Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 7.9e-215 750.4 431 100.0
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 2.0e-56 224.2 113 98.2
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 2.2e-52 210.7 113 89.4
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 2.9e-52 210.3 113 90.3
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 3.8e-52 209.9 113 90.3
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 3.8e-52 209.9 113 90.3
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 6.5e-52 209.1 113 93.8
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 6.5e-52 209.1 113 88.5
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 6.5e-52 209.1 113 88.5
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.1e-51 208.4 113 89.4
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.5e-51 208.0 113 89.4
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 1.9e-51 207.6 113 88.5
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 2.5e-51 207.2 113 88.5
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 2.5e-51 207.2 113 88.5
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 2.5e-51 207.2 113 89.4
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 2.5e-51 207.2 113 90.3
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.5e-51 207.2 112 89.3
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 4.2e-51 206.5 112 89.3
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 4.2e-51 206.5 113 88.5
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 5.5e-51 206.1 116 85.3
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 7.2e-51 205.7 112 88.4
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 7.2e-51 205.7 113 89.4
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 7.2e-51 205.7 112 88.4
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 9.4e-51 205.3 113 87.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 9.4e-51 205.3 113 87.6
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 9.4e-51 205.3 113 87.6
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 1.6e-50 204.5 113 88.5
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 2.1e-50 204.1 113 87.6
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.1e-50 204.1 113 87.6
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 2.1e-50 204.1 113 86.7
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 2.7e-50 203.8 113 88.5
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 2.7e-50 203.8 113 87.6
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 2.7e-50 203.8 113 87.6
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 2.7e-50 203.8 113 87.6
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 2.7e-50 203.8 115 87.8
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 3.6e-50 203.4 113 89.4
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 3.6e-50 203.4 113 88.5
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 4.7e-50 203.0 112 87.5
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 4.7e-50 203.0 113 88.5
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.7e-50 203.0 112 88.4
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 4.7e-50 203.0 113 88.5
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 6.1e-50 202.6 113 88.5
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 6.1e-50 202.6 113 86.7
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 6.1e-50 202.6 113 87.6
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 1.0e-49 201.8 112 86.6
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 1.4e-49 201.4 112 87.5
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 1.8e-49 201.1 113 86.7
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.8e-49 201.1 113 86.7
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 2.3e-49 200.7 112 87.5
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 3.0e-49 200.3 113 85.8
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 3.0e-49 200.3 113 85.8
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.0e-49 199.9 115 86.1
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 4.0e-49 199.9 113 85.8
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 5.2e-49 199.5 113 86.7
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 6.8e-49 199.1 112 85.7
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 6.8e-49 199.1 112 85.7
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 6.8e-49 199.1 113 86.7
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 6.8e-49 199.1 113 85.0
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 8.8e-49 198.7 112 84.8
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 8.8e-49 198.7 113 86.7
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 1.2e-48 198.4 113 85.0
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 1.2e-48 198.4 113 85.0
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.2e-48 198.4 113 85.0
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 1.2e-48 198.4 112 86.6
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 2.0e-48 197.6 113 85.0
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.0e-48 197.6 113 85.0
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 2.0e-48 197.6 113 85.0
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.6e-48 197.2 112 84.8
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 2.6e-48 197.2 113 82.3
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 2.6e-48 197.2 113 82.3
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 3.4e-48 196.8 113 85.0
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 4.4e-48 196.4 112 83.9
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 4.4e-48 196.4 113 84.1
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 9.8e-48 195.3 112 84.8
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 9.8e-48 195.3 112 84.8
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 9.8e-48 195.3 113 84.1
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.3e-47 194.9 113 84.1
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.7e-47 194.5 112 84.8
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.7e-47 194.5 112 83.9
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 4.9e-47 193.0 113 82.3
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 4.9e-47 193.0 112 83.0
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 8.3e-47 192.2 99 97.0
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 8.3e-47 192.2 113 82.3
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.1e-46 191.8 112 83.0
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 1.4e-46 191.4 108 86.1
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.4e-46 191.4 108 86.1
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.4e-46 191.4 113 82.3
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 1.4e-46 191.4 112 82.1
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 3.1e-46 190.3 107 84.1
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 4.1e-46 189.9 112 82.1
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 5.4e-46 189.5 112 82.1
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 5.4e-46 189.5 112 82.1
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 9.1e-46 188.7 113 81.4
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 1.6e-45 188.0 112 81.2
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 1.6e-45 188.0 112 81.2
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 1.6e-45 188.0 99 93.9
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 1.6e-45 188.0 112 81.2
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 2.0e-45 187.6 132 72.7
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 2.0e-45 187.6 112 82.1
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 3.5e-45 186.8 139 70.5
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 3.5e-45 186.8 112 80.4
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 4.5e-45 186.4 119 75.6
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 4.5e-45 186.4 112 83.0
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 5.9e-45 186.0 104 88.5
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 7.7e-45 185.7 113 78.8
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.0e-44 185.3 107 83.2
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 1.0e-44 185.3 102 89.2
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.3e-44 184.9 107 83.2
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 1.3e-44 184.9 108 82.4
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 1.7e-44 184.5 107 83.2
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 2.9e-44 183.7 113 77.9
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 3.8e-44 183.3 99 89.9
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 1.1e-43 181.8 135 71.1
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 1.5e-43 181.4 99 89.9
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 1.5e-43 181.4 151 64.9
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 1.9e-43 181.0 102 86.3
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 3.3e-43 180.3 110 80.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 4.2e-43 179.9 99 88.9
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 7.2e-43 179.1 102 86.3
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 3.6e-42 176.8 99 86.9
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 4.7e-42 176.4 110 75.5
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 4.7e-42 176.4 144 64.6
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 6.1e-42 176.0 109 79.8
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 1.8e-41 174.5 99 87.9
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.8e-41 174.5 138 65.9
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 3.0e-41 173.7 110 73.6
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 3.0e-41 173.7 109 78.0
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 5.2e-41 172.9 109 77.1
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 1.5e-40 171.4 109 77.1
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 4.4e-40 169.9 98 84.7
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 4.9e-39 166.4 102 80.4
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 1.2e-37 161.8 110 73.6
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 7.8e-37 159.1 107 73.8
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 1.5e-35 154.8 115 67.8
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 1.5e-35 154.8 115 67.8
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 1.6e-34 151.4 115 67.8
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.6e-34 151.4 91 78.0
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 1.0e-33 148.7 109 64.2
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 1.9e-27 127.9 108 60.2
Lalb_Chr14g0370511 Lupinus albus HOM05D003579 ORTHO05D004266 3.4e-24 117.1 70 78.6
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 5.4e-22 109.8 58 91.4
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 7.8e-21 105.9 56 89.3
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 1.5e-19 101.7 60 78.3
AUR62037660 Chenopodium quinoa HOM05D000290 ORTHO05D007415 1.6e-18 98.2 195 39.5
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 7.6e-16 89.4 112 43.8
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 1.9e-14 84.7 109 43.1
ClCG04G012790 Citrullus lanatus HOM05D003579 ORTHO05D004266 9.2e-14 82.4 46 84.8
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 4.6e-13 80.1 57 71.9
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 2.1e-10 71.2 37 91.9
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 4.0e-09 67.0 37 83.8
AUR62036405 Chenopodium quinoa HOM05D000929 ORTHO05D004813 4.9e-07 60.1 207 36.7


User provided reference genes

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