Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.1e-96 355.1 183 100.0
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.0e-95 352.4 183 98.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 4.2e-93 344.7 178 99.4
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 2.2e-73 279.3 179 79.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 5.2e-67 258.1 175 73.7
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 9.8e-66 253.8 177 71.2
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.3e-65 253.4 171 74.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.3e-65 253.4 180 72.2
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.2e-65 252.7 181 67.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 2.2e-65 252.7 180 74.4
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 4.9e-65 251.5 175 73.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 4.9e-65 251.5 181 71.3
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 8.3e-65 250.8 180 71.1
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.9e-64 249.6 174 71.8
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.4e-64 249.2 181 69.6
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 2.4e-64 249.2 173 73.4
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 7.0e-64 247.7 181 69.6
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 7.0e-64 247.7 179 68.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 9.2e-64 247.3 171 74.9
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.2e-63 246.9 182 70.3
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.2e-63 246.9 172 72.7
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.6e-63 246.5 176 69.3
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.0e-63 246.1 182 67.6
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.7e-63 245.7 174 71.3
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 6.0e-63 244.6 181 69.1
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 7.8e-63 244.2 175 69.1
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.0e-62 243.8 175 72.6
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.3e-62 242.7 175 68.6
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.3e-62 242.7 175 68.6
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 6.6e-62 241.1 173 69.9
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.1e-61 240.4 183 65.6
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.5e-61 240.0 174 68.4
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.9e-61 239.6 172 71.5
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 9.5e-61 237.3 174 69.5
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 9.5e-61 237.3 185 68.1
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.2e-60 236.9 173 68.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.2e-60 236.9 179 67.6
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.8e-60 235.7 174 66.7
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 3.6e-60 235.3 171 69.6
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 6.2e-60 234.6 172 69.2
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 8.1e-60 234.2 171 66.1
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 8.1e-60 234.2 194 65.5
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 8.1e-60 234.2 183 67.2
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.1e-59 233.8 175 69.1
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.1e-59 233.8 172 68.6
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.1e-59 233.8 174 67.8
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.1e-59 233.8 197 63.5
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.4e-59 233.4 181 62.4
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.8e-59 233.0 171 68.4
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.8e-59 233.0 163 70.6
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-59 232.6 172 70.3
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-59 232.6 171 70.8
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.3e-59 232.6 197 62.9
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 4.0e-59 231.9 170 68.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.0e-59 231.9 179 67.0
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 5.2e-59 231.5 174 67.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 5.2e-59 231.5 173 67.1
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 6.8e-59 231.1 159 73.6
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 8.9e-59 230.7 179 66.5
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 1.2e-58 230.3 159 71.7
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.6e-58 229.2 176 67.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.6e-58 229.2 179 66.5
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.4e-58 228.8 206 60.2
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.4e-58 228.8 160 71.2
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 4.4e-58 228.4 161 70.2
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.8e-58 228.0 164 70.1
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 5.8e-58 228.0 156 73.1
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 7.5e-58 227.6 174 65.5
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 9.9e-58 227.3 184 65.8
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 9.9e-58 227.3 170 65.9
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 1.3e-57 226.9 185 63.2
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 1.3e-57 226.9 171 66.1
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.3e-57 226.9 179 66.5
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 165 70.3
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.2e-57 226.1 134 87.3
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.2e-57 226.1 171 69.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 3.7e-57 225.3 177 65.5
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 4.9e-57 224.9 179 65.4
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.9e-57 224.9 166 71.1
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.4e-57 224.6 176 65.9
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 6.4e-57 224.6 170 64.7
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 8.3e-57 224.2 164 67.7
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.4e-56 223.4 160 68.1
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 1.4e-56 223.4 176 65.9
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 1.4e-56 223.4 176 65.9
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.4e-56 223.4 178 62.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 2.4e-56 222.6 157 72.0
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-56 222.6 174 65.5
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.4e-56 222.6 174 65.5
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.1e-56 221.1 174 64.9
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 7.1e-56 221.1 154 70.1
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 7.1e-56 221.1 154 70.1
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 9.2e-56 220.7 177 63.3
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 9.2e-56 220.7 177 63.3
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 9.2e-56 220.7 179 63.1
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 9.2e-56 220.7 175 63.4
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-55 220.3 159 67.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.6e-55 219.9 181 60.8
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.6e-55 219.9 158 72.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.6e-55 219.9 177 61.6
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.1e-55 219.5 157 64.3
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.1e-55 219.5 161 69.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-55 219.2 154 69.5
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 7.8e-55 217.6 151 70.9
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 7.8e-55 217.6 219 54.8
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.3e-54 216.1 177 62.7
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.3e-54 216.1 167 65.3
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.9e-54 215.3 170 64.7
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.9e-54 215.3 190 63.2
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-53 213.4 172 64.5
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.3e-53 212.2 162 66.7
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.6e-53 211.5 175 62.3
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 7.3e-53 211.1 157 63.1
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 9.5e-53 210.7 171 63.7
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.2e-52 210.3 157 66.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.6e-52 209.9 206 56.3
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.2e-52 208.0 167 59.3
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.1e-51 207.2 160 66.9
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.4e-51 206.8 174 62.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.4e-51 206.1 153 66.0
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.4e-51 206.1 153 66.0
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.4e-51 206.1 174 61.5
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.1e-51 205.7 153 65.4
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.2e-51 204.9 204 56.9
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 5.2e-51 204.9 123 78.9
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 6.8e-51 204.5 183 58.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 4.4e-50 201.8 161 65.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 4.4e-50 201.8 127 73.2
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 7.6e-50 201.1 122 80.3
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 1.7e-49 199.9 161 60.2
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 6.4e-49 198.0 201 55.2
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.1e-48 197.2 164 62.8
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.0e-46 190.7 130 71.5
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 3.0e-46 189.1 125 76.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.6e-45 184.9 123 74.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 7.3e-45 184.5 123 74.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 2.1e-44 183.0 126 69.0
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 2.8e-44 182.6 124 72.6
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-41 173.3 158 60.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.4e-40 169.5 134 67.9
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 5.4e-40 168.3 154 57.1
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 7.1e-40 167.9 151 55.0
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 9.3e-40 167.5 130 61.5
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 2.1e-39 166.4 149 56.4
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.7e-39 166.0 123 70.7
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.7e-39 166.0 143 55.2
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 6.6e-38 161.4 140 54.3
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.9e-37 159.8 136 61.8
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 6.2e-36 154.8 118 66.1
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.8e-34 148.3 154 49.4
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 9.9e-34 147.5 151 45.7
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 9.9e-34 147.5 153 47.1
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 2.3e-30 136.3 88 71.6
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.6e-29 131.7 115 60.0
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.8e-25 119.0 110 60.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.4e-24 117.1 95 60.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.1e-19 100.9 146 41.1
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.8e-17 92.4 89 57.3
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 4.3e-13 79.0 78 44.9
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 7.7e-10 68.2 46 76.1
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 7.7e-10 68.2 46 76.1
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.9e-09 66.2 44 72.7
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 3.8e-09 65.9 46 73.9
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.0e-09 65.5 47 72.3
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.1e-08 64.3 46 58.7


User provided reference genes

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