Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038444 Chenopodium quinoa HOM05D000095 ORTHO05D015271 3.5e-43 177.9 94 100.0
AUR62038445 Chenopodium quinoa HOM05D000095 ORTHO05D015271 2.7e-35 151.8 94 87.2
AUR62002754 Chenopodium quinoa HOM05D000095 ORTHO05D015271 3.9e-26 121.3 94 76.6
AUR62038662 Chenopodium quinoa HOM05D000095 ORTHO05D015271 1.4e-23 112.8 89 67.4
AUR62018177 Chenopodium quinoa HOM05D000095 ORTHO05D015271 6.9e-23 110.5 89 66.3
EL10Ac2g03110 Beta vulgaris HOM05D000095 ORTHO05D015271 1.5e-22 109.4 89 66.3
Ah.01g013930 Amaranthus hybridus HOM05D000095 ORTHO05D015271 1.6e-16 89.4 89 60.7
Ah.01g014690 Amaranthus hybridus HOM05D000095 ORTHO05D015271 2.2e-16 89.0 92 62.0
EL10Ac6g15034 Beta vulgaris HOM05D000095 ORTHO05D026473 1.1e-12 76.6 64 56.2
Ah.03g142940 Amaranthus hybridus HOM05D000095 ORTHO05D015271 1.2e-11 73.2 64 50.0
Dinv40210 Davidia involucrata HOM05D000095 ORTHO05D000330 2.7e-11 72.0 57 63.2
EL10Ac6g15033 Beta vulgaris HOM05D000095 ORTHO05D015271 7.9e-11 70.5 64 51.6
TAR381G1257 Trochodendron aralioides HOM05D000095 ORTHO05D000330 1.0e-10 70.1 57 57.9
Rhsim10G0191800 Rhododendron simsii HOM05D000095 ORTHO05D015271 1.4e-10 69.7 57 56.1
SalBow5G0412 Salvia bowleyana HOM05D000095 ORTHO05D000330 5.1e-10 67.8 59 54.2
TWI09G1401 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 1.1e-09 66.6 72 54.2
Actinidia32994 Actinidia chinensis HOM05D000095 ORTHO05D000330 1.5e-09 66.2 55 50.9
Cc07_g12090 Coffea canephora HOM05D000095 ORTHO05D000330 3.3e-09 65.1 60 53.3
Nn4g24235 Nelumbo nucifera HOM05D000095 ORTHO05D000330 4.3e-09 64.7 57 52.6
ATR0807G129 Amborella trichopoda HOM05D000095 ORTHO05D000534 7.4e-09 63.9 55 56.4
vmacro20611 Vaccinium macrocarpon HOM05D000095 ORTHO05D000330 1.7e-08 62.8 57 50.9
Cc07_g18210 Coffea canephora HOM05D000095 ORTHO05D000330 4.8e-08 61.2 78 46.2
Atru.chr3.47 Acer truncatum HOM05D000095 ORTHO05D000330 6.3e-08 60.8 57 52.6
Oeu043397.1 Olea europaea HOM05D000095 ORTHO05D012712 8.2e-08 60.5 57 49.1
Oeu043398.1 Olea europaea HOM05D000095 ORTHO05D012712 8.2e-08 60.5 57 49.1
Potri.005G087700 Populus trichocarpa HOM05D000095 ORTHO05D000330 8.2e-08 60.5 64 51.6
PGR102G3307 Punica granatum HOM05D000095 ORTHO05D000330 8.2e-08 60.5 61 47.5
Sabra07G0064200 Salix brachista HOM05D000095 ORTHO05D000330 8.2e-08 60.5 55 52.7
Migut.L00854 Erythranthe guttata HOM05D000095 ORTHO05D012712 1.1e-07 60.1 75 45.3
Manes.11G001300 Manihot esculenta HOM05D000095 ORTHO05D000330 1.1e-07 60.1 55 50.9
Oeu045744.1 Olea europaea HOM05D000095 ORTHO05D012712 1.1e-07 60.1 55 47.3
Glyma.20G011700 Glycine max HOM05D000095 ORTHO05D000330 1.4e-07 59.7 61 47.5
Sabra05G0072500 Salix brachista HOM05D000095 ORTHO05D000330 1.4e-07 59.7 55 50.9
Atru.chr3.46 Acer truncatum HOM05D000095 ORTHO05D000330 1.8e-07 59.3 62 48.4
Cc07_g12570 Coffea canephora HOM05D000095 ORTHO05D000330 1.8e-07 59.3 70 50.0
MELO3C005072.2 Cucumis melo HOM05D000095 ORTHO05D000330 1.8e-07 59.3 53 52.8
