Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 6.6e-51 203.8 104 100.0
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.4e-37 158.7 115 75.7
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 5.7e-26 120.9 137 51.1
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 5.7e-26 120.9 140 50.0
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 2.9e-22 108.6 138 45.7
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 1.7e-14 82.8 150 39.3
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.7e-14 82.8 145 37.9
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.9e-13 79.3 147 35.4
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.9e-13 79.3 154 33.8
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 1.9e-13 79.3 145 34.5
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.9e-13 79.3 153 37.3
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 2.5e-13 79.0 158 34.8
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 3.2e-13 78.6 151 37.1
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 5.5e-13 77.8 75 50.7
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 7.2e-13 77.4 153 35.3
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 7.2e-13 77.4 143 37.8
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.2e-12 76.6 154 37.0
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 2.1e-12 75.9 77 48.1
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 2.1e-12 75.9 144 36.8
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 2.1e-12 75.9 141 36.2
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 2.1e-12 75.9 107 45.8
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 6.1e-12 74.3 156 34.6
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 6.1e-12 74.3 144 34.7
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 6.1e-12 74.3 96 49.0
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.8e-11 72.8 152 34.9
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 2.3e-11 72.4 107 43.0
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 2.3e-11 72.4 141 36.2
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.3e-11 72.4 76 51.3
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 3.0e-11 72.0 77 45.5
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 3.0e-11 72.0 75 50.7
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 3.9e-11 71.6 77 45.5
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 3.9e-11 71.6 66 57.6
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 3.9e-11 71.6 75 50.7
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 3.9e-11 71.6 141 36.9
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 3.9e-11 71.6 147 34.0
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 3.9e-11 71.6 144 34.0
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 1.1e-10 70.1 152 33.6
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 4.3e-10 68.2 146 37.0
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 5.7e-10 67.8 147 33.3
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 7.4e-10 67.4 141 33.3
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 9.7e-10 67.0 137 37.2
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 1.7e-09 66.2 151 34.4
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 1.7e-09 66.2 102 38.2
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 1.7e-09 66.2 150 36.7
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.7e-09 66.2 76 48.7
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 1.7e-09 66.2 143 35.0
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.2e-09 65.9 139 32.4
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 2.2e-09 65.9 76 44.7
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.2e-09 65.9 67 49.3
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 2.8e-09 65.5 143 35.0
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 2.8e-09 65.5 143 35.0
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.8e-09 65.5 67 47.8
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.8e-09 65.5 67 49.3
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 2.8e-09 65.5 75 46.7
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 3.7e-09 65.1 63 46.0
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.7e-09 65.1 145 31.0
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 4.8e-09 64.7 75 49.3
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 4.8e-09 64.7 75 46.7
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 6.3e-09 64.3 143 34.3
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 6.3e-09 64.3 143 32.2
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 6.3e-09 64.3 96 42.7
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 6.3e-09 64.3 141 33.3
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 8.2e-09 63.9 144 34.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 8.2e-09 63.9 65 46.2
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.1e-08 63.5 67 46.3
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.1e-08 63.5 66 50.0
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.4e-08 63.2 64 48.4
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.8e-08 62.8 68 47.1
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.8e-08 62.8 145 30.3
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.8e-08 62.8 145 30.3
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 3.1e-08 62.0 138 31.2
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 4.1e-08 61.6 134 35.1
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 5.3e-08 61.2 139 30.2
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 5.3e-08 61.2 142 31.7
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 6.9e-08 60.8 64 46.9
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 9.1e-08 60.5 79 44.3
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 9.1e-08 60.5 152 31.6
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 9.1e-08 60.5 125 35.2
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 1.2e-07 60.1 139 30.9
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 1.2e-07 60.1 52 55.8
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 1.2e-07 60.1 50 58.0
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 1.5e-07 59.7 64 53.1
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.5e-07 59.7 146 33.6
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 1.5e-07 59.7 141 33.3
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 2.0e-07 59.3 138 30.4
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 3.4e-07 58.5 76 48.7
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 3.4e-07 58.5 135 33.3
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 3.4e-07 58.5 124 34.7
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 5.9e-07 57.8 139 31.7
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 7.7e-07 57.4 155 29.7
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 7.7e-07 57.4 139 31.7
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 1.7e-06 56.2 67 46.3
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.8e-06 55.1 67 43.3
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 5.0e-06 54.7 69 44.9
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 8.5e-06 53.9 129 31.0
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 8.5e-06 53.9 63 44.4
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 8.5e-06 53.9 67 46.3
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 8.5e-06 53.9 106 37.7


User provided reference genes

Program Settings