Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.8e-127 457.6 235 100.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.1e-108 396.0 215 95.3
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 5.4e-93 344.7 229 78.6
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 1.2e-87 327.0 241 73.0
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 8.7e-67 257.7 213 58.2
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 1.9e-66 256.5 234 58.1
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 3.3e-66 255.8 224 60.3
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 7.4e-66 254.6 232 57.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.4e-66 254.6 212 60.4
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 2.8e-65 252.7 229 60.3
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.7e-65 252.3 229 59.0
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 4.8e-65 251.9 231 58.0
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 8.2e-65 251.1 205 61.0
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.1e-64 250.8 203 61.1
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.4e-64 250.4 233 57.9
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 1.8e-64 250.0 216 58.8
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 1.8e-64 250.0 216 58.8
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 1.8e-64 250.0 231 58.4
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.8e-64 250.0 233 57.9
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.4e-64 249.6 207 58.5
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.1e-64 248.8 237 56.1
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 6.9e-64 248.1 234 55.1
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 9.0e-64 247.7 226 56.2
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 9.0e-64 247.7 226 56.2
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.5e-63 246.9 235 54.9
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 1.5e-63 246.9 234 54.7
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 1.5e-63 246.9 229 56.3
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 2.0e-63 246.5 226 56.2
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 2.0e-63 246.5 226 56.2
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 2.6e-63 246.1 185 63.2
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 2.6e-63 246.1 232 57.3
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.6e-63 246.1 226 56.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 2.6e-63 246.1 226 56.2
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 3.4e-63 245.7 226 56.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 3.4e-63 245.7 226 57.5
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 3.4e-63 245.7 226 57.5
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 3.4e-63 245.7 220 60.5
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 3.4e-63 245.7 239 55.2
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 4.5e-63 245.4 213 61.5
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 4.5e-63 245.4 233 55.8
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 4.5e-63 245.4 225 56.4
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 5.9e-63 245.0 226 57.1
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 5.9e-63 245.0 213 57.7
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 7.7e-63 244.6 230 56.5
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 7.7e-63 244.6 227 56.4
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 7.7e-63 244.6 235 55.3
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.0e-62 244.2 186 62.4
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.0e-62 244.2 231 52.4
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 1.0e-62 244.2 233 56.2
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 1.3e-62 243.8 226 56.2
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-62 243.4 217 57.6
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.7e-62 243.4 234 53.8
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 2.2e-62 243.0 203 58.6
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 2.9e-62 242.7 229 55.5
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.9e-62 242.7 213 57.7
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 3.8e-62 242.3 216 56.9
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 5.0e-62 241.9 230 56.5
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.0e-62 241.9 215 58.6
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 6.5e-62 241.5 183 63.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 6.5e-62 241.5 231 56.3
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 6.5e-62 241.5 224 56.2
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 6.5e-62 241.5 234 54.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.5e-62 241.1 225 56.4
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 8.5e-62 241.1 179 64.8
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.5e-62 241.1 185 63.8
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.1e-61 240.7 203 59.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 1.1e-61 240.7 233 54.1
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 2.5e-61 239.6 233 54.1
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 5.5e-61 238.4 177 63.3
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 5.5e-61 238.4 221 57.0
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 9.4e-61 237.7 179 64.2
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 174 63.8
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 1.2e-60 237.3 234 52.1
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.2e-60 237.3 233 53.6
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 1.6e-60 236.9 230 53.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.1e-60 236.5 241 54.4
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 2.1e-60 236.5 241 54.4
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 2.1e-60 236.5 224 54.5
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.1e-60 236.5 226 54.4
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.6e-60 235.3 177 63.8
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 7.9e-60 234.6 206 54.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 1.8e-59 233.4 233 52.8
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 1.8e-59 233.4 214 55.6
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 1.8e-59 233.4 243 51.0
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 2.3e-59 233.0 188 59.6
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 5.1e-59 231.9 214 56.1
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 6.7e-59 231.5 199 55.8
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-58 230.3 196 56.6
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 1.5e-58 230.3 205 56.1
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 2.0e-58 229.9 222 52.7
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 2.0e-58 229.9 235 51.5
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 2.0e-58 229.9 205 56.1
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 4.3e-58 228.8 231 50.6
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 7.4e-58 228.0 234 53.0
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 2.2e-57 226.5 207 55.1
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 2.8e-57 226.1 235 51.9
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.7e-57 225.7 241 51.9
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 4.8e-57 225.3 233 49.8
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 4.8e-57 225.3 205 53.7
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 6.3e-57 224.9 234 52.1
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 6.3e-57 224.9 232 52.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 8.2e-57 224.6 234 52.6
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.4e-56 223.8 222 51.4
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 1.8e-56 223.4 234 51.7
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 1.8e-56 223.4 208 54.3
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.4e-56 223.0 208 54.3
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 4.1e-56 222.2 234 52.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 9.1e-56 221.1 187 57.2
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.5e-55 220.3 233 51.9
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 1.5e-55 220.3 174 60.9
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 2.6e-55 219.5 242 50.4
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.4e-55 219.2 243 49.8
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 3.4e-55 219.2 195 54.4
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 5.9e-55 218.4 177 59.9
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 7.7e-55 218.0 152 69.1
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 7.7e-55 218.0 171 62.0
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 1.3e-54 217.2 162 62.3
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.3e-54 217.2 235 50.6
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.3e-54 217.2 231 51.9
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 1.7e-54 216.9 222 52.3
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 2.2e-54 216.5 167 59.9
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 2.5e-53 213.0 232 49.6
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 4.2e-53 212.2 243 48.1
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 4.2e-53 212.2 232 48.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 1.6e-52 210.3 173 54.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 1.6e-52 210.3 234 50.0
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 2.1e-52 209.9 208 54.3
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 2.1e-52 209.9 239 49.0
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 7.9e-52 208.0 234 48.3
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 1.8e-51 206.8 172 58.7
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.3e-50 202.6 146 63.7
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 9.7e-50 201.1 226 49.1
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-49 200.3 163 58.3
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 8.2e-49 198.0 195 53.8
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 2.4e-48 196.4 210 50.0
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 9.1e-48 194.5 241 46.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 7.7e-47 191.4 209 49.8
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 5.0e-46 188.7 164 61.6
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 4.0e-43 179.1 164 56.7
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.7e-41 173.7 191 50.3
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.2e-41 171.4 132 59.1
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.2e-37 159.5 146 56.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.4e-35 154.1 111 65.8
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 4.0e-35 152.5 232 39.7
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 2.9e-30 136.3 175 38.9
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 6.5e-30 135.2 161 42.9
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 4.7e-28 129.0 106 54.7
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 6.1e-28 128.6 169 40.2
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 5.7e-26 122.1 150 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 1.7e-25 120.6 235 34.5
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 8.6e-22 108.2 76 63.2
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 5.4e-16 89.0 171 34.5
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 1.0e-14 84.7 86 51.2
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 4.0e-11 72.8 75 54.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.5e-10 70.9 71 45.1


User provided reference genes

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