Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 0.0e+00 1149.0 578 100.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 0.0e+00 1136.7 578 98.6
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.0e-310 1067.8 608 88.3
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 3.4e-290 1001.1 607 83.5
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 1.3e-289 999.2 607 82.2
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 3.5e-274 948.0 604 77.6
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 2.9e-273 944.9 605 77.5
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 6.5e-273 943.7 608 77.3
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 2.1e-271 938.7 605 78.0
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 1.4e-270 936.0 604 77.3
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 8.8e-270 933.3 605 77.9
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 8.8e-270 933.3 605 77.7
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 9.7e-269 929.9 607 76.6
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 2.8e-268 928.3 610 76.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 1.1e-267 926.4 597 77.7
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 1.1e-267 926.4 606 75.7
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.8e-267 925.6 607 76.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 2.4e-267 925.2 606 76.1
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 2.4e-267 925.2 606 76.1
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 9.1e-267 923.3 608 76.3
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 5.9e-266 920.6 606 76.9
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 5.9e-266 920.6 610 75.7
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 7.7e-266 920.2 606 75.4
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 1.3e-265 919.5 606 75.9
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.1e-264 916.4 607 75.6
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 3.2e-264 914.8 605 76.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 3.2e-264 914.8 607 75.8
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 6.8e-262 907.1 610 74.8
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 7.5e-261 903.7 605 75.2
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.8e-260 901.7 605 74.2
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 6.3e-260 900.6 610 73.8
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 1.1e-259 899.8 612 73.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.4e-259 898.7 605 74.2
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 2.4e-259 898.7 605 74.2
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 9.1e-259 896.7 608 73.2
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.6e-258 896.0 612 72.9
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.6e-258 896.0 610 73.3
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.7e-258 895.2 612 72.7
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 7.7e-258 893.6 618 72.7
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.7e-257 892.5 599 73.6
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 5.0e-257 891.0 608 74.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 5.0e-257 891.0 610 73.8
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.5e-257 890.6 614 72.1
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 8.5e-257 890.2 612 72.5
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 9.4e-256 886.7 614 72.0
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 1.2e-255 886.3 614 72.0
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.2e-255 886.3 614 72.0
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.6e-255 885.9 613 72.4
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 1.6e-255 885.9 608 73.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.7e-255 884.4 612 71.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.0e-253 879.0 608 71.7
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.4e-253 878.2 605 72.2
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 4.9e-252 874.4 605 72.1
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 6.3e-252 874.0 605 71.9
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.4e-251 872.8 607 71.8
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.4e-251 872.8 607 71.7
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 1.8e-251 872.5 609 71.3
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.1e-251 871.7 605 71.9
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 3.1e-251 871.7 605 71.9
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 5.4e-251 870.9 604 72.0
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 7.0e-251 870.5 623 71.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 9.2e-251 870.2 612 71.9
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 1.6e-250 869.4 605 71.7
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 3.5e-250 868.2 605 71.4
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 7.7e-250 867.1 606 71.0
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 2.9e-249 865.1 613 71.3
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 6.6e-249 864.0 608 71.7
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.1e-248 863.2 610 71.1
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.5e-248 862.1 613 70.6
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 5.6e-248 860.9 599 72.1
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 5.6e-248 860.9 599 72.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.6e-247 859.4 608 71.2
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.6e-247 859.4 608 71.2
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.6e-247 859.4 608 71.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 2.8e-247 858.6 612 70.9
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.7e-247 857.8 614 70.0
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 4.7e-247 857.8 605 70.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.0e-246 856.7 612 71.4
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 5.2e-246 854.4 610 69.8
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 2.6e-245 852.0 603 71.0
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.4e-245 851.7 615 70.4
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 4.4e-245 851.3 599 71.6
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 5.7e-245 850.9 598 71.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 7.5e-245 850.5 600 70.0
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 7.5e-245 850.5 604 70.2
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.3e-244 849.7 598 71.1
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.7e-244 849.4 627 68.7
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.1e-243 846.7 608 69.7
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 9.2e-243 843.6 615 69.1
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 4.6e-242 841.3 608 69.9
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.1e-240 836.6 614 69.9
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 1.5e-240 836.3 616 68.0
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 4.3e-240 834.7 608 69.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 5.6e-240 834.3 620 67.6
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 8.0e-239 830.5 604 69.7
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 3.1e-238 828.6 608 68.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.2e-236 822.4 597 69.0
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.9e-236 822.0 614 68.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.9e-236 822.0 602 69.4
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 1.4e-235 819.7 578 72.3
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 7.0e-235 817.4 612 66.7
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 7.8e-234 813.9 616 66.7
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.2e-231 806.6 578 69.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 6.8e-230 800.8 609 67.3
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 6.4e-228 794.3 559 71.6
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 1.7e-225 786.2 545 72.3
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 3.0e-225 785.4 656 62.5
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 4.3e-224 781.6 618 65.9
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.8e-223 778.9 612 65.2
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.5e-221 773.1 619 64.5
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 3.4e-221 771.9 606 65.8
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 6.4e-220 767.7 619 64.0
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.1e-219 766.9 606 65.0
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 6.0e-218 761.1 880 49.4
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 6.2e-215 751.1 614 63.2
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.6e-213 745.7 626 61.7
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 4.3e-208 728.4 609 60.9
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 5.6e-208 728.0 605 62.1
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.4e-198 696.8 578 63.3
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.5e-197 691.8 476 72.3
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.8e-175 619.4 444 70.0
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.1e-174 617.5 610 54.8
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.6e-162 575.9 531 59.1
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 6.5e-156 555.1 615 47.6
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 1.4e-153 547.4 606 48.0
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 4.2e-147 525.8 613 48.1
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 4.4e-136 489.2 612 47.1
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 1.4e-129 467.6 627 43.2
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.8e-126 457.2 581 42.5
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 2.5e-91 340.5 209 78.9
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.2e-90 335.9 243 67.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.3e-83 313.5 322 48.4
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 4.5e-80 303.1 607 33.1
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.3e-63 248.4 199 64.3
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 5.0e-63 246.5 557 29.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 1.4e-60 238.4 243 51.4
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.2e-55 221.1 151 76.2
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 1.5e-51 208.4 148 70.9
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.5e-40 170.2 201 50.7
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 5.9e-32 143.3 604 22.8
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 7.7e-32 142.9 98 70.4
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 5.0e-23 113.6 79 69.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.5e-22 112.1 77 67.5
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 4.2e-22 110.5 79 68.4
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 8.3e-18 96.3 107 43.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 5.4e-17 93.6 224 33.5
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.0e-16 91.7 59 78.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 2.6e-11 74.7 100 41.0
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 1.1e-09 69.3 86 43.0


User provided reference genes

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