Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038765 Chenopodium quinoa HOM05D002597 ORTHO05D002830 2.7e-61 238.4 117 100.0
AUR62038766 Chenopodium quinoa HOM05D008156 ORTHO05D010348 1.5e-38 162.9 80 97.5
AUR62033778 Chenopodium quinoa HOM05D008156 ORTHO05D010348 2.7e-32 142.1 80 83.8
AUR62035929 Chenopodium quinoa HOM05D008156 ORTHO05D009940 1.3e-18 96.7 77 62.3
AUR62020437 Chenopodium quinoa HOM05D008156 ORTHO05D010348 3.5e-16 88.6 77 59.7
AUR62026424 Chenopodium quinoa HOM05D002597 ORTHO05D138472 1.8e-12 76.3 39 94.9
AUR62018369 Chenopodium quinoa HOM05D002597 ORTHO05D002830 1.4e-09 66.6 32 96.9
AUR62030293 Chenopodium quinoa HOM05D002597 ORTHO05D002830 5.4e-09 64.7 32 93.8
AUR62013937 Chenopodium quinoa HOM05D003546 ORTHO05D005667 1.2e-08 63.5 31 96.8
EL10Ac3g07260 Beta vulgaris HOM05D002597 ORTHO05D002830 2.1e-08 62.8 32 87.5
unitig_22.g5589 Utricularia gibba HOM05D002597 ORTHO05D002830 4.6e-08 61.6 33 87.9
Hma1.2p1_0096F.1_g047750 Hydrangea macrophylla HOM05D002597 ORTHO05D002830 1.7e-07 59.7 35 80.0
Rhsim09G0066000 Rhododendron simsii HOM05D002597 ORTHO05D002830 1.7e-07 59.7 35 74.3
SalBow2G3332 Salvia bowleyana HOM05D002597 ORTHO05D002830 1.7e-07 59.7 35 77.1
GSVIVG01011742001 Vitis vinifera HOM05D002597 ORTHO05D002830 2.3e-07 59.3 35 77.1
Cc11_g08510 Coffea canephora HOM05D002597 ORTHO05D002830 3.0e-07 58.9 35 77.1
Lalb_Chr05g0219571 Lupinus albus HOM05D002597 ORTHO05D002830 3.9e-07 58.5 35 77.1
Nitab4.5_0006582g0030 Nicotiana tabacum HOM05D002597 ORTHO05D002830 3.9e-07 58.5 35 77.1
Nitab4.5_0000496g0200 Nicotiana tabacum HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
Solyc07g008800.4 Solanum lycopersicum HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
Sopen05g034780 Solanum pennellii HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
Sopen07g004740 Solanum pennellii HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
PGSC0003DMG400028744 Solanum tuberosum HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
PGSC0003DMG402023448 Solanum tuberosum HOM05D002597 ORTHO05D002830 5.1e-07 58.2 35 77.1
Peaxi162Scf01070g00125 Petunia axillaris HOM05D000007 ORTHO05D000017 6.6e-07 57.8 35 77.1
Solyc05g056390.2 Solanum lycopersicum HOM05D002597 ORTHO05D002830 6.6e-07 57.8 32 84.4
CAN.G1156.35 Capsicum annuum HOM05D002597 ORTHO05D002830 8.6e-07 57.4 35 74.3
Gohir.D09G105500 Gossypium hirsutum HOM05D002597 ORTHO05D002830 8.6e-07 57.4 35 71.4
Gorai.006G122100 Gossypium raimondii HOM05D002597 ORTHO05D002830 8.6e-07 57.4 35 71.4
SGA_v2.0_scaffold257G45693 Striga asiatica HOM05D002597 ORTHO05D002830 8.6e-07 57.4 34 79.4
Thecc.09G254800 Theobroma cacao HOM05D002597 ORTHO05D002830 8.6e-07 57.4 35 71.4
CiPaw.06G046700 Carya illinoinensis HOM05D002597 ORTHO05D002830 1.5e-06 56.6 35 74.3
FAN07G0569 Fragaria x ananassa HOM05D002597 ORTHO05D002830 1.5e-06 56.6 32 81.2
FAN17G0885 Fragaria x ananassa HOM05D002597 ORTHO05D002830 1.5e-06 56.6 32 81.2
FAN22G1430 Fragaria x ananassa HOM05D002597 ORTHO05D002830 1.5e-06 56.6 32 81.2
MBI12_g40233_MAGBIO Magnolia biondii HOM05D002597 ORTHO05D002830 1.5e-06 56.6 35 71.4
RcHm_v2.0_Chr4g0441491 Rosa chinensis HOM05D002597 ORTHO05D002830 1.5e-06 56.6 32 81.2
Hund24563 Selenicereus undatus HOM05D002597 ORTHO05D002830 1.5e-06 56.6 32 84.4
BcaC05g26218 Brassica carinata HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 78.1
BolC5t30931H Brassica oleracea HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 78.1
Cfa008622 Carpinus fangiana HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 74.3
