Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 3.5e-161 571.6 300 100.0
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.5e-143 513.1 281 97.5
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 2.5e-135 485.7 300 85.0
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 5.6e-135 484.6 300 85.7
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 4.6e-113 411.8 300 74.3
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.4e-108 395.6 300 69.3
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 3.4e-108 395.6 300 69.3
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 2.9e-107 392.5 299 70.2
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.1e-106 390.6 300 69.7
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 3.0e-104 382.5 299 68.9
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 5.1e-104 381.7 290 70.0
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 5.1e-104 381.7 290 70.0
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 5.1e-104 381.7 300 68.0
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 6.7e-104 381.3 300 67.7
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 8.7e-104 380.9 289 70.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 8.7e-104 380.9 297 69.4
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 5.7e-103 378.3 300 67.7
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 7.4e-103 377.9 300 68.0
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 7.4e-103 377.9 295 68.1
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 9.7e-103 377.5 297 67.0
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 6.3e-102 374.8 300 66.3
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 2.4e-101 372.9 298 67.4
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 3.1e-101 372.5 297 65.0
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 3.1e-101 372.5 297 65.0
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 4.1e-101 372.1 295 66.8
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 5.3e-101 371.7 295 66.8
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 9.0e-101 370.9 297 66.3
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 9.0e-101 370.9 300 66.3
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.5e-100 370.2 295 66.4
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 2.0e-100 369.8 295 66.8
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.0e-100 369.8 297 65.0
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.6e-100 369.4 297 65.0
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 3.4e-100 369.0 297 65.0
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.5e-100 368.6 298 67.1
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 4.5e-100 368.6 295 67.1
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 4.5e-100 368.6 295 66.1
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 5.9e-100 368.2 295 66.4
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 5.9e-100 368.2 295 66.4
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 7.7e-100 367.9 297 67.0
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 1.0e-99 367.5 295 66.1
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 1.0e-99 367.5 298 66.8
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.3e-99 367.1 298 64.8
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.7e-99 366.7 298 64.8
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 1.7e-99 366.7 281 70.8
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 1.7e-99 366.7 295 66.1
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 2.2e-99 366.3 295 66.1
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.2e-99 366.3 295 65.1
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 2.2e-99 366.3 297 64.6
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.2e-99 366.3 295 66.8
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 2.9e-99 365.9 297 66.0
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 6.5e-99 364.8 281 68.0
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 6.5e-99 364.8 295 66.8
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-98 364.0 300 65.7
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.1e-98 364.0 290 67.2
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.9e-98 363.2 295 64.7
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.5e-98 362.8 295 65.4
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.5e-98 362.8 289 66.8
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 3.2e-98 362.5 295 65.1
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 3.2e-98 362.5 289 67.5
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 4.2e-98 362.1 295 65.4
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 5.5e-98 361.7 290 67.6
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 5.5e-98 361.7 297 65.0
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 5.5e-98 361.7 295 66.1
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 7.2e-98 361.3 295 65.8
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 1.6e-97 360.1 295 65.1
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.6e-97 360.1 297 65.7
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 2.1e-97 359.8 290 66.6
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.7e-97 359.4 290 67.2
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 4.6e-97 358.6 295 65.4
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 1.4e-96 357.1 290 67.6
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 1.4e-96 357.1 296 64.9
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 5.1e-96 355.1 298 63.8
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 5.1e-96 355.1 290 64.8
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 6.7e-96 354.8 290 65.5
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 1.1e-95 354.0 295 63.7
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 1.5e-95 353.6 298 63.4
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 3.3e-95 352.4 289 64.4
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 4.3e-95 352.1 298 62.4
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 4.3e-95 352.1 295 67.1
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 9.7e-95 350.9 297 63.3
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 1.3e-94 350.5 298 63.4
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.3e-94 350.5 290 66.2
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 1.7e-94 350.1 300 63.3
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 4.8e-94 348.6 291 62.5
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 8.2e-94 347.8 291 64.6
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 1.1e-93 347.4 291 64.6
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 1.8e-93 346.7 291 62.5
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 1.8e-93 346.7 291 62.5
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 2.4e-93 346.3 290 62.4
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 3.1e-93 345.9 301 63.5
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 5.3e-93 345.1 295 62.7
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.2e-92 344.0 295 62.7
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 5.9e-92 341.7 200 95.5
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 2.9e-91 339.3 291 60.8
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 5.0e-91 338.6 289 63.3
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.5e-90 336.3 281 65.5
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 4.2e-90 335.5 299 60.9
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 9.4e-90 334.3 298 61.1
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 3.6e-89 332.4 298 60.4
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 2.0e-87 326.6 281 64.4
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 2.0e-87 326.6 299 58.9
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 3.7e-86 322.4 296 59.5
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 4.8e-86 322.0 297 58.9
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 1.2e-84 317.4 291 59.1
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 8.5e-83 311.2 298 57.7
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 9.4e-82 307.8 273 61.9
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 2.3e-72 276.6 276 58.0
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 2.7e-68 263.1 301 52.5
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 4.5e-68 262.3 307 49.2
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-65 254.2 220 63.2
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 5.7e-63 245.4 201 66.7
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 2.7e-60 236.5 195 64.1
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 2.7e-60 236.5 291 48.8
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 2.5e-58 229.9 289 48.8
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 5.4e-53 212.2 336 43.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 9.2e-53 211.5 163 66.9
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.9e-50 203.8 191 57.1
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 7.3e-50 201.8 159 64.8
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 9.5e-42 174.9 289 42.2
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 2.3e-40 170.2 132 66.7
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 4.4e-39 166.0 139 62.6
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 3.6e-33 146.4 235 44.7
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 8.4e-30 135.2 196 44.4
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 8.4e-30 135.2 115 67.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 1.1e-29 134.8 186 45.2
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.2e-29 133.3 158 49.4
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.1e-28 130.6 179 41.3
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 3.9e-27 126.3 104 66.3
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 2.1e-25 120.6 90 68.9
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 8.1e-25 118.6 96 65.6
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 3.9e-19 99.8 292 30.1
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 5.3e-16 89.4 50 82.0
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 3.8e-14 83.2 60 63.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 1.9e-13 80.9 86 51.2
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 7.1e-13 79.0 181 33.7
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 4.6e-12 76.3 40 82.5
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.3e-11 74.7 306 25.2
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 1.1e-10 71.6 84 54.8


User provided reference genes

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