Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.2e-146 522.3 269 100.0
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 6.2e-117 424.5 269 84.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 4.8e-93 345.1 236 73.7
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 1.3e-82 310.5 323 55.4
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.4e-81 307.0 237 67.9
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 1.0e-79 300.8 242 68.6
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.4e-68 263.8 228 61.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 4.5e-67 258.8 223 63.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 7.7e-67 258.1 218 64.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.3e-66 257.3 240 57.9
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.7e-66 256.9 224 61.6
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 6.5e-66 255.0 224 61.2
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 6.5e-66 255.0 234 57.7
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 1.1e-65 254.2 228 61.4
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 2.5e-65 253.1 222 60.8
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 5.5e-65 251.9 218 61.0
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 7.2e-65 251.5 233 57.9
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 7.2e-65 251.5 226 59.3
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-64 250.8 244 57.0
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 2.1e-64 250.0 243 57.6
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 4.6e-64 248.8 222 61.3
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 4.6e-64 248.8 225 58.7
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 7.9e-64 248.1 223 61.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 1.0e-63 247.7 232 59.5
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.4e-63 247.3 221 61.1
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.4e-63 247.3 235 59.1
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.3e-63 246.5 222 59.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 3.9e-63 245.7 224 58.9
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 5.1e-63 245.4 225 59.6
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 8.8e-63 244.6 235 58.3
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.1e-62 244.2 222 60.4
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.1e-62 244.2 222 59.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.5e-62 243.8 237 57.0
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 2.6e-62 243.0 242 56.6
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 4.4e-62 242.3 238 55.9
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 7.4e-62 241.5 224 58.9
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 1.3e-61 240.7 244 56.1
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 1.3e-61 240.7 225 59.1
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 1.3e-61 240.7 226 57.5
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 2.2e-61 240.0 223 59.2
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 8.2e-61 238.0 238 54.6
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.1e-60 237.7 218 58.3
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.4e-60 237.3 221 57.9
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.8e-60 236.9 217 58.1
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.4e-60 236.5 219 59.4
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 3.1e-60 236.1 240 54.6
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 3.1e-60 236.1 251 52.6
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 4.1e-60 235.7 218 57.3
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 4.1e-60 235.7 220 59.1
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.1e-60 235.7 235 56.2
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 5.3e-60 235.3 241 53.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 5.3e-60 235.3 251 52.6
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 5.3e-60 235.3 237 55.7
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 6.9e-60 235.0 219 58.0
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 6.9e-60 235.0 242 52.5
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 6.9e-60 235.0 219 59.4
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 6.9e-60 235.0 228 58.3
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 9.1e-60 234.6 218 57.3
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.4e-59 232.6 218 56.9
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.4e-59 232.6 217 56.2
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 3.4e-59 232.6 242 55.8
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 4.5e-59 232.3 225 56.0
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.5e-59 232.3 227 57.3
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 4.5e-59 232.3 239 53.6
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 5.9e-59 231.9 239 52.3
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 5.9e-59 231.9 242 57.0
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 1.0e-58 231.1 232 51.7
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 1.3e-58 230.7 208 59.1
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 1.3e-58 230.7 244 55.7
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.7e-58 230.3 236 55.1
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 1.7e-58 230.3 144 77.1
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.7e-58 230.3 235 54.5
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 2.2e-58 229.9 206 59.7
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 2.2e-58 229.9 246 52.8
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 6.5e-58 228.4 231 55.4
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 1.1e-57 227.6 236 53.4
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.9e-57 226.9 239 52.3
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 2.5e-57 226.5 218 56.0
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 3.2e-57 226.1 224 56.2
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 2.7e-56 223.0 220 56.4
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.6e-56 222.6 242 52.9
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.4e-55 220.7 234 50.0
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 1.4e-55 220.7 237 49.8
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-55 220.3 240 51.2
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 8.8e-55 218.0 151 70.9
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.0e-54 216.9 230 50.0
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.0e-54 216.9 235 51.5
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.0e-54 216.9 238 55.9
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.0e-54 216.9 227 53.3
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.4e-54 215.7 240 50.4
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.4e-54 215.7 240 50.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 9.7e-54 214.5 266 48.9
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 2.2e-53 213.4 150 68.7
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 8.2e-53 211.5 179 59.8
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.4e-52 209.9 218 55.5
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.4e-52 209.9 195 57.9
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.4e-52 209.9 173 61.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 3.1e-52 209.5 198 60.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 5.3e-52 208.8 264 47.3
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.7e-50 203.8 169 60.4
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 2.9e-50 203.0 238 49.2
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 5.2e-47 192.2 145 64.8
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.8e-47 191.4 233 49.4
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 8.8e-47 191.4 147 64.6
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 1.8e-44 183.7 133 65.4
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 1.2e-43 181.0 232 50.0
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 2.0e-43 180.3 134 61.9
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 4.2e-41 172.6 131 64.1
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.3e-39 166.8 192 47.4
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 6.8e-39 165.2 132 56.1
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 8.8e-39 164.9 232 44.8
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 2.0e-38 163.7 172 54.1
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.2e-37 160.2 134 56.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.8e-36 157.1 169 52.1
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.8e-36 157.1 156 54.5
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 3.1e-36 156.4 113 65.5
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.8e-34 149.4 163 52.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.4e-31 141.0 181 47.0
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.0e-30 137.1 135 54.1
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 4.5e-27 125.9 95 66.3
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.5e-25 120.2 101 64.4
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.6e-24 117.5 74 74.3
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 2.0e-19 100.5 124 48.4
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 4.6e-19 99.4 53 79.2
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.1e-17 94.7 156 38.5
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 4.3e-17 92.8 109 49.5
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 9.5e-17 91.7 59 74.6
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 4.9e-13 79.3 98 48.0
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.4e-13 79.0 54 70.4
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.2e-08 64.7 36 80.6
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 6.8e-07 58.9 128 33.6


User provided reference genes

Program Settings