Ciclev10018326m.g Citrus clementina HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 74.3
DCAR_030228 Daucus carota HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 74.3
Dinv07659 Davidia involucrata HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 74.3
Lsat_1_v5_gn_8_44661 Lactuca sativa HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 71.4
MD13G1024100 Malus domestica HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 81.2
MD16G1026800 Malus domestica HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 81.2
PSO384G4833 Papaver somniferum HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 75.0
Peaxi162Scf00353g00216 Petunia axillaris HOM05D002597 ORTHO05D002830 1.9e-06 56.2 35 74.3
Prupe.1G326400 Prunus persica HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 81.2
Sc13g0001010 Simmondsia chinensis HOM05D002597 ORTHO05D002830 1.9e-06 56.2 32 78.1
C05p22310 Brassica napus HOM05D002597 ORTHO05D002830 2.5e-06 55.8 32 78.1
Carub.0001s2262 Capsella rubella HOM05D002597 ORTHO05D002830 2.5e-06 55.8 35 71.4
CDE05G3008 Ceratophyllum demersum HOM05D002597 ORTHO05D002830 2.5e-06 55.8 32 78.1
ECA246G1146 Erigeron canadensis HOM05D002597 ORTHO05D002830 2.5e-06 55.8 35 68.6
Gohir.A09G108200 Gossypium hirsutum HOM05D002597 ORTHO05D002830 2.5e-06 55.8 35 68.6
Nn3g18252 Nelumbo nucifera HOM05D002597 ORTHO05D002830 2.5e-06 55.8 32 81.2
ATR0307G010 Amborella trichopoda HOM05D002597 ORTHO05D002830 3.3e-06 55.5 32 75.0
AL1G36670 Arabidopsis lyrata HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 71.4
CSS0020141 Camellia sinensis var. sinensis HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 71.4
CSS0022101 Camellia sinensis var. sinensis HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 71.4
CARHR023480 Cardamine hirsuta HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 71.4
COL.COLO4_24932 Corchorus olitorius HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 68.6
ECA233G4104 Erigeron canadensis HOM05D002597 ORTHO05D002830 3.3e-06 55.5 32 78.1
HanXRQChr08g0212111 Helianthus annuus HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 71.4
Lalb_Chr09g0328571 Lupinus albus HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 74.3
Phvul.002G095400 Phaseolus vulgaris HOM05D002597 ORTHO05D002830 3.3e-06 55.5 35 74.3
vmacro00409 Vaccinium macrocarpon HOM05D002597 ORTHO05D002830 3.3e-06 55.5 28 85.7
HPP92_013909 Vanilla planifolia HOM05D002597 ORTHO05D002830 3.3e-06 55.5 32 78.1
BcaB02g06562 Brassica carinata HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
BcaB03g13078 Brassica carinata HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
BcaC05g25430 Brassica carinata HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
A08p31770 Brassica napus HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
C05p13050 Brassica napus HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
C08p16960 Brassica napus HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
BolC5t30049H Brassica oleracea HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
BolC8t49323H Brassica oleracea HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
BraA08t35099Z Brassica rapa HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
Cpa.g.sc7.91 Carica papaya HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 71.4
Ca_18742_v3 Cicer arietinum L. HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
Ca_29580_v3 Cicer arietinum L. HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
