Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.4e-52 207.6 100 100.0
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.3e-48 196.1 100 94.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 7.8e-41 170.2 100 81.0
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 2.8e-38 161.8 100 78.0
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.9e-35 151.8 100 73.0
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.9e-34 149.1 105 70.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 4.6e-33 144.4 101 70.3
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.0e-32 141.7 101 72.3
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 5.1e-32 141.0 100 70.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 6.6e-32 140.6 100 70.0
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.5e-31 139.4 100 67.0
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.5e-31 138.7 100 67.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 3.3e-31 138.3 100 69.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 4.3e-31 137.9 100 68.0
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 7.3e-31 137.1 101 69.3
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 9.6e-31 136.7 99 69.7
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 9.6e-31 136.7 100 66.0
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.3e-30 136.3 100 67.0
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.3e-30 136.3 101 63.4
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-30 136.3 90 72.2
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.3e-30 136.3 90 72.2
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.6e-30 136.0 100 68.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 2.1e-30 135.6 100 69.0
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.1e-30 135.6 100 69.0
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 2.1e-30 135.6 100 65.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.8e-30 135.2 100 65.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 2.8e-30 135.2 100 69.0
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.8e-30 135.2 102 66.7
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.8e-30 135.2 100 67.0
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.6e-30 134.8 100 66.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.6e-30 134.8 100 66.0
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 4.8e-30 134.4 100 65.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 4.8e-30 134.4 100 65.0
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 4.8e-30 134.4 94 67.0
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 6.2e-30 134.0 89 70.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 6.2e-30 134.0 102 64.7
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 6.2e-30 134.0 104 64.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 8.1e-30 133.7 100 65.0
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 8.1e-30 133.7 102 64.7
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.4e-29 132.9 89 68.5
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.4e-29 132.9 89 69.7
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.4e-29 132.9 102 63.7
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.4e-29 132.9 100 65.0
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.4e-29 132.1 89 69.7
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-29 132.1 89 69.7
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.4e-29 132.1 89 69.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-29 132.1 94 66.0
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.4e-29 132.1 95 65.3
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.4e-29 132.1 100 65.0
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.4e-29 132.1 100 65.0
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 2.4e-29 132.1 100 65.0
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.4e-29 132.1 88 70.5
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.1e-29 131.7 100 65.0
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.1e-29 131.7 102 63.7
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.1e-29 131.7 94 66.0
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.1e-29 131.7 94 64.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.1e-29 131.7 100 65.0
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.1e-29 131.7 100 64.0
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.0e-29 131.3 100 63.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 4.0e-29 131.3 100 67.0
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 4.0e-29 131.3 100 65.0
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 5.3e-29 131.0 99 67.7
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 6.9e-29 130.6 89 68.5
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 6.9e-29 130.6 89 68.5
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 9.0e-29 130.2 100 63.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 9.0e-29 130.2 99 66.7
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 9.0e-29 130.2 100 66.0
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.2e-28 129.8 89 67.4
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.2e-28 129.8 89 67.4
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.2e-28 129.8 89 67.4
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.2e-28 129.8 100 64.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.5e-28 129.4 100 61.0
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.5e-28 129.4 105 62.9
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.5e-28 129.4 95 64.2
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.6e-28 128.6 100 63.0
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.6e-28 128.6 93 63.4
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 3.4e-28 128.3 100 62.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 3.4e-28 128.3 105 61.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.4e-28 128.3 100 65.0
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.4e-28 128.3 92 66.3
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 4.4e-28 127.9 101 64.4
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 4.4e-28 127.9 101 63.4
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 5.8e-28 127.5 100 62.0
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 5.8e-28 127.5 101 66.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.8e-28 127.5 101 62.4
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 5.8e-28 127.5 89 66.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 5.8e-28 127.5 108 60.2
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 7.6e-28 127.1 98 64.3
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 7.6e-28 127.1 89 66.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 7.6e-28 127.1 101 64.4
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.6e-28 127.1 89 66.3
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.9e-28 126.7 102 63.7
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.3e-27 126.3 87 67.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.3e-27 126.3 100 61.0
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.2e-27 125.6 101 60.4
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 2.2e-27 125.6 98 63.3
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 2.9e-27 125.2 102 63.7
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.9e-27 125.2 101 62.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 6.4e-27 124.0 89 64.0
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 6.4e-27 124.0 100 62.0
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.4e-26 122.9 99 59.6
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.9e-26 122.5 109 59.6
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.9e-26 122.5 88 63.6
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.2e-26 121.7 129 53.5
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.2e-26 121.7 129 53.5
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.2e-26 121.7 129 53.5
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 3.2e-26 121.7 98 60.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 4.2e-26 121.3 89 61.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.3e-26 120.2 99 61.6
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-25 119.8 129 52.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.7e-25 118.6 95 62.1
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.7e-25 118.6 100 58.0
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.7e-25 118.6 88 62.5
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 6.0e-25 117.5 102 58.8
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 7.8e-25 117.1 100 57.0
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.7e-24 115.9 89 64.0
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.3e-24 115.5 88 59.1
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 3.0e-24 115.2 96 58.3
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 8.7e-24 113.6 95 61.1
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.5e-23 112.8 88 63.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.5e-23 112.8 88 59.1
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.3e-23 111.7 84 67.9
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 1.8e-21 105.9 106 50.9
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 9.0e-21 103.6 100 53.0
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-20 103.2 97 54.6
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.9e-19 98.6 64 68.8
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-18 96.7 97 51.5
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 5.4e-18 94.4 72 59.7
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.3e-16 89.7 65 55.4
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 4.5e-12 74.7 61 67.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.9e-11 72.0 45 64.4
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 4.9e-11 71.2 41 73.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-10 69.3 38 73.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 4.2e-10 68.2 67 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 9.3e-10 67.0 76 38.2
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.5e-07 59.7 68 35.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.5e-07 58.9 88 38.6


User provided reference genes

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