Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038737 Chenopodium quinoa HOM05D007254 ORTHO05D009002 9.7e-144 513.5 259 100.0
AUR62020641 Chenopodium quinoa HOM05D007254 ORTHO05D009002 4.7e-90 335.1 280 65.4
Sc09g0007400 Simmondsia chinensis HOM05D007254 ORTHO05D009002 5.3e-73 278.5 346 47.7
Dinv13245 Davidia involucrata HOM05D007254 ORTHO05D009002 2.5e-70 269.6 318 48.4
Lsat_1_v5_gn_3_26521 Lactuca sativa HOM05D007254 ORTHO05D009002 3.0e-68 262.7 313 47.0
TAR636G2989 Trochodendron aralioides HOM05D007254 ORTHO05D009002 3.3e-67 259.2 329 44.7
HanXRQChr12g0384041 Helianthus annuus HOM05D007254 ORTHO05D009002 3.7e-66 255.8 336 44.6
CSS0032984 Camellia sinensis var. sinensis HOM05D007254 ORTHO05D009002 7.6e-64 248.1 326 46.6
PSO063G7066 Papaver somniferum HOM05D007254 ORTHO05D009002 6.0e-61 238.4 312 43.9
PSO170G3828 Papaver somniferum HOM05D007254 ORTHO05D009002 7.9e-61 238.0 312 44.2
Ciclev10010680m.g Citrus clementina HOM05D007254 ORTHO05D009002 6.7e-60 235.0 335 42.1
Sabra06G0216000 Salix brachista HOM05D007254 ORTHO05D009002 6.7e-60 235.0 330 43.9
vmacro21974 Vaccinium macrocarpon HOM05D007254 ORTHO05D009002 6.7e-60 235.0 320 45.0
FvH4_2g36410 Fragaria vesca HOM05D007254 ORTHO05D009002 5.7e-59 231.9 309 43.7
TWI34G0126 Tripterygium wilfordii HOM05D007254 ORTHO05D009002 1.6e-58 230.3 339 39.8
DCAR_004577 Daucus carota HOM05D007254 ORTHO05D009002 3.7e-58 229.2 341 42.5
Manes.11G154500 Manihot esculenta HOM05D007254 ORTHO05D009002 3.7e-58 229.2 335 42.7
Potri.006G278400 Populus trichocarpa HOM05D007254 ORTHO05D009002 4.8e-58 228.8 333 42.6
PGR044G2739 Punica granatum HOM05D007254 ORTHO05D009002 8.2e-58 228.0 325 44.0
Prupe.1G455400 Prunus persica HOM05D007254 ORTHO05D009002 1.1e-57 227.6 340 42.9
Atru.chr7.2684 Acer truncatum HOM05D007254 ORTHO05D009002 1.2e-56 224.2 334 41.3
Haze_21799 Corylus avellana HOM05D007254 ORTHO05D009002 1.2e-56 224.2 305 44.6
RcHm_v2.0_Chr6g0305491 Rosa chinensis HOM05D007254 ORTHO05D009002 2.0e-56 223.4 340 42.4
Cfa013312 Carpinus fangiana HOM05D007254 ORTHO05D009002 3.4e-56 222.6 305 43.3
Cpa.g.sc488.3 Carica papaya HOM05D007254 ORTHO05D009002 4.5e-56 222.2 310 41.0
AL2G41210 Arabidopsis lyrata HOM05D007254 ORTHO05D009002 5.9e-56 221.9 338 39.6
QL12p025906 Quercus lobata HOM05D007254 ORTHO05D009002 7.7e-56 221.5 305 42.3
PGSC0003DMG400014857 Solanum tuberosum HOM05D007254 ORTHO05D009002 1.3e-55 220.7 336 42.6
AT1G80290 Arabidopsis thaliana HOM05D007254 ORTHO05D009002 2.9e-55 219.5 313 40.9
Lj3g0004031 Lotus japonicus HOM05D007254 ORTHO05D009002 5.0e-55 218.8 333 42.0
Thecc.09G003000 Theobroma cacao HOM05D007254 ORTHO05D009002 5.0e-55 218.8 324 41.0