Prupe.7G186200 Prunus persica HOM05D000095 ORTHO05D000330 1.8e-07 59.3 67 47.8
SalBow1G7512 Salvia bowleyana HOM05D000095 ORTHO05D357456 1.8e-07 59.3 60 46.7
Ciclev10032259m.g Citrus clementina HOM05D000095 ORTHO05D000330 2.4e-07 58.9 55 52.7
CsaV3_5G020780 Cucumis sativus L. HOM05D000095 ORTHO05D000330 2.4e-07 58.9 53 50.9
Dinv28302 Davidia involucrata HOM05D000095 ORTHO05D012712 2.4e-07 58.9 58 51.7
Lsat_1_v5_gn_3_34521 Lactuca sativa HOM05D000095 ORTHO05D000330 2.4e-07 58.9 56 53.6
Medtr1g033600 Medicago truncatula HOM05D000095 ORTHO05D000330 2.4e-07 58.9 61 49.2
Actinidia35689 Actinidia chinensis HOM05D000095 ORTHO05D012712 3.1e-07 58.5 55 49.1
Potri.007G076200 Populus trichocarpa HOM05D000095 ORTHO05D000330 3.1e-07 58.5 55 52.7
AUR62003726 Chenopodium quinoa HOM05D000095 ORTHO05D015271 4.1e-07 58.2 56 42.9
Haze_17411 Corylus avellana HOM05D000095 ORTHO05D000330 4.1e-07 58.2 55 52.7
CsaV3_5G029080 Cucumis sativus L. HOM05D000095 ORTHO05D000330 4.1e-07 58.2 55 47.3
Duzib052G1214 Durio zibethinus HOM05D000095 ORTHO05D000330 4.1e-07 58.2 57 49.1
Gohir.D12G136200 Gossypium hirsutum HOM05D000095 ORTHO05D000330 4.1e-07 58.2 63 46.0
Gorai.008G147400 Gossypium raimondii HOM05D000095 ORTHO05D000330 4.1e-07 58.2 63 46.0
Phvul.003G013600 Phaseolus vulgaris HOM05D000095 ORTHO05D000330 4.1e-07 58.2 61 45.9
QL01p000848 Quercus lobata HOM05D000095 ORTHO05D000330 4.1e-07 58.2 63 46.0
VMungo1215G2179 Vigna mungo HOM05D000095 ORTHO05D000330 4.1e-07 58.2 61 45.9
Atru.chr11.1264 Acer truncatum HOM05D000095 ORTHO05D000330 5.3e-07 57.8 55 49.1
Atru.chr13.1796 Acer truncatum HOM05D000095 ORTHO05D010257 5.3e-07 57.8 67 49.3
Cfa018657 Carpinus fangiana HOM05D000095 ORTHO05D000330 5.3e-07 57.8 55 52.7
Ca_26281_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000330 5.3e-07 57.8 57 49.1
ClCG01G008050 Citrullus lanatus HOM05D000095 ORTHO05D000330 5.3e-07 57.8 53 50.9
Eucgr.J00349 Eucalyptus grandis HOM05D000095 ORTHO05D000330 5.3e-07 57.8 68 45.6
Glyma.08G290100 Glycine max HOM05D000095 ORTHO05D000330 5.3e-07 57.8 60 48.3
Hma1.2p1_0513F.1_g169490 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 5.3e-07 57.8 55 50.9
Sed0027147 Sechium edule HOM05D000095 ORTHO05D000330 5.3e-07 57.8 53 52.8
TWI53G1991 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 5.3e-07 57.8 55 50.9
TWI74G1277 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 5.3e-07 57.8 55 52.7
HPP92_015508 Vanilla planifolia HOM05D000095 ORTHO05D000330 5.3e-07 57.8 64 42.2
GSVIVG01022310001 Vitis vinifera HOM05D000095 ORTHO05D000330 5.3e-07 57.8 56 51.8
Aqoxy3G04308 Aquilegia oxysepala HOM05D000095 ORTHO05D000330 6.9e-07 57.4 55 52.7
Lj4g0027240 Lotus japonicus HOM05D000095 ORTHO05D000330 6.9e-07 57.4 61 44.3
MBI05_g03461_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 6.9e-07 57.4 55 49.1
Medtr3g111880 Medicago truncatula HOM05D000095 ORTHO05D000534 6.9e-07 57.4 55 50.9
