ORTHO05D002140 4.5e-09 65.1 90 50.0
Nn3g18204 Nelumbo nucifera HOM05D002091 ORTHO05D002140 4.5e-09 65.1 86 47.7
PGR042G3216 Punica granatum HOM05D002091 ORTHO05D002140 4.5e-09 65.1 89 49.4
SGA_v2.0_scaffold70G23497 Striga asiatica HOM05D002091 ORTHO05D002140 4.5e-09 65.1 89 50.6
Ca_01484_v3 Cicer arietinum L. HOM05D002091 ORTHO05D002140 5.9e-09 64.7 90 50.0
SGA_v2.0_scaffold34G13926 Striga asiatica HOM05D002091 ORTHO05D002140 5.9e-09 64.7 91 49.5
Nitab4.5_0001375g0170 Nicotiana tabacum HOM05D002091 ORTHO05D002140 7.7e-09 64.3 88 51.1
QL05p042066 Quercus lobata HOM05D002091 ORTHO05D002140 7.7e-09 64.3 90 46.7
Solyc02g077730.3 Solanum lycopersicum HOM05D002091 ORTHO05D002140 7.7e-09 64.3 89 51.7
Sopen02g022620 Solanum pennellii HOM05D002091 ORTHO05D002140 7.7e-09 64.3 89 51.7
PGSC0003DMG400031762 Solanum tuberosum HOM05D002091 ORTHO05D002140 7.7e-09 64.3 89 51.7
GSVIVG01021106001 Vitis vinifera HOM05D002091 ORTHO05D002140 7.7e-09 64.3 88 50.0
Medtr4g078770 Medicago truncatula HOM05D002091 ORTHO05D002140 1.0e-08 63.9 87 51.7
Cc05_g07650 Coffea canephora HOM05D002091 ORTHO05D002140 1.3e-08 63.5 102 46.1
Lsat_1_v5_gn_3_38841 Lactuca sativa HOM05D002091 ORTHO05D002140 1.3e-08 63.5 89 51.7
Oeu014776.1 Olea europaea HOM05D002091 ORTHO05D002140 1.3e-08 63.5 85 49.4
Potri.017G014500 Populus trichocarpa HOM05D002091 ORTHO05D002140 1.3e-08 63.5 87 50.6
RcHm_v2.0_Chr2g0127311 Rosa chinensis HOM05D002091 ORTHO05D002140 1.3e-08 63.5 90 48.9
Migut.H01474 Erythranthe guttata HOM05D002091 ORTHO05D002140 1.7e-08 63.2 90 50.0
Sc07g0007130 Simmondsia chinensis HOM05D002091 ORTHO05D002140 1.7e-08 63.2 88 53.4
Cc02_g13750 Coffea canephora HOM05D002091 ORTHO05D002140 2.2e-08 62.8 94 48.9
Medtr2g090650 Medicago truncatula HOM05D002091 ORTHO05D002140 2.2e-08 62.8 90 47.8
SGA_v2.0_scaffold22G09673 Striga asiatica HOM05D002091 ORTHO05D002140 2.2e-08 62.8 89 47.2
Nitab4.5_0008993g0040 Nicotiana tabacum HOM05D002091 ORTHO05D002140 2.9e-08 62.4 95 45.3
TWI59G1354 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.9e-08 62.4 91 52.7
vmacro15927 Vaccinium macrocarpon HOM05D002091 ORTHO05D002140 2.9e-08 62.4 89 48.3
CANSAT64G3013 Cannabis sativa HOM05D002091 ORTHO05D002140 3.8e-08 62.0 91 50.5
Ciclev10017075m.g Citrus clementina HOM05D002091 ORTHO05D002140 3.8e-08 62.0 92 46.7
Cc02_g13760 Coffea canephora HOM05D002091 ORTHO05D002140 3.8e-08 62.0 93 50.5
Migut.M01112 Erythranthe guttata HOM05D002091 ORTHO05D002140 3.8e-08 62.0 88 47.7
