Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 3353.1 1739 100.0
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 3048.1 1740 91.9
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2567.0 1767 77.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2532.3 1743 75.8
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2236.1 1722 67.1
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2234.1 1751 68.0
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2223.7 1759 65.4
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2211.0 1723 66.2
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2209.5 1703 68.9
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2204.5 1734 65.9
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2200.6 1709 66.2
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2198.7 1707 66.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2191.4 1731 65.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1720 65.9
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1762 64.8
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2173.7 1761 64.6
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2169.4 1747 64.1
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1751 63.8
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2163.7 1715 65.3
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2163.7 1758 63.9
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2160.2 1726 65.8
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2149.0 1761 63.7
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2147.9 1661 66.3
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2146.7 1705 64.6
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2140.5 1709 64.1
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2138.2 1761 63.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2137.5 1752 63.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2131.3 1722 64.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2129.8 1761 63.3
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2128.6 1719 64.2
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2125.1 1689 64.9
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2113.6 1741 62.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2110.9 1764 63.0
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2110.9 1751 63.7
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2105.5 1760 62.8
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2098.2 1721 63.7
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2098.2 1751 63.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2098.2 1693 64.4
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2097.4 1736 62.9
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2096.2 1764 62.1
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2095.1 1725 63.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2094.7 1753 63.4
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2093.2 1723 63.3
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2089.3 1704 64.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2087.8 1708 63.2
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2084.3 1745 62.3
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2083.9 1694 63.0
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2079.7 1712 63.3
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2078.9 1671 64.6
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2077.4 1714 63.0
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2069.7 1733 62.4
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2065.8 1726 62.8
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2062.3 1683 63.0
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2060.8 1742 62.3
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2060.0 1721 62.5
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2058.9 1709 63.5
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2051.9 1697 63.8
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2048.5 1710 62.9
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2043.1 1704 63.4
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2036.9 1745 60.2
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2035.0 1715 62.7
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2028.8 1717 63.0
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2028.4 1713 63.1
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2027.3 1795 60.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2022.7 1728 61.9
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2020.7 1752 61.4
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2018.0 1718 61.8
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2018.0 1732 61.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2016.1 1721 62.5
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2013.8 1716 60.5
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2011.5 1819 60.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2009.2 1734 61.4
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2007.6 1727 61.6
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2003.0 1721 61.9
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 1986.1 1433 68.7
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1983.0 1889 58.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1973.0 1797 59.4
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1955.3 1802 58.7
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1952.9 1658 60.7
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1900.9 1608 62.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1877.4 2118 50.3
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1874.4 1732 56.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1855.5 1311 68.0
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1830.5 1315 66.9
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1830.1 1736 56.0
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1794.2 1621 58.1
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1765.7 1730 56.1
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1759.6 1477 62.2
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1734.2 1747 53.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1711.8 1178 68.9
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1672.5 1830 53.1
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1601.3 1654 52.0
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1588.9 1712 49.1
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1580.1 1714 50.4
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1560.8 1714 49.9
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1558.9 1476 57.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1527.7 1654 49.8
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1523.1 1771 51.4
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1497.3 1064 67.9
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1387.9 954 69.2
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1387.5 1103 60.7
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1299.3 1104 63.2
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1245.3 1332 52.7
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1228.8 1107 61.9
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1178.7 761 77.7
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1170.2 1164 56.8
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.6e-309 1064.7 918 64.2
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 2.6e-293 1013.1 928 55.0
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.4e-264 916.0 635 70.1
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 3.4e-248 863.2 619 67.0
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 9.8e-248 861.7 701 58.1
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.3e-239 832.0 816 59.4
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.9e-227 794.3 571 68.3
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.3e-202 711.8 1549 32.9
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 4.6e-197 693.3 845 41.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.8e-170 604.4 449 65.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 5.7e-147 526.9 376 67.6
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.9e-143 514.6 329 74.5
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 5.6e-134 483.8 566 56.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 1.2e-115 422.9 907 31.3
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.6e-109 401.4 697 35.3
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.2e-105 388.3 600 49.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.8e-101 375.2 444 45.0
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 6.8e-100 370.5 242 73.1
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 3.0e-95 355.1 336 56.8
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 2.4e-92 345.5 488 52.3
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.4e-89 334.3 216 71.3
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 2.1e-85 322.4 244 61.1
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.3e-74 286.6 189 73.0
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.7e-66 259.6 176 64.8
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.5e-65 255.8 367 49.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 6.9e-60 237.7 152 73.7
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 5.9e-59 234.6 195 59.0
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 2.6e-46 192.6 200 43.5
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.2e-42 179.5 115 73.0
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 5.2e-39 168.3 407 40.3
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 8.8e-39 167.5 98 81.6
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 5.7e-38 164.9 134 58.2
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.2e-35 157.1 128 54.7
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.7e-29 136.7 168 43.5
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.4e-28 132.9 205 41.5
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.2e-27 130.6 123 50.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 6.1e-24 118.2 88 59.1
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.0e-22 113.2 73 74.0
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 7.5e-22 111.3 95 60.0
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 3.1e-20 105.9 91 56.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 7.0e-20 104.8 238 41.6
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.0e-19 103.2 61 73.8
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.7e-19 102.8 263 38.4
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.5e-19 102.4 216 35.2
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 7.7e-19 101.3 98 50.0
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.7e-18 100.1 75 68.0
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 7.3e-17 94.7 305 33.1
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.7e-16 92.0 63 76.2
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.0e-14 86.7 57 70.2
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 4.9e-13 82.0 98 40.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 8.3e-13 81.3 95 49.5
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 1.4e-12 80.5 49 67.3
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 5.4e-12 78.6 45 73.3
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.7e-11 76.3 50 72.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.3e-10 73.2 52 65.4
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.9e-10 72.4 65 50.8
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 3.3e-09 69.3 54 57.4
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 5.6e-09 68.6 40 75.0
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 2.1e-08 66.6 61 57.4
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.4e-07 63.9 95 37.9
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 3.1e-07 62.8 35 80.0
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 6.8e-07 61.6 260 30.8
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 1.2e-06 60.8 42 61.9
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 1.5e-06 60.5 165 28.5
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 9.8e-06 57.8 44 63.6


User provided reference genes

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