TAR623G0499 Trochodendron aralioides HOM05D000095 ORTHO05D000330 6.9e-07 57.4 55 49.1
MELO3C011759.2 Cucumis melo HOM05D000095 ORTHO05D000330 9.1e-07 57.0 55 47.3
Hma1.2p1_0400F.1_g144410 Hydrangea macrophylla HOM05D000095 ORTHO05D000534 9.1e-07 57.0 57 49.1
Nitab4.5_0002184g0040 Nicotiana tabacum HOM05D000095 ORTHO05D011502 9.1e-07 57.0 60 51.7
RcHm_v2.0_Chr2g0096871 Rosa chinensis HOM05D000095 ORTHO05D000330 9.1e-07 57.0 55 50.9
MSTRG.13673 Avicennia marina HOM05D000095 ORTHO05D000330 1.2e-06 56.6 55 45.5
EL10Ac1g00472 Beta vulgaris HOM05D000095 ORTHO05D000330 1.2e-06 56.6 63 44.4
CiPaw.15G001700 Carya illinoinensis HOM05D000095 ORTHO05D000330 1.2e-06 56.6 63 46.0
Dinv28274 Davidia involucrata HOM05D000095 ORTHO05D000330 1.2e-06 56.6 55 49.1
Duzib093G1019 Durio zibethinus HOM05D000095 ORTHO05D000534 1.2e-06 56.6 56 48.2
Eucgr.G02591 Eucalyptus grandis HOM05D000095 ORTHO05D000330 1.2e-06 56.6 55 50.9
Glyma.18G134200 Glycine max HOM05D000095 ORTHO05D000330 1.2e-06 56.6 60 46.7
MBI08_g23114_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 1.2e-06 56.6 63 46.0
Manes.04G162400 Manihot esculenta HOM05D000095 ORTHO05D000330 1.2e-06 56.6 55 45.5
Medtr8g063870 Medicago truncatula HOM05D000095 ORTHO05D000330 1.2e-06 56.6 59 50.8
Aqoxy5G03030 Aquilegia oxysepala HOM05D000095 ORTHO05D077559 1.5e-06 56.2 59 47.5
MSTRG.2072 Avicennia marina HOM05D000095 ORTHO05D000330 1.5e-06 56.2 55 45.5
Cpa.g.sc138.8 Carica papaya HOM05D000095 ORTHO05D000330 1.5e-06 56.2 55 49.1
Cc11_g00490 Coffea canephora HOM05D000095 ORTHO05D000330 1.5e-06 56.2 55 49.1
Hma1.2p1_0044F.1_g026390 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 1.5e-06 56.2 53 52.8
Hma1.2p1_0944F.1_g239980 Hydrangea macrophylla HOM05D000095 ORTHO05D000534 1.5e-06 56.2 55 50.9
Lsat_1_v5_gn_4_27000 Lactuca sativa HOM05D000095 ORTHO05D000330 1.5e-06 56.2 63 47.6
Phvul.003G054100 Phaseolus vulgaris HOM05D000095 ORTHO05D000330 1.5e-06 56.2 60 46.7
Prupe.1G349700 Prunus persica HOM05D000095 ORTHO05D000330 1.5e-06 56.2 55 49.1
QL06p053308 Quercus lobata HOM05D000095 ORTHO05D000330 1.5e-06 56.2 86 47.7
Sc15g0006960 Simmondsia chinensis HOM05D000095 ORTHO05D000534 1.5e-06 56.2 55 49.1
TAR629G3195 Trochodendron aralioides HOM05D000095 ORTHO05D000330 1.5e-06 56.2 60 46.7
HPP92_018037 Vanilla planifolia HOM05D000095 ORTHO05D000330 1.5e-06 56.2 55 45.5
VMungo0251G3667 Vigna mungo HOM05D000095 ORTHO05D000330 1.5e-06 56.2 60 46.7
Cc10_g02800 Coffea canephora HOM05D000095 ORTHO05D000534 2.0e-06 55.8 61 45.9
Duzib132G0494 Durio zibethinus HOM05D000095 ORTHO05D000330 2.0e-06 55.8 60 45.0
Glyma.07G175500 Glycine max HOM05D000095 ORTHO05D000330 2.0e-06 55.8 61 45.9
Lalb_Chr16g0392471 Lupinus albus HOM05D000095 ORTHO05D000330 2.0e-06 55.8 60 46.7
Nn4g22005 Nelumbo nucifera HOM05D000095 ORTHO05D010257 2.0e-06 55.8 57 43.9
Nn4g25374 Nelumbo nucifera HOM05D000095 ORTHO05D010257 2.0e-06 55.8 57 43.9