Lj3g0025541 Lotus japonicus HOM05D002091 ORTHO05D002140 3.8e-08 62.0 84 48.8
Phvul.006G182900 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 3.8e-08 62.0 90 45.6
Phvul.011G124500 Phaseolus vulgaris HOM05D002091 ORTHO05D002140 3.8e-08 62.0 84 50.0
AL1G42020 Arabidopsis lyrata HOM05D002091 ORTHO05D002140 5.0e-08 61.6 91 48.4
HanXRQChr01g0014411 Helianthus annuus HOM05D002091 ORTHO05D002140 5.0e-08 61.6 93 50.5
Rhsim02G0133900 Rhododendron simsii HOM05D002091 ORTHO05D002140 5.0e-08 61.6 85 49.4
VMungo0540G0400 Vigna mungo HOM05D002091 ORTHO05D002140 5.0e-08 61.6 95 43.2
VMungo1080G1707 Vigna mungo HOM05D002091 ORTHO05D002140 5.0e-08 61.6 84 48.8
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 6.5e-08 61.2 85 51.8
Atru.chr6.2877 Acer truncatum HOM05D002091 ORTHO05D002140 8.5e-08 60.8 90 47.8
arahy.Tifrunner.gnm1.ann1.G0WLQA Arachis hypogaea HOM05D002091 ORTHO05D002140 8.5e-08 60.8 91 45.1
Cfa000522 Carpinus fangiana HOM05D002091 ORTHO05D002140 8.5e-08 60.8 117 41.0
Sopen03g002320 Solanum pennellii HOM05D002091 ORTHO05D002140 8.5e-08 60.8 89 51.7
PGSC0003DMG400012829 Solanum tuberosum HOM05D002091 ORTHO05D002140 8.5e-08 60.8 89 51.7
Haze_06388 Corylus avellana HOM05D002091 ORTHO05D002140 1.1e-07 60.5 100 45.0
Duzib052G0085 Durio zibethinus HOM05D002091 ORTHO05D002140 1.1e-07 60.5 91 49.5
Nn1g09648 Nelumbo nucifera HOM05D002091 ORTHO05D002140 1.1e-07 60.5 89 48.3
arahy.Tifrunner.gnm1.ann1.2NH087 Arachis hypogaea HOM05D002091 ORTHO05D002140 1.4e-07 60.1 104 44.2
arahy.Tifrunner.gnm1.ann1.961YNL Arachis hypogaea HOM05D002091 ORTHO05D002140 1.4e-07 60.1 84 47.6
Lalb_Chr22g0356711 Lupinus albus HOM05D002091 ORTHO05D002140 1.4e-07 60.1 86 48.8
Potri.011G057300 Populus trichocarpa HOM05D002091 ORTHO05D002140 1.4e-07 60.1 93 49.5
RcHm_v2.0_Chr7g0223571 Rosa chinensis HOM05D002091 ORTHO05D002140 1.4e-07 60.1 90 46.7
SalBow7G3819 Salvia bowleyana HOM05D002091 ORTHO05D002140 1.4e-07 60.1 103 44.7
TWI59G0683 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 1.4e-07 60.1 87 50.6
Duzib132G0588 Durio zibethinus HOM05D002091 ORTHO05D002140 1.9e-07 59.7 87 47.1
Glyma.13G236300 Glycine max HOM05D002091 ORTHO05D002140 1.9e-07 59.7 88 45.5
Lalb_Chr24g0399981 Lupinus albus HOM05D002091 ORTHO05D002140 1.9e-07 59.7 91 47.3
AT1G28395 Arabidopsis thaliana HOM05D002091 ORTHO05D002140 2.5e-07 59.3 93 46.2
Lalb_Chr01g0005101 Lupinus albus HOM05D002091 ORTHO05D002140 2.5e-07 59.3 87 51.7
Manes.16G031200 Manihot esculenta HOM05D002091 ORTHO05D002140 2.5e-07 59.3 92 44.6