Haze_10985 Corylus avellana HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 71.4
FvH4_4g32620 Fragaria vesca HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
FAN12G2204 Fragaria x ananassa HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
Glyma.20G017200 Glycine max HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
Medtr3g110030 Medicago truncatula HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
PGR102G2737 Punica granatum HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 75.0
Sp1g13370 Schrenkiella parvula HOM05D002597 ORTHO05D002830 4.3e-06 55.1 35 74.3
Sp1g20540 Schrenkiella parvula HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 78.1
Sed0002018 Sechium edule HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 75.0
Sed0006882 Sechium edule HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 75.0
Sed0015647 Sechium edule HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 75.0
TWI75G0148 Tripterygium wilfordii HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 81.2
TAR623G1684 Trochodendron aralioides HOM05D002597 ORTHO05D002830 4.3e-06 55.1 32 68.8
Aa31LG4G10140 Aethionema arabicum HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 71.4
Ah.04g150840 Amaranthus hybridus HOM05D002597 ORTHO05D002830 5.6e-06 54.7 32 71.9
arahy.Tifrunner.gnm1.ann1.TJWA8Z Arachis hypogaea HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 68.6
A09p61670 Brassica napus HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 74.3
C08p45250 Brassica napus HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 74.3
BolC8t52073H Brassica oleracea HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 74.3
CAN.G193.18 Capsicum annuum HOM05D002597 ORTHO05D002830 5.6e-06 54.7 32 78.1
Lj4g0011340 Lotus japonicus HOM05D002597 ORTHO05D002830 5.6e-06 54.7 35 71.4
AT1G23100 Arabidopsis thaliana HOM05D002597 ORTHO05D002830 7.3e-06 54.3 35 68.6
Cpa.g.sc7.95 Carica papaya HOM05D002597 ORTHO05D002830 7.3e-06 54.3 35 74.3
CiPaw.10G042000 Carya illinoinensis HOM05D002597 ORTHO05D002830 7.3e-06 54.3 35 71.4
Migut.E00435 Erythranthe guttata HOM05D002597 ORTHO05D002830 7.3e-06 54.3 35 71.4
MBI13_g05977_MAGBIO Magnolia biondii HOM05D002597 ORTHO05D002830 7.3e-06 54.3 31 80.6
Os07g0641700 Oryza sativa ssp. japonica HOM05D002597 ORTHO05D002830 7.3e-06 54.3 32 81.2
QL07p011767 Quercus lobata HOM05D002597 ORTHO05D002830 7.3e-06 54.3 35 71.4
Sp5g26080 Schrenkiella parvula HOM05D002597 ORTHO05D002830 7.3e-06 54.3 32 78.1
AL1G27040 Arabidopsis lyrata HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
AT1G14980 Arabidopsis thaliana HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
A06p11000 Brassica napus HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
BraA06t24280Z Brassica rapa HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
CDE11G0944 Ceratophyllum demersum HOM05D002597 ORTHO05D002830 9.5e-06 53.9 32 78.1
ClCG01G006240 Citrullus lanatus HOM05D002597 ORTHO05D002830 9.5e-06 53.9 32 75.0
Thhalv10009183m.g Eutrema salsugineum HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
Thhalv10009186m.g Eutrema salsugineum HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 65.7
Glyma.07G219000 Glycine max HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 71.4
PSO339G1957 Papaver somniferum HOM05D002597 ORTHO05D002830 9.5e-06 53.9 32 71.9
Sed0028081 Sechium edule HOM05D002597 ORTHO05D002830 9.5e-06 53.9 35 68.6


User provided reference genes

Program Settings