SGA_v2.0_scaffold132G34574 Striga asiatica HOM05D000095 ORTHO05D000330 2.0e-06 55.8 68 41.2
Thecc.02G154100 Theobroma cacao HOM05D000095 ORTHO05D000330 2.0e-06 55.8 63 44.4
Zm00001eb367300 Zea mays HOM05D000095 ORTHO05D000330 2.0e-06 55.8 55 49.1
Aa31LG3G18020 Aethionema arabicum HOM05D000095 ORTHO05D000330 2.6e-06 55.5 54 50.0
MSTRG.24185 Avicennia marina HOM05D000095 ORTHO05D011502 2.6e-06 55.5 56 51.8
CANSAT78G1782 Cannabis sativa HOM05D000095 ORTHO05D000330 2.6e-06 55.5 55 50.9
CBR_g34447 Chara braunii HOM05D000095 ORTHO05D000330 2.6e-06 55.5 55 45.5
COL.COLO4_33116 Corchorus olitorius HOM05D000095 ORTHO05D000330 2.6e-06 55.5 57 47.4
Sabra02G0197800 Salix brachista HOM05D000095 ORTHO05D000534 2.6e-06 55.5 56 46.4
Thecc.08G027600 Theobroma cacao HOM05D000095 ORTHO05D000534 2.6e-06 55.5 56 46.4
BcaC03g13231 Brassica carinata HOM05D000095 ORTHO05D000330 3.4e-06 55.1 55 49.1
C02p03640 Brassica napus HOM05D000095 ORTHO05D000330 3.4e-06 55.1 55 49.1
Cpa.g.sc138.12 Carica papaya HOM05D000095 ORTHO05D000330 3.4e-06 55.1 55 47.3
Cpa.g.sc138.5 Carica papaya HOM05D000095 ORTHO05D000330 3.4e-06 55.1 55 47.3
Ciclev10003726m.g Citrus clementina HOM05D000095 ORTHO05D000534 3.4e-06 55.1 56 46.4
Duzib041G0194 Durio zibethinus HOM05D000095 ORTHO05D000534 3.4e-06 55.1 55 47.3
FAN20G2270 Fragaria x ananassa HOM05D000095 ORTHO05D000534 3.4e-06 55.1 61 44.3
FAN23G2915 Fragaria x ananassa HOM05D000095 ORTHO05D000330 3.4e-06 55.1 83 42.2
FAN26G3092 Fragaria x ananassa HOM05D000095 ORTHO05D000330 3.4e-06 55.1 83 42.2
FAN27G0338 Fragaria x ananassa HOM05D000095 ORTHO05D000534 3.4e-06 55.1 61 44.3
Gohir.A04G109440 Gossypium hirsutum HOM05D000095 ORTHO05D000330 3.4e-06 55.1 63 42.9
Gohir.A05G259400 Gossypium hirsutum HOM05D000095 ORTHO05D000534 3.4e-06 55.1 55 47.3
Gohir.D04G149100 Gossypium hirsutum HOM05D000095 ORTHO05D000330 3.4e-06 55.1 63 42.9
Gohir.D05G261400 Gossypium hirsutum HOM05D000095 ORTHO05D000534 3.4e-06 55.1 55 47.3
Gorai.009G273300 Gossypium raimondii HOM05D000095 ORTHO05D000534 3.4e-06 55.1 55 47.3
Gorai.012G135600 Gossypium raimondii HOM05D000095 ORTHO05D000330 3.4e-06 55.1 63 42.9
Lalb_Chr24g0398951 Lupinus albus HOM05D000095 ORTHO05D000534 3.4e-06 55.1 61 44.3
RcHm_v2.0_Chr6g0301111 Rosa chinensis HOM05D000095 ORTHO05D000534 3.4e-06 55.1 61 44.3
vmacro05399 Vaccinium macrocarpon HOM05D000095 ORTHO05D000330 3.4e-06 55.1 60 48.3
CAN.G439.36 Capsicum annuum HOM05D000095 ORTHO05D016174 4.5e-06 54.7 55 50.9
ClCG02G014200 Citrullus lanatus HOM05D000095 ORTHO05D000330 4.5e-06 54.7 55 49.1
Dinv17651 Davidia involucrata HOM05D000095 ORTHO05D000330 4.5e-06 54.7 63 42.9
Duzib116G0139 Durio zibethinus HOM05D000095 ORTHO05D000534 4.5e-06 54.7 55 47.3
FvH4_2g39750 Fragaria vesca HOM05D000095 ORTHO05D000534 4.5e-06 54.7 61 44.3
Gorai.005G212900 Gossypium raimondii HOM05D000095 ORTHO05D000330 4.5e-06 54.7 60 46.7
Hma1.2p1_0413F.1_g147400 Hydrangea macrophylla HOM05D000095 ORTHO05D000330 4.5e-06 54.7 53 52.8