arahy.Tifrunner.gnm1.ann1.252E8Q Arachis hypogaea HOM05D002091 ORTHO05D002140 3.2e-07 58.9 91 44.0
Cc02_g13770 Coffea canephora HOM05D002091 ORTHO05D002140 3.2e-07 58.9 90 50.0
SalBow6G7240 Salvia bowleyana HOM05D002091 ORTHO05D002140 3.2e-07 58.9 100 44.0
SalBow8G0028 Salvia bowleyana HOM05D002091 ORTHO05D002140 3.2e-07 58.9 100 44.0
Ciclev10017238m.g Citrus clementina HOM05D002091 ORTHO05D002140 4.2e-07 58.5 93 47.3
ECA246G5121 Erigeron canadensis HOM05D002091 ORTHO05D002140 4.2e-07 58.5 87 51.7
TWI59G1014 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 4.2e-07 58.5 91 47.3
Carub.0001s2687 Capsella rubella HOM05D002091 ORTHO05D002140 5.5e-07 58.2 89 48.3
Cpa.g.sc83.86 Carica papaya HOM05D002091 ORTHO05D002140 5.5e-07 58.2 89 48.3
CsaV3_6G050360 Cucumis sativus L. HOM05D002091 ORTHO05D002140 5.5e-07 58.2 92 48.9
Thhalv10009195m.g Eutrema salsugineum HOM05D002091 ORTHO05D002140 5.5e-07 58.2 93 46.2
Prupe.4G051800 Prunus persica HOM05D002091 ORTHO05D002140 5.5e-07 58.2 88 47.7
Thecc.06G181700 Theobroma cacao HOM05D002091 ORTHO05D002140 5.5e-07 58.2 90 44.4
unitig_746.g26675 Utricularia gibba HOM05D002091 ORTHO05D002140 5.5e-07 58.2 92 45.7
Glyma.15G077400 Glycine max HOM05D002091 ORTHO05D002140 7.2e-07 57.8 88 43.2
Lj3g0015483 Lotus japonicus HOM05D002091 ORTHO05D002140 7.2e-07 57.8 86 46.5
MD10G1289900 Malus domestica HOM05D002091 ORTHO05D002140 7.2e-07 57.8 93 48.4
arahy.Tifrunner.gnm1.ann1.1N9QNC Arachis hypogaea HOM05D002091 ORTHO05D002140 9.4e-07 57.4 84 46.4
arahy.Tifrunner.gnm1.ann1.528IQ7 Arachis hypogaea HOM05D002091 ORTHO05D002140 9.4e-07 57.4 83 47.0
AUR62014863 Chenopodium quinoa HOM05D002091 ORTHO05D002140 9.4e-07 57.4 95 46.3
Glyma.06G289500 Glycine max HOM05D002091 ORTHO05D002140 9.4e-07 57.4 86 47.7
Peaxi162Scf00461g01118 Petunia axillaris HOM05D002091 ORTHO05D002140 9.4e-07 57.4 70 52.9
Peaxi162Scf00926g00514 Petunia axillaris HOM05D002091 ORTHO05D002140 9.4e-07 57.4 103 43.7
SalBow8G3934 Salvia bowleyana HOM05D002091 ORTHO05D002140 9.4e-07 57.4 100 43.0
CiPaw.09G063100 Carya illinoinensis HOM05D002091 ORTHO05D002140 1.2e-06 57.0 94 44.7
Potri.004G048100 Populus trichocarpa HOM05D002091 ORTHO05D002140 1.2e-06 57.0 90 46.7
Sabra17G0011700 Salix brachista HOM05D002091 ORTHO05D002140 1.2e-06 57.0 100 43.0
Sp1g24670 Schrenkiella parvula HOM05D002091 ORTHO05D002140 1.2e-06 57.0 89 47.2
Haze_13233 Corylus avellana HOM05D002091 ORTHO05D002140 1.6e-06 56.6 95 46.3
Duzib192G0619 Durio zibethinus HOM05D002091 ORTHO05D002140 1.6e-06 56.6 98 46.9
