Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 3124.7 1583 100.0
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2773.0 1614 88.5
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2689.1 1614 84.2
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2382.1 1612 74.9
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2380.9 1618 74.8
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2376.7 1608 75.0
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2370.1 1608 74.6
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2364.3 1618 74.5
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2363.2 1623 74.2
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2361.3 1620 74.8
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2356.3 1619 74.0
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2354.7 1516 79.4
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2350.1 1624 74.3
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2345.9 1625 74.1
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2338.5 1618 73.2
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2337.8 1617 73.7
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2337.4 1619 73.6
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2333.5 1618 73.2
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2323.9 1621 73.4
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2323.1 1617 73.3
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2322.0 1619 72.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2321.2 1618 73.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2318.1 1623 73.2
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2312.3 1626 73.1
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2308.5 1616 73.1
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2308.5 1473 80.4
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2305.0 1607 73.3
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2300.4 1624 72.8
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2281.1 1622 71.8
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2281.1 1590 73.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2278.4 1623 72.2
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2270.0 1623 71.8
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2269.6 1644 71.4
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2263.4 1614 70.9
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2260.7 1623 71.3
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1645 71.5
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1619 72.4
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2238.8 1627 70.8
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2237.6 1515 74.9
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2231.4 1517 74.8
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2221.8 1650 69.8
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2218.0 1611 69.8
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2211.4 1613 70.0
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2211.0 1613 69.2
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2209.1 1610 69.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2207.6 1619 70.1
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2204.1 1623 68.8
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2202.9 1610 68.9
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2202.6 1634 70.0
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2198.3 1617 69.4
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2197.9 1672 67.5
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2195.6 1922 62.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2194.1 1602 70.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2192.9 1621 69.5
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2191.4 1629 69.6
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2181.0 1627 68.6
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2179.1 1636 68.5
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1608 70.0
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2174.1 1626 69.0
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2165.2 1640 68.2
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2162.9 1617 68.8
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2162.1 1661 68.8
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2158.6 1454 75.0
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2158.3 1639 68.4
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2148.6 1635 67.6
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2139.0 1614 68.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2127.8 1605 68.6
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2121.7 1617 67.8
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2112.0 1603 67.9
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2110.5 1630 67.4
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2093.9 1634 66.8
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2091.2 1630 66.6
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2091.2 1634 66.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2085.8 1629 66.2
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2084.7 1632 66.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2081.2 1633 65.9
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2080.1 1412 73.7
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2072.4 1620 66.5
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2054.6 1114 95.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2052.3 1630 65.8
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2049.6 1620 65.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2031.1 1563 67.6
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2020.0 1607 65.8
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2009.2 1609 65.6
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1998.4 1952 56.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1994.9 1419 73.2
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1959.9 1616 63.0
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1946.8 1637 63.8
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1936.0 1380 72.5
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1924.1 1616 62.6
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1897.9 1626 62.4
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1834.7 1209 76.2
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1820.1 1614 59.4
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1817.7 1601 59.5
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1656.3 1572 57.8
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1624.4 1244 67.8
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1578.5 1397 61.3
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1487.6 1370 59.0
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1437.2 992 72.7
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1395.9 991 71.3
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1379.0 1640 47.7
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1329.3 1646 46.3
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1301.2 1223 55.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1271.1 1594 45.0
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1180.2 1094 56.3
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1126.3 747 75.8
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1120.1 1596 44.9
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.1e-269 932.9 643 73.6
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.1e-242 844.7 603 72.5
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 3.8e-238 829.7 630 67.5
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 5.1e-235 819.3 580 72.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-232 811.2 532 77.4
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.8e-224 784.3 656 62.2
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.0e-224 781.9 600 67.8
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.2e-222 777.3 589 68.1
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.0e-203 715.3 503 71.8
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.3e-203 714.9 522 70.9
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 3.8e-182 643.7 638 54.7
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 8.2e-177 625.9 561 60.6
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 3.8e-174 617.1 509 65.4
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.7e-166 591.7 512 61.9
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 3.6e-156 557.4 476 63.9
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 7.5e-154 549.7 406 72.2
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.6e-148 531.9 484 57.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 9.8e-146 522.7 565 52.4
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 4.3e-141 507.3 366 72.4
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 4.9e-137 493.8 323 74.6
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 8.1e-132 476.5 325 76.6
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 7.1e-120 436.8 292 77.1
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.4e-112 410.6 397 54.4
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.1e-111 408.7 326 64.4
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.7e-110 403.3 365 57.5
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.6e-109 400.6 417 54.9
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 1.4e-107 396.0 317 63.7
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 6.9e-107 393.7 253 75.9
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.2e-97 362.1 321 60.7
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 5.5e-88 330.9 250 66.8
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 6.1e-71 274.2 211 68.2
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 5.3e-67 261.2 162 75.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 5.0e-65 254.6 159 79.2
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 3.0e-62 245.4 142 80.3
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 5.5e-56 224.6 142 76.8
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.2e-48 198.7 210 53.8
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.1e-40 173.7 104 82.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-39 169.9 115 73.0
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-39 169.9 115 73.0
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-39 169.9 115 73.0
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-39 169.9 115 73.0
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-39 169.9 115 73.0
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.1e-39 169.5 115 73.0
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-38 166.8 115 72.2
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.3e-38 166.0 115 71.3
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.1e-35 155.2 141 57.4
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.9e-34 151.4 146 56.2
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 7.8e-34 151.0 100 75.0
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 1.9e-32 146.4 92 76.1
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.5e-32 144.1 102 69.6
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 1.6e-31 143.3 100 66.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.6e-31 143.3 102 69.6
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.1e-31 142.9 90 74.4
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 2.0e-26 126.3 84 70.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 3.5e-26 125.6 129 54.3
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 1.9e-24 119.8 100 63.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 4.0e-22 112.1 89 64.0
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 6.8e-22 111.3 89 62.9
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.6e-21 109.4 108 56.5
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.1e-16 94.0 74 58.1
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.8e-15 89.4 55 78.2
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 3.6e-15 89.0 49 75.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.8e-14 86.7 84 56.0
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 4.9e-12 78.6 48 77.1
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 1.1e-11 77.4 51 66.7
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 2.3e-09 69.7 56 64.3
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.9e-08 66.6 54 63.0
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 2.1e-07 63.2 38 65.8
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 8.1e-07 61.2 180 36.1


User provided reference genes

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