CiPaw.08G021500 Carya illinoinensis HOM05D007254 ORTHO05D009002 6.5e-55 218.4 305 42.3
FAN15G2622 Fragaria x ananassa HOM05D007254 ORTHO05D009002 6.5e-55 218.4 305 42.6
MELO3C003600.2 Cucumis melo HOM05D007254 ORTHO05D009002 8.5e-55 218.0 333 40.2
Sopen08g002050 Solanum pennellii HOM05D007254 ORTHO05D009002 8.5e-55 218.0 334 41.9
THA.LOC104812613 Tarenaya hassleriana HOM05D007254 ORTHO05D009002 8.5e-55 218.0 314 40.4
CANSAT25G1896 Cannabis sativa HOM05D007254 ORTHO05D009002 1.1e-54 217.6 316 43.0
ECA246G3277 Erigeron canadensis HOM05D007254 ORTHO05D009002 1.1e-54 217.6 280 44.3
Thhalv10000547m.g Eutrema salsugineum HOM05D007254 ORTHO05D009002 1.4e-54 217.2 303 40.9
Solyc08g006080.1 Solanum lycopersicum HOM05D007254 ORTHO05D009002 1.4e-54 217.2 334 41.9
Gorai.008G132700 Gossypium raimondii HOM05D007254 ORTHO05D009002 1.9e-54 216.9 333 41.1
Eucgr.C04240 Eucalyptus grandis HOM05D007254 ORTHO05D009002 2.5e-54 216.5 304 42.8
A02p23670 Brassica napus HOM05D007254 ORTHO05D009002 3.2e-54 216.1 326 40.2
BolC2t09755H Brassica oleracea HOM05D007254 ORTHO05D009002 3.2e-54 216.1 325 39.7
Gohir.D12G121900 Gossypium hirsutum HOM05D007254 ORTHO05D009002 3.2e-54 216.1 333 40.8
MD15G1102400 Malus domestica HOM05D007254 ORTHO05D009002 3.2e-54 216.1 319 42.0
Aqoxy7G02676 Aquilegia oxysepala HOM05D007254 ORTHO05D009002 4.2e-54 215.7 344 41.0
CsaV3_3G047290 Cucumis sativus L. HOM05D007254 ORTHO05D009002 4.2e-54 215.7 333 40.2
BcaC03g15986 Brassica carinata HOM05D007254 ORTHO05D009002 5.5e-54 215.3 326 39.6
C02p37430 Brassica napus HOM05D007254 ORTHO05D009002 5.5e-54 215.3 326 39.6
CARHR074200 Cardamine hirsuta HOM05D007254 ORTHO05D009002 7.2e-54 214.9 329 39.5
BcaB05g25281 Brassica carinata HOM05D007254 ORTHO05D009002 9.4e-54 214.5 330 39.1
Sed0008272 Sechium edule HOM05D007254 ORTHO05D009002 9.4e-54 214.5 305 40.0
Sp5g35520 Schrenkiella parvula HOM05D007254 ORTHO05D009002 2.1e-53 213.4 313 40.3
ClCG05G026310 Citrullus lanatus HOM05D007254 ORTHO05D009002 3.6e-53 212.6 333 39.3
Gohir.A12G118100 Gossypium hirsutum HOM05D007254 ORTHO05D009002 4.6e-53 212.2 333 40.5
Aa31LG4G570 Aethionema arabicum HOM05D007254 ORTHO05D009002 1.0e-52 211.1 336 37.5
Duzib150G0445 Durio zibethinus HOM05D007254 ORTHO05D009002 1.0e-52 211.1 321 39.6
BraA02t07360Z Brassica rapa HOM05D007254 ORTHO05D009002 1.8e-52 210.3 335 39.7
Lalb_Chr22g0361141 Lupinus albus HOM05D007254 ORTHO05D009002 2.2e-50 203.4 312 38.8
Phvul.002G252600 Phaseolus vulgaris HOM05D007254 ORTHO05D009002 2.2e-50 203.4 313 41.5
Migut.A00450 Erythranthe guttata HOM05D007254 ORTHO05D009002 2.8e-50 203.0 339 39.8
Glyma.15G027100 Glycine max HOM05D007254 ORTHO05D009002 1.4e-49 200.7 306 39.9
