Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 0.0e+00 1380.9 745 100.0
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 6.4e-305 1050.4 752 74.6
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 3.5e-279 964.9 711 72.3
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 3.4e-258 895.2 528 88.3
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 2.5e-245 852.4 753 63.6
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 4.5e-226 788.5 756 60.4
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 2.8e-212 742.7 745 56.2
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 5.2e-198 695.3 736 53.4
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.5e-197 693.7 742 53.8
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.3e-196 690.6 717 54.5
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 8.3e-196 688.0 717 54.4
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 1.4e-195 687.2 640 59.5
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 1.8e-195 686.8 734 54.5
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 4.1e-195 685.6 718 55.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.6e-194 683.7 675 57.2
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 4.6e-194 682.2 667 58.3
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 4.6e-194 682.2 735 55.2
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 5.0e-193 678.7 745 54.2
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 5.0e-193 678.7 664 56.5
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 6.6e-193 678.3 635 60.0
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 8.6e-193 677.9 668 56.6
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 1.1e-192 677.6 666 56.6
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 5.6e-192 675.2 768 51.8
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 9.5e-192 674.5 669 56.2
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.2e-191 674.1 660 57.3
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 2.3e-190 669.8 746 53.5
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 6.8e-190 668.3 746 53.1
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 2.6e-189 666.4 735 53.5
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 4.4e-189 665.6 736 53.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.3e-188 664.1 725 52.8
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.7e-188 663.7 727 53.9
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 3.7e-188 662.5 693 54.3
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 6.4e-188 661.8 671 56.5
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 6.4e-188 661.8 743 51.5
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.3e-188 661.4 642 58.9
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.9e-187 660.2 608 59.9
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 7.0e-187 658.3 670 55.2
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.7e-186 656.4 732 53.4
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.3e-185 654.1 777 50.7
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.7e-185 653.7 742 53.2
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 3.9e-185 652.5 716 54.3
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.9e-185 652.5 731 51.7
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 5.0e-185 652.1 718 52.8
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.5e-184 650.6 721 52.3
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 6.2e-183 645.2 641 56.3
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.8e-182 643.7 607 58.6
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.8e-182 643.7 708 52.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.8e-182 643.7 658 55.8
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 8.9e-182 641.3 657 56.2
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.5e-181 640.6 686 53.8
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 4.4e-181 639.0 766 50.9
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.7e-180 637.1 688 52.0
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 4.1e-179 632.5 740 49.9
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.1e-179 632.5 744 50.8
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 7.8e-178 628.2 723 50.9
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 3.9e-177 625.9 631 55.9
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.9e-176 623.6 589 57.4
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 5.6e-176 622.1 745 50.1
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 1.2e-175 620.9 745 50.3
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.1e-174 617.8 644 54.5
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.4e-174 617.5 661 53.4
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 5.2e-174 615.5 660 53.6
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 6.8e-174 615.1 648 54.5
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 8.9e-174 614.8 660 53.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 1.2e-173 614.4 679 52.1
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.2e-173 614.4 721 52.0
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.4e-171 607.4 693 51.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.5e-170 602.8 717 49.5
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.3e-169 600.9 704 50.3
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 3.0e-169 599.7 549 57.9
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.9e-168 597.0 663 52.5
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.3e-168 595.9 666 51.7
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 4.3e-168 595.9 618 53.2
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 4.7e-167 592.4 638 52.2
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 6.9e-166 588.6 630 52.5
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 1.5e-165 587.4 659 51.6
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.4e-163 580.9 627 53.1
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 2.4e-163 580.1 652 52.1
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 7.1e-163 578.6 639 51.3
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 2.7e-162 576.6 636 51.3
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 4.6e-162 575.9 638 50.3
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.0e-161 574.7 640 50.6
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 4.3e-160 569.3 618 52.3
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 9.6e-160 568.2 633 51.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 6.2e-159 565.5 632 50.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 6.9e-158 562.0 628 50.8
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.2e-157 561.2 744 46.9
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 4.5e-157 559.3 667 51.6
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.7e-156 557.4 456 61.6
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 1.1e-155 554.7 626 50.6
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 2.1e-154 550.4 649 48.8
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.0e-153 548.1 634 50.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 5.7e-136 489.2 496 54.6
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 6.5e-132 475.7 421 60.6
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.4e-129 468.0 481 52.8
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 2.0e-125 454.1 676 41.7
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 3.8e-124 449.9 488 54.5
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 5.3e-110 402.9 648 38.3
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 7.0e-110 402.5 682 42.5
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 6.5e-108 396.0 221 95.0
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 1.1e-107 395.2 673 38.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.8e-102 377.9 742 35.8
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.2e-98 365.2 597 42.7
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 2.7e-93 347.4 403 46.4
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 4.5e-85 320.1 478 45.2
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.4e-78 297.7 804 30.6
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 6.2e-74 283.1 387 46.8
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 9.2e-62 242.7 716 30.9
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-54 219.2 428 38.3
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.5e-48 198.7 317 42.0
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.2e-47 194.9 247 47.4
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 2.1e-42 178.3 199 50.8
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.3e-39 169.1 181 52.5
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 1.2e-37 162.5 722 24.2
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.1e-34 151.8 637 25.1
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 7.4e-27 126.7 109 63.3
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-26 125.9 144 52.1
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 6.1e-21 107.1 180 43.9
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 7.9e-21 106.7 94 59.6
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.4e-17 95.9 105 54.3
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 1.8e-17 95.5 147 49.0
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 8.5e-15 86.7 96 59.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 5.5e-14 84.0 99 45.5
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.1e-12 77.4 175 30.3
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 5.7e-11 73.9 97 46.4
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.8e-09 68.9 79 54.4
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 1.3e-07 62.8 97 38.1
HanXRQChr11g0346841 Helianthus annuus HOM05D000463 ORTHO05D001294 8.5e-07 60.1 83 34.9
VMungo1080G0279 Vigna mungo HOM05D000463 ORTHO05D001294 8.5e-07 60.1 128 28.9
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.9e-06 58.9 114 43.0
Sabra19G0111000 Salix brachista HOM05D000463 ORTHO05D001294 3.2e-06 58.2 138 25.4
Sabra19G0112300 Salix brachista HOM05D000463 ORTHO05D001294 3.2e-06 58.2 138 25.4
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 4.2e-06 57.8 68 33.8
Nitab4.5_0001551g0050 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.8 72 36.1
MELO3C013615.2 Cucumis melo HOM05D000463 ORTHO05D001294 5.5e-06 57.4 70 37.1
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 65 36.9
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 5.5e-06 57.4 93 32.3
MSTRG.6838 Avicennia marina HOM05D000463 ORTHO05D001294 9.4e-06 56.6 65 33.8
CDE05G3599 Ceratophyllum demersum HOM05D000463 ORTHO05D001294 9.4e-06 56.6 67 35.8
Ca_01503_v3 Cicer arietinum L. HOM05D000463 ORTHO05D001294 9.4e-06 56.6 80 33.8
CsaV3_6G012970 Cucumis sativus L. HOM05D000463 ORTHO05D001294 9.4e-06 56.6 70 37.1
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 9.4e-06 56.6 93 33.3


User provided reference genes

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