Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 3.8e-271 937.6 468 100.0
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.5e-246 855.1 554 81.4
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 4.6e-184 648.3 552 64.5
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 1.3e-178 630.2 543 62.4
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 2.2e-162 576.2 562 56.8
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.2e-144 517.3 564 53.0
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 5.1e-143 511.9 599 50.4
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 4.3e-142 508.8 561 53.1
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.3e-138 497.3 548 52.6
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 2.9e-138 496.1 565 50.3
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 1.9e-137 493.4 533 52.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 3.2e-137 492.7 529 53.9
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 5.5e-137 491.9 543 50.5
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 2.1e-136 490.0 533 51.8
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 1.8e-135 486.9 525 53.3
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 3.9e-135 485.7 553 49.5
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 8.8e-135 484.6 549 51.4
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 2.5e-134 483.0 556 51.1
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 9.7e-134 481.1 515 52.4
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 2.2e-133 479.9 597 48.7
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 4.8e-133 478.8 527 52.0
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 4.8e-133 478.8 534 50.4
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 4.8e-133 478.8 546 50.2
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 2.4e-132 476.5 568 49.8
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 4.1e-132 475.7 559 49.6
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 3.4e-131 472.6 539 50.1
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 1.3e-130 470.7 578 48.6
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 1.1e-129 467.6 520 51.0
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 1.2e-128 464.2 526 51.1
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 1.4e-127 460.7 587 48.2
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.3e-127 459.9 515 50.9
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 3.9e-127 459.1 553 49.0
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 1.1e-126 457.6 528 49.6
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 3.3e-126 456.1 540 49.1
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 4.4e-126 455.7 522 49.8
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 7.4e-126 454.9 536 49.6
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 2.2e-125 453.4 567 47.4
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 2.8e-125 453.0 585 47.2
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 3.7e-125 452.6 595 47.4
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 6.3e-125 451.8 554 48.4
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.1e-124 451.1 517 50.3
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 1.8e-124 450.3 522 50.6
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 3.5e-123 446.0 569 48.2
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 1.0e-122 444.5 504 50.4
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.3e-122 444.1 517 49.5
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.2e-122 443.4 517 49.5
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 2.2e-122 443.4 513 49.5
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 8.5e-122 441.4 517 49.5
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 1.9e-121 440.3 543 48.4
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.1e-118 431.0 517 48.2
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 1.2e-115 421.0 552 45.7
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 2.0e-115 420.2 572 45.5
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 2.6e-115 419.9 564 45.4
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 1.3e-114 417.5 529 47.6
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.7e-114 417.2 572 45.5
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 2.9e-114 416.4 533 47.3
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 1.9e-113 413.7 518 46.9
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 4.2e-113 412.5 523 48.0
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 5.5e-113 412.1 535 46.9
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.2e-112 411.0 533 46.5
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 4.7e-112 409.1 520 46.7
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.4e-111 407.5 532 46.4
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 1.8e-111 407.1 527 45.9
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.8e-111 407.1 528 46.4
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 4.0e-111 406.0 528 46.6
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 5.2e-111 405.6 537 45.8
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 6.8e-111 405.2 534 45.9
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 6.8e-111 405.2 534 45.9
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-110 404.4 521 46.6
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 1.2e-110 404.4 524 46.0
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.5e-110 404.1 567 44.8
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 2.6e-110 403.3 530 45.3
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.7e-109 400.6 521 46.6
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 2.2e-109 400.2 536 45.7
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 2.2e-109 400.2 525 45.5
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 2.2e-109 400.2 511 46.8
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 3.7e-109 399.4 564 43.3
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 3.7e-109 399.4 531 45.2
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 3.7e-109 399.4 531 45.2
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 6.3e-109 398.7 523 45.7
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 6.3e-109 398.7 533 46.0
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 8.3e-109 398.3 531 45.4
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.1e-108 397.9 554 44.6
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 4.1e-108 396.0 521 45.9
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 5.4e-108 395.6 542 44.5
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 2.0e-107 393.7 539 44.2
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 3.5e-107 392.9 476 48.3
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 4.5e-107 392.5 531 45.2
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 5.9e-107 392.1 536 44.6
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 1.3e-106 391.0 452 50.0