ATR0626G074 Amborella trichopoda HOM05D007254 ORTHO05D009002 4.1e-49 199.1 338 38.2
Nitab4.5_0004859g0100 Nicotiana tabacum HOM05D007254 ORTHO05D009002 4.1e-49 199.1 279 43.0
MBI16_g18202_MAGBIO Magnolia biondii HOM05D007254 ORTHO05D009002 5.3e-49 198.7 310 38.4
MSTRG.25770 Avicennia marina HOM05D007254 ORTHO05D009002 9.1e-49 198.0 343 39.1
Ca_12841_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 1.5e-48 197.2 304 40.8
arahy.Tifrunner.gnm1.ann1.CY5H5G Arachis hypogaea HOM05D007254 ORTHO05D009002 2.0e-48 196.8 308 38.3
FAN27G2933 Fragaria x ananassa HOM05D007254 ORTHO05D009002 3.4e-48 196.1 286 41.6
arahy.Tifrunner.gnm1.ann1.2B8833 Arachis hypogaea HOM05D007254 ORTHO05D009002 4.5e-48 195.7 308 38.3
Medtr1g009180 Medicago truncatula HOM05D007254 ORTHO05D009002 2.2e-47 193.4 298 40.3
Ca_12843_v3 Cicer arietinum L. HOM05D007254 ORTHO05D009002 2.9e-47 193.0 304 40.1
VMungo0251G2754 Vigna mungo HOM05D007254 ORTHO05D009002 8.5e-47 191.4 290 42.4
FAN20G0412 Fragaria x ananassa HOM05D007254 ORTHO05D009002 7.2e-46 188.3 282 41.1
MD08G1123400 Malus domestica HOM05D007254 ORTHO05D009002 5.7e-43 178.7 339 38.3
Carub.0003s3026 Capsella rubella HOM05D007254 ORTHO05D009002 2.4e-41 173.3 304 35.5
SEGI_23529 Sequoiadendron giganteum HOM05D007254 ORTHO05D009002 5.3e-41 172.2 302 37.1
Mapoly0026s0119 Marchantia polymorpha HOM05D007254 ORTHO05D009002 5.9e-40 168.7 303 35.3
Pp3c16_2260 Physcomitrium patens HOM05D007254 ORTHO05D009002 3.2e-38 162.9 321 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1205 Anthoceros agrestis HOM05D007254 ORTHO05D009002 7.2e-38 161.8 328 32.9
SMO259G0048 Selaginella moellendorffii HOM05D007254 ORTHO05D009002 1.6e-37 160.6 330 34.8
unitig_32.g10941 Utricularia gibba HOM05D007254 ORTHO05D009002 8.8e-36 154.8 317 33.4
Cc10_g10060 Coffea canephora HOM05D007254 ORTHO05D009002 1.5e-35 154.1 233 42.5
Zm00001eb174600 Zea mays HOM05D007254 ORTHO05D009002 6.3e-34 148.7 345 34.8
CBR_g69680 Chara braunii HOM05D007254 ORTHO05D009002 9.1e-33 144.8 302 31.1
Oeu008784.1 Olea europaea HOM05D007254 ORTHO05D009002 2.2e-26 123.6 258 35.3
Psat6g034520 Pisum sativum HOM05D007254 ORTHO05D009002 8.3e-26 121.7 236 35.6
CDE06G0391 Ceratophyllum demersum HOM05D007254 ORTHO05D009002 1.1e-25 121.3 212 36.3
CBR_g3936 Chara braunii HOM05D007254 ORTHO05D009002 1.1e-25 121.3 305 29.2
TPR.G12004 Trifolium pratense HOM05D002718 ORTHO05D003269 4.5e-24 115.9 121 47.9
TPR.G27365 Trifolium pratense HOM05D007254 ORTHO05D009002 8.5e-23 111.7 90 64.4
CBR_g23106 Chara braunii HOM05D007254 ORTHO05D009002 3.2e-22 109.8 303 26.4