Glyma.12G117500 Glycine max HOM05D002091 ORTHO05D002140 1.6e-06 56.6 86 47.7
Lalb_Chr16g0383981 Lupinus albus HOM05D002091 ORTHO05D002140 1.6e-06 56.6 81 45.7
MELO3C032902.2 Cucumis melo HOM05D002091 ORTHO05D002140 2.1e-06 56.2 93 47.3
AUR62031069 Chenopodium quinoa HOM05D002091 ORTHO05D002140 2.7e-06 55.8 95 45.3
Haze_13234 Corylus avellana HOM05D002091 ORTHO05D002140 2.7e-06 55.8 86 47.7
Gorai.005G199700 Gossypium raimondii HOM05D002091 ORTHO05D002140 2.7e-06 55.8 89 44.9
MD05G1310800 Malus domestica HOM05D002091 ORTHO05D002140 2.7e-06 55.8 95 46.3
SGA_v2.0_scaffold100G29713 Striga asiatica HOM05D002091 ORTHO05D002140 2.7e-06 55.8 143 37.8
TWI23G0384 Tripterygium wilfordii HOM05D002091 ORTHO05D002140 2.7e-06 55.8 91 47.3
Manes.17G048800 Manihot esculenta HOM05D002091 ORTHO05D002140 3.6e-06 55.5 88 45.5
Nitab4.5_0005260g0020 Nicotiana tabacum HOM05D002091 ORTHO05D002140 3.6e-06 55.5 83 44.6
RcHm_v2.0_Chr7g0223421 Rosa chinensis HOM05D002091 ORTHO05D002140 3.6e-06 55.5 99 42.4
arahy.Tifrunner.gnm1.ann1.JHM90T Arachis hypogaea HOM05D002091 ORTHO05D002140 4.7e-06 55.1 89 49.4
A08p25610 Brassica napus HOM05D002091 ORTHO05D002140 4.7e-06 55.1 89 46.1
BraA08t34511Z Brassica rapa HOM05D002091 ORTHO05D002140 4.7e-06 55.1 89 46.1
Eucgr.D00599 Eucalyptus grandis HOM05D002091 ORTHO05D002140 4.7e-06 55.1 61 49.2
Sed0011525 Sechium edule HOM05D002091 ORTHO05D002140 4.7e-06 55.1 91 48.4
Sc17g0005970 Simmondsia chinensis HOM05D002091 ORTHO05D002140 4.7e-06 55.1 106 45.3
MSTRG.14328 Avicennia marina HOM05D002091 ORTHO05D002140 6.1e-06 54.7 85 44.7
C07p00400 Brassica napus HOM05D002091 ORTHO05D002140 6.1e-06 54.7 92 45.7
BolC7t40488H Brassica oleracea HOM05D002091 ORTHO05D002140 6.1e-06 54.7 92 45.7
CARHR027900 Cardamine hirsuta HOM05D002091 ORTHO05D002140 6.1e-06 54.7 93 44.1
Sed0010495 Sechium edule HOM05D002091 ORTHO05D002140 6.1e-06 54.7 90 47.8
arahy.Tifrunner.gnm1.ann1.DUMN8N Arachis hypogaea HOM05D002091 ORTHO05D002140 7.9e-06 54.3 89 49.4
BcaC01g00046 Brassica carinata HOM05D002091 ORTHO05D002140 7.9e-06 54.3 91 45.1
A05p11710 Brassica napus HOM05D002091 ORTHO05D002140 7.9e-06 54.3 88 45.5
BolC3t19767H Brassica oleracea HOM05D002091 ORTHO05D002140 7.9e-06 54.3 91 45.1
Gohir.D02G177900 Gossypium hirsutum HOM05D002091 ORTHO05D002140 7.9e-06 54.3 89 46.1
Oeu012150.1 Olea europaea HOM05D002091 ORTHO05D002140 7.9e-06 54.3 86 44.2


User provided reference genes

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