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.3e-106 391.0 527 46.5
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 2.9e-106 389.8 523 44.9
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 3.8e-106 389.4 527 44.6
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 1.9e-105 387.1 517 45.5
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 5.5e-105 385.6 540 43.9
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 2.1e-104 383.6 522 43.9
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 2.7e-104 383.3 513 45.4
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 2.7e-104 383.3 511 44.0
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 4.7e-104 382.5 451 49.0
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 6.1e-104 382.1 330 61.2
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 6.1e-104 382.1 511 44.0
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 8.0e-104 381.7 492 46.7
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-103 381.3 515 45.0
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.4e-103 380.9 454 48.2
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 1.8e-103 380.6 523 44.4
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 2.3e-103 380.2 520 43.7
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 5.2e-103 379.0 515 44.5
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 2.2e-101 373.6 524 44.1
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 6.3e-101 372.1 511 44.2
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.4e-100 370.9 462 48.1
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 2.4e-100 370.2 534 43.6
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 2.0e-99 367.1 531 45.0
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 5.9e-99 365.5 332 58.1
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.3e-98 363.6 520 44.4
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.0e-95 354.8 570 41.9
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 8.9e-95 351.7 455 47.0
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.8e-92 344.0 559 42.0
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 7.0e-92 342.0 444 45.7
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 2.7e-91 340.1 350 54.3
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.2e-88 331.3 405 46.4
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 4.7e-88 329.3 531 40.5
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 2.3e-87 327.0 355 53.8
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 1.7e-85 320.9 320 54.1
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 1.2e-78 298.1 484 40.1
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 6.4e-69 265.8 551 35.2
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 2.1e-67 260.8 208 64.4
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 6.0e-67 259.2 566 32.7
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.5e-65 254.6 411 40.6
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 2.0e-62 244.2 385 39.7
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.7e-61 241.1 539 33.2
TAR622G0519 Trochodendron aralioides HOM05D003553 ORTHO05D005072 3.2e-60 236.9 331 43.5
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 6.0e-59 232.6 482 34.6
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 2.2e-53 214.2 550 30.2
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 8.4e-53 212.2 198 59.1
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 1.9e-44 184.5 170 57.1
HPP92_007667 Vanilla planifolia HOM05D003553 ORTHO05D005072 6.7e-42 176.0 353 36.5
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 3.3e-41 173.7 132 69.7
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 4.8e-40 169.9 316 35.1
SEGI_27806 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 4.2e-36 156.8 424 27.4
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 7.1e-36 156.0 249 40.2
Sc23g0004630 Simmondsia chinensis HOM05D003553 ORTHO05D005072 2.1e-35 154.5 121 63.6
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 3.3e-33 147.1 274 35.4
Os09g0361500 Oryza sativa ssp. japonica HOM05D003553 ORTHO05D005072 1.8e-31 141.4 332 30.7
TPR.G24814 Trifolium pratense HOM05D003553 ORTHO05D005072 1.0e-29 135.6 130 54.6
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 4.2e-28 130.2 304 32.9
FAN04G2395 Fragaria x ananassa HOM05D003553 ORTHO05D005072 6.1e-27 126.3 103 65.0
BolC8t48344H Brassica oleracea HOM05D003553 ORTHO05D027688 8.7e-26 122.5 102 55.9
TPR.G5572 Trifolium pratense HOM05D003553 ORTHO05D005072 8.7e-26 122.5 104 63.5
MELO3C029757.2 Cucumis melo HOM05D003553 ORTHO05D005072 4.8e-24 116.7 102 60.8
TPR.G10903 Trifolium pratense HOM05D003553 ORTHO05D005072 2.4e-23 114.4 82 69.5
BcaC08g46921 Brassica carinata HOM05D003553 ORTHO05D005072 3.1e-23 114.0 108 55.6
C06p06430 Brassica napus HOM05D003553 ORTHO05D027688 1.4e-20 105.1 280 30.7
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.2e-20 104.0 105 54.3
BcaB01g02747 Brassica carinata HOM05D003553 ORTHO05D039541 1.6e-19 101.7 173 37.6
BcaNung05961 Brassica carinata HOM05D003553 ORTHO05D005072 2.1e-19 101.3 126 46.0
BcaC08g43294 Brassica carinata HOM05D003553 ORTHO05D027688 2.7e-19 100.9 135 43.7
BcaC06g34281 Brassica carinata HOM05D003553 ORTHO05D027688 5.1e-18 96.7 111 45.9
TPR.G5641 Trifolium pratense HOM05D003553 ORTHO05D005072 2.2e-16 91.3 96 49.0
MD14G1195500 Malus domestica HOM05D003553 ORTHO05D005072 2.6e-14 84.3 138 43.5
MD14G1195300 Malus domestica HOM05D003553 ORTHO05D005072 4.5e-14 83.6 71 63.4
A06p09090 Brassica napus HOM05D003553 ORTHO05D005072 7.7e-14 82.8 116 46.6
BcaB08g35674 Brassica carinata HOM05D003553 ORTHO05D005072 3.8e-13 80.5 115 40.9
BcaB05g24627 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-12 78.6 113 40.7
SEGI_10147 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 1.4e-12 78.6 274 23.4
Sc23g0004640 Simmondsia chinensis HOM05D003553 ORTHO05D005072 4.7e-11 73.6 48 72.9
BcaC07g41285 Brassica carinata HOM05D003553 ORTHO05D005072 1.5e-09 68.6 46 71.7
C08p42930 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-09 68.6 46 71.7
TPR.G18770 Trifolium pratense HOM05D000974 ORTHO05D002201 3.3e-09 67.4 61 50.8
BolC8t51848H Brassica oleracea HOM05D003553 ORTHO05D005072 5.7e-09 66.6 46 69.6
Cfa009500 Carpinus fangiana HOM05D002033 ORTHO05D002181 5.7e-09 66.6 203 28.6
COL.COLO4_05912 Corchorus olitorius HOM05D003553 ORTHO05D026445 5.7e-09 66.6 94 41.5
AL1G31410 Arabidopsis lyrata HOM05D003553 ORTHO05D026445 4.8e-08 63.5 58 55.2
BcaC08g46896 Brassica carinata HOM05D003553 ORTHO05D026445 4.8e-08 63.5 58 53.4
CARHR035090 Cardamine hirsuta HOM05D003553 ORTHO05D040806 8.2e-08 62.8 52 53.8
Aa31LG9G8980 Aethionema arabicum HOM05D003553 ORTHO05D026445 4.1e-07 60.5 68 47.1
BcaC01g03013 Brassica carinata HOM05D003553 ORTHO05D039244 9.1e-07 59.3 116 37.9
A09p59630 Brassica napus HOM05D003553 ORTHO05D005072 3.5e-06 57.4 48 60.4


User provided reference genes

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