CBR_g48623 Chara braunii HOM05D007254 ORTHO05D009002 2.7e-21 106.7 303 27.1
CBR_g6431 Chara braunii HOM05D007254 ORTHO05D009002 3.0e-20 103.2 127 44.9
CAN.G940.5 Capsicum annuum HOM05D007254 ORTHO05D009002 5.2e-20 102.4 92 58.7
CBR_g12499 Chara braunii HOM05D003699 ORTHO05D009002 5.2e-20 102.4 127 44.1
CBR_g12500 Chara braunii HOM05D003699 ORTHO05D009002 5.2e-20 102.4 127 42.5
CBR_g6484 Chara braunii HOM05D007254 ORTHO05D009002 2.1e-13 80.5 138 37.7
CBR_g34408 Chara braunii HOM05D007254 ORTHO05D009002 6.1e-13 79.0 133 36.1
CBR_g56623 Chara braunii HOM05D007254 ORTHO05D009002 1.8e-12 77.4 298 26.2
Nitab4.5_0000860g0200 Nicotiana tabacum HOM05D007254 ORTHO05D009002 2.0e-11 73.9 56 64.3
BolC2t10127H Brassica oleracea HOM05D000647 ORTHO05D000174 4.4e-11 72.8 50 60.0
C02p41140 Brassica napus HOM05D000647 ORTHO05D000174 1.3e-10 71.2 50 60.0
C04p37620 Brassica napus HOM05D007254 ORTHO05D009002 1.8e-09 67.4 61 52.5
HPP92_018330 Vanilla planifolia HOM05D007254 ORTHO05D009002 5.4e-09 65.9 131 35.1
unitig_748.g8172 Utricularia gibba HOM05D007254 ORTHO05D009002 2.9e-07 60.1 73 46.6
Hma1.2p1_0488F.1_g163830 Hydrangea macrophylla HOM05D003699 ORTHO05D004474 6.6e-07 58.9 138 35.5
Manes.10G016400 Manihot esculenta HOM05D003699 ORTHO05D004474 1.5e-06 57.8 121 32.2
SMO367G0291 Selaginella moellendorffii HOM05D004158 ORTHO05D004884 1.5e-06 57.8 120 33.3
Oeu017569.2 Olea europaea HOM05D003699 ORTHO05D004474 2.5e-06 57.0 116 31.9
SalBow6G6612 Salvia bowleyana HOM05D004158 ORTHO05D004884 2.5e-06 57.0 135 33.3
Nn1g01150 Nelumbo nucifera HOM05D003699 ORTHO05D004474 4.3e-06 56.2 135 33.3
SalBow6G1828 Salvia bowleyana HOM05D003699 ORTHO05D004474 4.3e-06 56.2 123 30.9
unitig_62.g23932 Utricularia gibba HOM05D003699 ORTHO05D004474 4.3e-06 56.2 129 31.0
AagrBONN_evm.TU.Sc2ySwM_368.1503 Anthoceros agrestis HOM05D004158 ORTHO05D004884 5.6e-06 55.8 122 32.0
COL.COLO4_25638 Corchorus olitorius HOM05D003699 ORTHO05D004474 5.6e-06 55.8 121 32.2
MBI14_g09435_MAGBIO Magnolia biondii HOM05D003699 ORTHO05D004474 5.6e-06 55.8 112 33.0
MD07G1215500 Malus domestica HOM05D003699 ORTHO05D004474 5.6e-06 55.8 123 29.3
Manes.07G126700 Manihot esculenta HOM05D003699 ORTHO05D004474 5.6e-06 55.8 121 31.4
Prupe.2G285700 Prunus persica HOM05D003699 ORTHO05D004474 5.6e-06 55.8 124 31.5
Thecc.10G023400 Theobroma cacao HOM05D003699 ORTHO05D004474 5.6e-06 55.8 121 33.1
CANSAT21G1948 Cannabis sativa HOM05D003699 ORTHO05D004474 7.3e-06 55.5 112 33.9
Os06g0705000 Oryza sativa ssp. japonica HOM05D003699 ORTHO05D004474 9.5e-06 55.1 108 36.1
TAR375G0673 Trochodendron aralioides HOM05D003699 ORTHO05D004474 9.5e-06 55.1 112 34.8


User provided reference genes

Program Settings