Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.9e-81 305.8 157 100.0
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.5e-65 252.3 191 74.3
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.1e-47 191.4 195 57.9
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 7.4e-46 187.6 133 82.0
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.8e-45 185.7 180 59.4
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 3.7e-45 185.3 169 62.1
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 4.8e-45 184.9 175 61.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-44 183.7 176 56.8
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.1e-44 183.7 154 63.6
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.4e-44 183.3 159 64.2
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.1e-44 182.2 172 58.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 3.1e-44 182.2 175 60.0
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.1e-44 181.8 175 58.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 5.3e-44 181.4 173 59.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.3e-44 181.4 174 60.3
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.9e-44 181.0 174 56.3
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.2e-43 180.3 145 66.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.5e-43 179.9 175 58.9
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.0e-43 179.5 173 60.1
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.6e-43 179.1 169 58.6
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.4e-43 178.7 177 58.2
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 4.5e-43 178.3 184 55.4
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 4.5e-43 178.3 184 55.4
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 5.9e-43 177.9 155 63.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 5.9e-43 177.9 180 57.8
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 7.7e-43 177.6 154 63.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.0e-42 177.2 152 63.2
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.2e-42 176.0 174 58.0
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.2e-42 176.0 180 56.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 2.9e-42 175.6 158 61.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.8e-42 175.3 178 56.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 3.8e-42 175.3 174 55.2
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 5.0e-42 174.9 145 64.1
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.0e-42 174.9 178 57.3
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.4e-41 173.3 154 62.3
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.4e-41 173.3 172 57.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.4e-41 173.3 178 56.7
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.4e-41 173.3 172 57.6
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 1.4e-41 173.3 174 56.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.5e-41 172.6 145 62.8
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.5e-41 172.6 175 54.3
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 3.2e-41 172.2 172 55.8
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 4.2e-41 171.8 174 56.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.5e-41 171.4 179 57.0
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 9.4e-41 170.6 179 53.1
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.2e-40 170.2 177 57.1
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.2e-40 170.2 174 57.5
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.6e-40 169.9 151 60.9
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 2.1e-40 169.5 166 57.2
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.1e-40 169.5 155 60.6
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.1e-40 169.5 150 61.3
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.7e-40 169.1 154 60.4
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.7e-40 169.1 153 61.4
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.7e-40 168.3 147 61.2
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 4.7e-40 168.3 149 59.7
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 7.9e-40 167.5 156 57.1
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.0e-39 167.2 182 53.8
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.0e-39 167.2 152 58.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.4e-39 166.8 154 61.7
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.4e-39 166.8 178 53.9
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.3e-39 166.0 177 53.1
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.3e-39 166.0 161 58.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 3.9e-39 165.2 137 64.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 5.2e-39 164.9 179 53.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.7e-39 164.5 178 53.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 8.8e-39 164.1 172 54.1
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.6e-38 162.5 178 53.4
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.3e-38 162.2 146 59.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 9.7e-38 160.6 179 50.3
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 9.7e-38 160.6 179 50.3
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.3e-37 160.2 148 58.1
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.7e-37 159.8 178 52.2
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.7e-37 159.8 173 53.8
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 3.7e-37 158.7 146 57.5
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 4.8e-37 158.3 179 50.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 4.8e-37 158.3 179 50.3
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 4.8e-37 158.3 143 58.0
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 4.8e-37 158.3 175 52.0
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 8.2e-37 157.5 145 57.2
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 1.1e-36 157.1 145 56.6
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-36 156.8 145 57.2
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.4e-36 156.8 145 57.2
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.8e-36 156.4 145 57.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 1.8e-36 156.4 146 56.8
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.8e-36 156.4 155 57.4
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.8e-36 156.4 140 57.9
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 2.4e-36 156.0 144 56.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.4e-36 156.0 144 57.6
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 3.1e-36 155.6 145 56.6
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 3.1e-36 155.6 172 50.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 7.0e-36 154.5 182 49.5
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 2.6e-35 152.5 139 59.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 3.5e-35 152.1 161 52.8
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 3.5e-35 152.1 139 59.0
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 3.5e-35 152.1 144 54.9
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 5.9e-35 151.4 191 48.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.3e-34 150.2 171 50.3
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.2e-34 149.4 139 56.8
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 2.2e-34 149.4 164 50.6
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.2e-34 149.4 171 48.0
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 2.9e-34 149.1 154 52.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 3.8e-34 148.7 238 43.3
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 2.5e-33 146.0 176 48.3
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 3.2e-33 145.6 157 53.5
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.2e-33 145.6 144 52.1
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 4.2e-33 145.2 116 64.7
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 7.2e-33 144.4 118 64.4
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.2e-32 143.7 147 55.8
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 8.0e-32 141.0 132 56.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.0e-31 139.0 137 53.3
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 6.7e-31 137.9 221 40.7
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-30 137.1 134 58.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 9.7e-30 134.0 117 59.0
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 9.7e-30 134.0 172 46.5
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 8.2e-29 131.0 118 55.1
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.0e-27 126.3 131 50.4
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.1e-25 120.6 124 55.6
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-25 120.2 131 53.4
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.5e-25 120.2 131 53.4
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.5e-25 119.4 117 53.0
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.5e-25 119.4 115 54.8
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-25 119.0 120 50.8
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.2e-24 117.1 156 41.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 3.6e-24 115.5 155 41.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.7e-24 115.2 148 41.2
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.7e-24 115.2 148 41.2
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.4e-23 113.6 115 58.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 9.8e-22 107.5 242 33.1
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.0e-20 101.3 136 44.9
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 1.7e-18 96.7 207 34.3
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.5e-17 93.6 95 51.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 3.0e-15 85.9 115 47.8
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-14 84.0 92 55.4
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 2.8e-13 79.3 167 35.3
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 4.1e-12 75.5 103 41.7
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 3.6e-08 62.4 46 67.4
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.4e-07 60.5 48 62.5
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.0e-07 58.9 36 77.8
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 6.8e-07 58.2 63 49.2
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-06 56.6 90 37.8
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 4.4e-06 55.5 63 49.2
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 5.8e-06 55.1 50 54.0


User provided reference genes

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