Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.5e-265 918.3 487 100.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 6.5e-258 893.6 487 97.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.6e-209 731.1 489 80.2
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 4.3e-201 704.9 488 78.1
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 2.4e-199 699.1 462 81.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.3e-176 623.6 492 67.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.8e-170 603.2 490 65.7
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 5.3e-167 591.7 495 64.0
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 6.9e-167 591.3 495 65.9
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.5e-166 590.1 461 66.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 3.4e-166 589.0 489 64.6
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.0e-165 587.4 489 65.4
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.2e-165 586.3 489 64.2
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 6.5e-165 584.7 489 64.0
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 8.5e-165 584.3 489 64.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 4.6e-163 578.6 488 65.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.3e-162 577.0 490 62.7
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 8.7e-162 574.3 492 63.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.5e-161 573.5 461 65.5
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.5e-161 572.8 490 62.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.4e-161 571.2 505 60.8
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.6e-160 570.1 490 62.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 4.8e-160 568.5 490 62.9
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 8.2e-160 567.8 492 61.0
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.0e-158 563.1 498 61.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.6e-158 562.8 492 60.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.5e-158 562.0 487 60.6
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.3e-157 560.5 489 62.0
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.3e-157 560.5 489 61.1
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 8.5e-157 557.8 490 60.4
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.9e-156 556.6 492 60.6
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.9e-156 556.6 490 59.8
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 6.1e-155 551.6 501 61.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.0e-154 550.8 502 60.0
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.3e-154 549.7 501 61.3
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 5.7e-153 545.0 502 59.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 5.7e-153 545.0 491 59.7
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 9.7e-153 544.3 489 62.4
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.7e-152 543.5 493 60.6
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 8.2e-152 541.2 492 59.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 5.9e-150 535.0 460 63.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 7.7e-150 534.6 497 58.8
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-149 533.9 494 59.3
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 2.2e-149 533.1 490 59.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.9e-149 532.7 511 58.7
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 3.8e-149 532.3 493 59.8
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.4e-148 530.4 418 65.8
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.9e-148 530.0 490 60.6
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 5.2e-146 521.9 491 58.2
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.7e-146 521.5 493 57.2
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.5e-145 520.4 492 58.7
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.4e-145 518.1 481 56.5
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.4e-143 513.8 488 57.0
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.4e-143 513.8 489 58.3
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.8e-143 513.5 497 57.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.2e-142 510.8 491 57.0
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.6e-142 510.4 488 57.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 2.0e-142 510.0 488 58.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 2.0e-142 510.0 447 62.0
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.9e-142 508.4 494 55.7
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.7e-141 506.9 490 57.1
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.0e-141 505.4 426 65.5
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.0e-141 505.4 475 56.4
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.1e-140 504.2 489 57.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-140 503.8 489 55.4
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.5e-140 503.8 497 57.1
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.5e-140 503.8 506 55.7
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.5e-140 501.9 491 56.0
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.7e-139 499.6 544 53.5
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 2.7e-139 499.6 489 55.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 8.0e-139 498.0 490 55.3
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 8.0e-139 498.0 488 57.4
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-138 497.3 512 53.1
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 2.3e-138 496.5 489 55.2
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.0e-138 495.7 520 52.9
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 4.0e-138 495.7 489 55.8
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 4.0e-138 495.7 408 64.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 6.7e-138 495.0 489 56.0
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.2e-137 494.2 490 55.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 1.2e-137 494.2 488 55.3
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-136 490.0 467 55.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 3.7e-136 489.2 489 53.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 6.3e-136 488.4 480 56.9
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-135 486.9 507 55.8
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 4.1e-135 485.7 497 56.1
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.7e-134 483.0 462 57.6
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.5e-132 477.2 492 54.3
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 7.2e-132 474.9 510 53.3
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 7.2e-132 474.9 488 55.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 7.2e-132 474.9 492 55.1
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.1e-131 473.4 495 53.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.3e-130 469.9 459 56.2
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 8.8e-130 468.0 490 52.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 8.8e-130 468.0 484 53.3
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 3.4e-129 466.1 493 54.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.3e-128 464.2 520 52.3
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.3e-128 464.2 490 53.3
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.7e-128 463.8 453 57.8
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.2e-128 463.4 588 47.1
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-127 459.1 489 53.4
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.0e-127 458.4 488 52.9
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.2e-126 457.6 490 53.9
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 2.0e-126 456.8 489 53.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.0e-126 456.8 489 53.0
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 3.5e-126 456.1 425 56.9
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.0e-125 454.5 489 52.6
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.9e-124 450.3 489 51.9
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 2.5e-124 449.9 490 52.7
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 5.5e-124 448.7 491 52.1
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.8e-122 443.7 459 53.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 8.8e-122 441.4 489 52.1
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.0e-121 440.3 448 54.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-121 439.5 489 52.8
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.7e-120 437.2 491 51.5
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 3.7e-120 436.0 497 52.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 3.1e-119 433.0 491 51.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 7.8e-118 428.3 488 51.4
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-117 427.2 491 50.3
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.3e-117 426.8 404 54.5
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 6.6e-117 425.2 488 51.8
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 9.5e-116 421.4 478 52.5
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 3.6e-115 419.5 489 50.5
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-114 416.8 537 46.7
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-114 416.4 537 46.7
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 5.2e-114 415.6 498 50.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.2e-113 414.5 463 52.5
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 7.5e-113 411.8 388 55.7
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 8.0e-107 391.7 453 49.4
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.8e-106 390.6 490 48.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.4e-103 380.9 345 62.6
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.2e-103 378.3 451 51.4
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.7e-101 374.0 488 46.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 5.2e-98 362.5 392 53.8
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 7.1e-95 352.1 482 47.1
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.6e-94 350.9 495 47.3
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.1e-90 336.7 409 48.4
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 6.8e-90 335.5 216 74.5
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 7.6e-89 332.0 412 48.8
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 1.7e-88 330.9 446 45.3
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.4e-87 327.8 216 71.3
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 3.2e-87 326.6 371 48.0
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 4.6e-86 322.8 449 40.8
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.5e-81 307.8 357 46.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.6e-78 297.7 222 63.1
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.1e-77 292.7 347 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 2.1e-75 287.3 291 48.5
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.2e-62 245.0 180 65.0
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 5.9e-49 199.5 320 46.2
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.5e-47 194.1 156 62.2
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.9e-44 184.5 135 60.7
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 3.7e-43 180.3 239 49.4
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 8.5e-40 169.1 267 35.6
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 5.1e-37 159.8 272 42.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.5e-33 148.3 244 32.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 9.4e-31 139.0 95 66.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 3.6e-30 137.1 190 35.8
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 3.8e-24 117.1 112 59.8
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 5.0e-24 116.7 230 39.1
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.1e-23 115.5 76 68.4
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.2e-19 99.4 73 57.5
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.0e-18 96.3 117 52.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.8e-16 90.5 96 55.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 2.2e-11 74.7 56 55.4
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.5e-08 63.2 42 61.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 8.6e-08 62.8 77 46.8
FvH4_4g16331 Fragaria vesca HOM05D004208 ORTHO05D197324 1.9e-07 61.6 72 48.6
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 7.2e-07 59.7 45 62.2


User provided reference genes

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