Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 0.0e+00 2106.3 1164 100.0
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 0.0e+00 1845.5 1182 88.4
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 0.0e+00 1228.8 1171 60.4
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.0e-285 985.7 1139 54.3
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.4e-250 869.8 1175 48.1
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 9.6e-191 671.8 1187 40.9
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 1.3e-182 644.8 1196 41.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 7.7e-172 609.0 1246 40.0
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 2.9e-171 607.1 1212 40.6
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-164 585.1 1207 39.4
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 7.7e-164 582.4 1233 37.9
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.6e-161 574.7 1190 39.4
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 4.7e-161 573.2 1213 38.7
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.4e-160 571.6 1235 38.5
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 2.6e-159 567.4 1222 38.5
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 3.3e-159 567.0 1206 38.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 2.8e-158 563.9 1236 38.6
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 8.2e-158 562.4 1203 38.8
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.1e-157 562.0 1213 38.7
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.6e-156 558.1 1213 37.5
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 3.5e-156 557.0 1254 37.0
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.9e-154 551.2 1206 38.5
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 6.1e-153 546.2 1210 37.9
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 2.3e-152 544.3 1212 38.1
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 5.2e-152 543.1 1204 37.4
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 4.4e-151 540.0 1225 37.2
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 4.4e-151 540.0 1236 37.9
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 4.8e-150 536.6 1227 37.5
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 6.3e-150 536.2 1205 37.6
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.8e-149 534.6 1207 37.9
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 2.4e-149 534.3 1201 35.6
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 2.4e-149 534.3 1162 37.7
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 7.0e-149 532.7 1207 37.9
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.0e-147 528.9 1205 37.4
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.7e-147 528.1 1201 37.1
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 3.0e-144 517.3 1185 36.9
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 8.8e-144 515.8 1216 35.4
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 8.3e-142 509.2 1214 35.6
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 2.7e-140 504.2 1211 37.2
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 7.7e-140 502.7 1238 36.3
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 8.5e-139 499.2 1208 35.3
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 3.6e-137 493.8 1206 36.8
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 2.6e-135 487.6 1223 36.4
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 3.4e-135 487.3 1207 36.7
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 4.4e-135 486.9 1206 36.2
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 2.2e-134 484.6 1206 35.5
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 2.8e-134 484.2 1204 35.3
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 8.3e-134 482.6 1207 35.9
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 4.1e-133 480.3 1205 34.7
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 2.9e-131 474.2 1207 34.1
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 7.3e-130 469.5 1192 35.7
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 3.0e-128 464.2 1207 34.2
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.6e-127 461.1 1213 35.9
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 7.5e-127 459.5 1208 33.8
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 8.3e-126 456.1 1214 35.2
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 4.1e-125 453.8 1157 35.8
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.7e-123 448.4 1188 34.9
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.0e-123 447.6 1351 32.6
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 4.3e-122 443.7 1210 33.2
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 1.8e-120 438.3 1198 33.9
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 7.5e-119 433.0 1197 33.4
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 2.7e-116 424.5 1203 34.1
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 4.6e-116 423.7 1212 34.1
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 7.8e-116 422.9 1203 34.1
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 8.6e-115 419.5 1175 33.8
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.1e-114 419.1 1198 33.6
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 3.3e-114 417.5 1224 31.9
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 2.8e-113 414.5 1177 33.6
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.6e-113 414.1 1240 34.2
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.2e-111 409.1 1140 34.1
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.7e-107 395.2 1088 34.1
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.5e-106 391.3 1223 31.8
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.7e-105 387.1 1194 32.2
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 6.4e-102 376.7 1138 33.7
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.1e-101 375.9 1212 31.5
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 2.1e-100 371.7 1141 32.3
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.3e-99 368.2 1139 32.5
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.1e-98 365.9 1210 32.1
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 4.4e-95 354.0 1154 32.1
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 4.4e-95 354.0 1179 31.6
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 5.8e-95 353.6 1205 30.7
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 2.4e-93 348.2 1128 31.3
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 4.6e-92 344.0 1165 30.9
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 4.6e-92 344.0 1165 30.9
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 4.6e-92 344.0 1165 30.9
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 6.0e-92 343.6 1236 29.4
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 6.0e-92 343.6 1212 30.4
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 6.0e-92 343.6 1168 31.2
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.3e-91 342.4 1168 31.2
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 3.9e-91 340.9 1164 30.8
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 8.7e-91 339.7 1166 29.8
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 2.2e-86 325.1 1178 30.0
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 2.9e-86 324.7 419 49.2
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 2.1e-84 318.5 1061 32.4
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 3.4e-79 301.2 1192 28.6
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 4.5e-79 300.8 1047 30.8
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 2.4e-77 295.0 982 33.4
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.3e-73 282.7 1188 28.2
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.8e-72 278.9 1161 29.2
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 5.8e-71 273.9 1280 26.5
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.1e-69 269.6 1202 27.0
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.4e-69 269.2 463 40.8
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 5.5e-69 267.3 885 32.8
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.0e-68 263.8 840 31.7
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.3e-62 246.1 362 45.0
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.9e-62 245.0 1252 26.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 3.8e-54 218.0 261 52.5
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 3.2e-53 214.9 906 29.2
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.7e-50 203.4 1048 28.1
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 2.2e-49 202.2 1165 26.1
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 1.1e-48 199.9 992 27.1
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 1.3e-46 193.0 1067 26.6
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.7e-46 192.6 158 62.0
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 2.7e-44 185.3 282 45.0
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 6.1e-44 184.1 594 33.3
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 7.9e-44 183.7 144 62.5
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 1.3e-41 176.4 735 30.3
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 4.1e-40 171.4 364 35.4
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 1.0e-38 166.8 354 33.6
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 6.5e-38 164.1 392 35.2
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 1.2e-34 153.3 460 32.2
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 4.4e-34 151.4 324 40.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 5.9e-31 141.0 121 62.0
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 5.0e-30 137.9 121 61.2
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 5.9e-23 114.4 219 39.7
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 1.3e-22 113.2 1017 24.3
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.3e-22 112.5 709 25.0
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 8.6e-22 110.5 356 30.6
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.1e-20 105.9 130 47.7
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 2.8e-20 105.5 105 51.4
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 8.0e-20 104.0 61 73.8
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 1.5e-18 99.8 134 45.5
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.4e-16 91.3 129 41.1
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.3e-14 85.9 58 72.4
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 1.1e-13 83.6 60 63.3
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-11 76.6 163 36.2
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.5e-10 73.2 194 32.0
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 1.3e-09 70.1 113 37.2
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.7e-09 69.7 58 63.8
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 1.7e-09 69.7 53 66.0
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.1e-08 67.0 56 62.5
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.6e-07 61.6 53 60.4
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 5.9e-07 61.2 248 27.8


User provided reference genes

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