Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1790.4 905 100.0
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 0.0e+00 1573.9 903 89.4
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 0.0e+00 1493.8 935 81.4
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1364.7 912 76.5
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 0.0e+00 1334.7 935 72.6
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 0.0e+00 1327.8 933 72.0
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 0.0e+00 1322.8 936 71.8
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 0.0e+00 1321.2 936 71.7
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 0.0e+00 1317.4 937 72.5
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 0.0e+00 1316.6 933 71.6
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1300.0 933 70.5
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 0.0e+00 1297.3 933 70.5
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 0.0e+00 1297.0 933 70.6
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1294.6 910 72.2
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 0.0e+00 1291.6 934 70.6
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 0.0e+00 1289.6 952 70.3
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 0.0e+00 1287.3 936 69.8
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 0.0e+00 1286.9 934 71.6
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1286.6 928 71.3
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 0.0e+00 1285.8 936 69.7
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 0.0e+00 1284.2 936 70.1
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 0.0e+00 1283.5 936 70.3
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 0.0e+00 1283.5 933 70.2
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1282.7 936 70.1
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 0.0e+00 1281.2 936 69.9
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 0.0e+00 1281.2 923 71.3
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 0.0e+00 1276.9 936 71.0
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 0.0e+00 1273.8 929 70.7
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 0.0e+00 1273.1 936 69.2
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 0.0e+00 1268.8 933 69.2
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1267.7 936 69.6
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 0.0e+00 1267.7 936 69.6
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 0.0e+00 1265.8 935 70.2
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 0.0e+00 1265.4 934 69.5
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 0.0e+00 1264.6 906 72.4
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 0.0e+00 1263.1 936 69.6
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 0.0e+00 1260.0 918 70.9
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 0.0e+00 1258.4 934 69.5
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 0.0e+00 1253.4 936 68.7
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 0.0e+00 1251.9 975 67.2
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 0.0e+00 1250.0 937 68.3
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 0.0e+00 1248.8 937 68.8
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 0.0e+00 1243.0 946 68.4
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 0.0e+00 1243.0 937 68.0
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 0.0e+00 1241.9 937 68.0
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 0.0e+00 1238.4 933 68.4
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 0.0e+00 1238.0 937 67.4
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 0.0e+00 1237.2 931 69.4
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 0.0e+00 1231.1 937 67.7
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 0.0e+00 1229.5 937 67.1
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 0.0e+00 1228.8 937 67.1
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 0.0e+00 1228.0 941 67.2
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 0.0e+00 1226.8 937 66.8
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 0.0e+00 1226.5 937 67.1
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 0.0e+00 1224.5 936 67.4
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1224.2 940 66.9
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 0.0e+00 1223.0 937 66.6
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 0.0e+00 1221.8 940 66.9
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 0.0e+00 1221.8 939 66.9
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 0.0e+00 1221.5 939 66.9
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1221.1 940 66.3
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 0.0e+00 1218.8 939 67.0
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 0.0e+00 1213.4 938 66.4
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1207.6 938 67.5
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 0.0e+00 1204.9 935 67.2
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 0.0e+00 1203.0 982 64.2
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 0.0e+00 1199.1 909 68.4
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 0.0e+00 1198.7 935 65.5
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 0.0e+00 1196.8 858 71.9
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 0.0e+00 1187.6 984 64.1
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1186.4 929 66.5
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 0.0e+00 1175.2 937 66.1
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1174.5 945 65.3
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 0.0e+00 1135.2 908 63.9
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 0.0e+00 1129.8 901 65.9
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1123.2 929 64.0
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 0.0e+00 1120.1 929 64.0
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 0.0e+00 1100.9 936 62.5
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 0.0e+00 1091.3 890 63.6
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 0.0e+00 1087.4 866 63.7
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 0.0e+00 1085.1 936 62.5
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.3e-296 1023.1 752 66.6
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 1.6e-273 946.4 906 53.8
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 3.2e-266 922.2 916 52.3
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 1.1e-263 913.7 749 66.1
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 4.7e-262 908.3 719 63.4
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 3.1e-261 905.6 712 64.7
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 2.8e-246 855.9 910 51.6
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 7.1e-234 814.7 702 61.8
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 3.3e-231 805.8 651 65.9
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 1.3e-227 793.9 579 67.2
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.5e-226 789.6 916 46.9
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 8.8e-216 754.6 610 63.0
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.6e-209 732.6 639 61.5
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 4.8e-206 722.2 739 53.6
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 1.2e-196 691.0 657 57.4
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.6e-196 690.6 486 68.3
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 1.2e-191 674.5 938 43.9
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 5.0e-187 659.1 397 79.1
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 2.7e-172 610.1 559 60.1
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 6.0e-172 609.0 511 64.0
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.4e-152 544.7 339 76.1
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 8.7e-139 498.8 949 36.4
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 1.1e-138 498.4 300 77.7
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 2.5e-138 497.3 405 62.2
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.9e-122 444.5 938 32.7
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 6.9e-112 409.5 417 56.6
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 2.3e-99 367.9 306 58.5
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 2.0e-79 301.6 223 68.2
RcHm_v2.0_Chr7g0219561 Rosa chinensis HOM05D005389 ORTHO05D008484 1.6e-76 292.0 242 69.0
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 2.5e-53 214.9 213 55.4
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 4.3e-53 214.2 108 88.0
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.8e-35 155.6 111 71.2
Peaxi162Scf00129g00823 Petunia axillaris HOM05D005389 ORTHO05D008484 3.5e-31 141.4 88 87.5
TPR.G17640 Trifolium pratense HOM05D005389 ORTHO05D008484 1.3e-30 139.4 83 92.8
RcHm_v2.0_Chr7g0219531 Rosa chinensis HOM05D005389 ORTHO05D008484 1.2e-26 126.3 139 56.8
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.4e-24 117.5 67 82.1
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.4e-24 117.5 67 82.1
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 9.3e-24 116.7 83 69.9
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-23 116.3 67 82.1
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-23 116.3 67 82.1
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.2e-23 116.3 67 82.1
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.7e-23 115.2 67 80.6
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 4.6e-23 114.4 67 77.6
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.0e-22 113.2 67 80.6
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.7e-22 112.5 67 80.6
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 3.9e-22 111.3 67 77.6
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.4e-19 102.8 71 67.6
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.8e-19 102.4 77 66.2
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 1.8e-19 102.4 77 66.2
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 6.9e-19 100.5 83 61.4
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 9.0e-19 100.1 85 64.7
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 8.4e-17 93.6 77 61.0
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.4e-11 76.3 74 50.0
Gohir.D08G122632 Gossypium hirsutum HOM05D005389 ORTHO05D048184 3.1e-11 75.1 58 58.6
Gorai.001G214100 Gossypium raimondii HOM05D005389 ORTHO05D048184 5.3e-11 74.3 58 58.6
Gorai.010G120100 Gossypium raimondii HOM05D005389 ORTHO05D047357 1.5e-10 72.8 58 56.9
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.0e-09 70.1 323 24.5
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 1.9e-08 65.9 35 85.7
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 2.5e-08 65.5 39 87.2
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 2.5e-08 65.5 39 87.2


User provided reference genes

Program Settings