Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 9.5e-59 230.3 150 100.0
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 1.3e-55 219.9 150 77.3
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.5e-40 168.3 149 63.8
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 5.6e-27 124.8 149 49.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.1e-21 106.3 148 54.1
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.6e-18 96.7 132 43.9
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 2.8e-18 95.9 151 39.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 8.2e-18 94.4 149 40.9
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 8.2e-18 94.4 148 40.5
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 6.9e-17 91.3 149 36.9
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 9.0e-17 90.9 150 42.0
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.5e-16 90.1 149 59.7
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 2.0e-16 89.7 150 47.3
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.0e-16 89.7 149 35.6
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.5e-16 88.6 149 39.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.5e-16 88.6 152 38.8
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 4.5e-16 88.6 149 37.6
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.9e-16 88.2 149 35.6
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 5.9e-16 88.2 149 51.7
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.0e-15 87.4 152 38.2
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.0e-15 87.4 150 42.7
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 1.3e-15 87.0 149 38.9
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.3e-15 87.0 149 56.4
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.7e-15 86.7 149 39.6
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.2e-15 86.3 148 37.8
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 2.2e-15 86.3 151 35.8
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 2.9e-15 85.9 150 38.7
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.9e-15 85.9 148 35.1
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 3.8e-15 85.5 149 51.7
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.8e-15 85.5 150 38.0
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 5.0e-15 85.1 150 39.3
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 5.0e-15 85.1 153 36.6
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 5.0e-15 85.1 153 36.6
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 5.0e-15 85.1 153 36.6
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 5.0e-15 85.1 151 35.8
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 5.0e-15 85.1 148 37.8
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 6.5e-15 84.7 148 37.8
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 6.5e-15 84.7 148 37.8
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 6.5e-15 84.7 151 35.1
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 6.5e-15 84.7 154 39.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.5e-15 84.3 148 37.2
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.1e-14 84.0 149 39.6
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.1e-14 84.0 149 36.9
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 1.4e-14 83.6 150 38.7
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.4e-14 83.6 153 36.6
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 2.5e-14 82.8 150 37.3
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 3.2e-14 82.4 149 38.9
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 3.2e-14 82.4 149 38.9
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 3.2e-14 82.4 150 36.7
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 4.2e-14 82.0 157 48.4
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 7.2e-14 81.3 162 38.9
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.3e-14 80.9 149 36.2
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-13 80.5 150 41.3
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.2e-13 80.5 149 34.2
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 2.1e-13 79.7 150 47.3
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.1e-13 79.7 150 37.3
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 2.7e-13 79.3 169 50.9
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 3.6e-13 79.0 82 51.2
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.6e-13 79.0 150 35.3
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 3.6e-13 79.0 149 36.2
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.6e-13 78.6 149 35.6
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 4.6e-13 78.6 151 33.8
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.6e-13 78.6 149 34.9
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.6e-13 78.6 149 35.6
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 4.6e-13 78.6 150 36.7
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 6.1e-13 78.2 150 38.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 6.1e-13 78.2 149 35.6
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 7.9e-13 77.8 150 35.3
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.9e-13 77.8 150 35.3
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 7.9e-13 77.8 149 35.6
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 7.9e-13 77.8 149 35.6
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.8e-12 76.6 150 36.0
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.8e-12 76.6 150 36.0
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 3.0e-12 75.9 149 36.2
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 3.9e-12 75.5 117 36.8
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 3.9e-12 75.5 150 50.0
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 5.1e-12 75.1 152 34.2
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 5.1e-12 75.1 149 35.6
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 5.1e-12 75.1 150 35.3
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 8.8e-12 74.3 150 36.0
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-11 73.9 87 49.4
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.5e-11 73.6 156 37.2
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.5e-11 73.6 147 35.4
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.5e-11 73.6 149 34.9
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-11 73.2 150 36.7
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.9e-11 73.2 150 36.7
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.9e-11 73.2 150 36.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 3.3e-11 72.4 127 36.2
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 3.3e-11 72.4 144 36.1
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 4.3e-11 72.0 152 34.9
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 5.7e-11 71.6 155 33.5
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 5.7e-11 71.6 131 41.2
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 7.4e-11 71.2 131 42.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 7.4e-11 71.2 150 33.3
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 9.7e-11 70.9 149 37.6
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 1.7e-10 70.1 156 32.1
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 2.8e-10 69.3 151 32.5
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 6.3e-10 68.2 150 50.0
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 6.3e-10 68.2 126 32.5
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 8.2e-10 67.8 150 34.0
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.2e-10 67.8 150 50.7
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 1.1e-09 67.4 100 41.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-09 67.0 151 35.8
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.4e-09 67.0 155 32.9
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.4e-09 66.2 150 44.0
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 5.3e-09 65.1 148 32.4
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 9.1e-09 64.3 149 35.6
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-08 63.5 87 43.7
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 2.0e-08 63.2 149 32.2
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 3.4e-08 62.4 149 31.5
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 5.9e-08 61.6 147 42.9
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 1.0e-07 60.8 143 32.2
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 1.3e-07 60.5 147 36.7
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.9e-07 59.3 150 32.0
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 6.5e-07 58.2 81 43.2
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.5e-07 57.8 81 48.1
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 1.1e-06 57.4 81 43.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.4e-06 57.0 150 35.3
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-06 57.0 148 46.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.4e-06 57.0 148 46.6
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-06 56.6 147 35.4
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.9e-06 56.6 147 35.4
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 1.9e-06 56.6 148 42.6
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 2.5e-06 56.2 80 46.2
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 3.2e-06 55.8 89 37.1
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 4.2e-06 55.5 148 39.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 4.2e-06 55.5 148 39.9
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 4.2e-06 55.5 100 36.0
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 7.2e-06 54.7 81 44.4
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 7.2e-06 54.7 146 31.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 9.4e-06 54.3 115 33.9


User provided reference genes

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