Psat6g131160 Pisum sativum HOM05D000095 ORTHO05D000330 4.5e-06 54.7 61 44.3
Rhsim10G0187000 Rhododendron simsii HOM05D000095 ORTHO05D000330 4.5e-06 54.7 60 46.7
Solyc04g150172.1 Solanum lycopersicum HOM05D000095 ORTHO05D000534 4.5e-06 54.7 59 45.8
Sopen09g002460 Solanum pennellii HOM05D000095 ORTHO05D011502 4.5e-06 54.7 60 46.7
Sopen09g002480 Solanum pennellii HOM05D000095 ORTHO05D011502 4.5e-06 54.7 60 46.7
unitig_699.g19637 Utricularia gibba HOM05D000095 ORTHO05D000330 4.5e-06 54.7 55 43.6
Actinidia04356 Actinidia chinensis HOM05D000095 ORTHO05D000330 5.9e-06 54.3 63 47.6
BcaB08g37250 Brassica carinata HOM05D000095 ORTHO05D000330 5.9e-06 54.3 56 51.8
CSS0005114 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000330 5.9e-06 54.3 82 42.7
CSS0011082 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000330 5.9e-06 54.3 81 39.5
Dinv19099 Davidia involucrata HOM05D000095 ORTHO05D000330 5.9e-06 54.3 60 45.0
Gohir.A12G132800 Gossypium hirsutum HOM05D000095 ORTHO05D000330 5.9e-06 54.3 64 43.8
Lsat_1_v5_gn_3_76680 Lactuca sativa HOM05D000095 ORTHO05D000534 5.9e-06 54.3 57 42.1
Lalb_Chr22g0354741 Lupinus albus HOM05D000095 ORTHO05D000534 5.9e-06 54.3 60 45.0
PSO063G4646 Papaver somniferum HOM05D000095 ORTHO05D000330 5.9e-06 54.3 61 47.5
Prupe.1G378800 Prunus persica HOM05D000095 ORTHO05D000534 5.9e-06 54.3 61 42.6
TPR.G35931 Trifolium pratense HOM05D000095 ORTHO05D000534 5.9e-06 54.3 55 49.1
TPR.G39769 Trifolium pratense HOM05D000095 ORTHO05D000330 5.9e-06 54.3 69 42.0
TAR362G1292 Trochodendron aralioides HOM05D000095 ORTHO05D010257 5.9e-06 54.3 57 43.9
vmacro18473 Vaccinium macrocarpon HOM05D000095 ORTHO05D012712 5.9e-06 54.3 72 41.7
BcaB01g05589 Brassica carinata HOM05D000095 ORTHO05D000330 7.7e-06 53.9 55 47.3
Cc02_g09550 Coffea canephora HOM05D000095 ORTHO05D000330 7.7e-06 53.9 58 43.1
COL.COLO4_26304 Corchorus olitorius HOM05D000095 ORTHO05D000534 7.7e-06 53.9 61 42.6
FvH4_1g10080 Fragaria vesca HOM05D000095 ORTHO05D000330 7.7e-06 53.9 71 43.7
FAN23G1132 Fragaria x ananassa HOM05D000095 ORTHO05D000330 7.7e-06 53.9 71 43.7
Gohir.D05G196766 Gossypium hirsutum HOM05D000095 ORTHO05D047083 7.7e-06 53.9 56 44.6
Gorai.009G201700 Gossypium raimondii HOM05D000095 ORTHO05D047083 7.7e-06 53.9 56 44.6
MBI19_g30277_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D010257 7.7e-06 53.9 60 40.0
Manes.18G025666 Manihot esculenta HOM05D000095 ORTHO05D000534 7.7e-06 53.9 56 44.6
Nn4g25161 Nelumbo nucifera HOM05D000095 ORTHO05D000330 7.7e-06 53.9 55 49.1
Potri.007G064600 Populus trichocarpa HOM05D000095 ORTHO05D000330 7.7e-06 53.9 86 39.5
Solyc12g089170.3 Solanum lycopersicum HOM05D000095 ORTHO05D000534 7.7e-06 53.9 53 49.1
Sopen12g031050 Solanum pennellii HOM05D000095 ORTHO05D000534 7.7e-06 53.9 53 49.1
vmacro04531 Vaccinium macrocarpon HOM05D002235 ORTHO05D005799 7.7e-06 53.9 62 45.2


User provided reference genes

Program Settings