Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037721 Chenopodium quinoa HOM05D005991 ORTHO05D007408 5.9e-101 370.9 197 100.0
AUR62020284 Chenopodium quinoa HOM05D005991 ORTHO05D007408 1.6e-93 346.3 194 94.3
EL10Ac2g02410 Beta vulgaris HOM05D005991 ORTHO05D007408 9.6e-67 257.3 253 60.1
Dinv05101 Davidia involucrata HOM05D005991 ORTHO05D007408 3.2e-54 215.7 253 53.4
Actinidia28298 Actinidia chinensis HOM05D005991 ORTHO05D007408 1.0e-52 210.7 251 53.4
Ah.11g042100 Amaranthus hybridus HOM05D005991 ORTHO05D007408 1.1e-51 207.2 254 53.9
Sc23g0006090 Simmondsia chinensis HOM05D005991 ORTHO05D007408 6.2e-50 201.4 258 52.3
TAR633G0953 Trochodendron aralioides HOM05D005991 ORTHO05D007408 5.3e-49 198.4 248 51.6
Nn3g21864 Nelumbo nucifera HOM05D005991 ORTHO05D007408 3.4e-48 195.7 248 50.4
MSTRG.22639 Avicennia marina HOM05D005991 ORTHO05D007408 1.3e-47 193.7 255 50.2
CSS0003210 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 1.7e-47 193.4 258 47.7
ClCG06G004330 Citrullus lanatus HOM05D005991 ORTHO05D007408 2.9e-47 192.6 247 50.2
GSVIVG01017637001 Vitis vinifera HOM05D005991 ORTHO05D007408 2.9e-47 192.6 256 48.4
TAR362G0621 Trochodendron aralioides HOM05D005991 ORTHO05D007408 3.8e-47 192.2 245 51.4
Oeu009727.1 Olea europaea HOM05D005991 ORTHO05D007408 8.4e-47 191.0 259 48.3
unitig_32.g11589 Utricularia gibba HOM05D005991 ORTHO05D007408 8.4e-47 191.0 235 52.8
MBI18_g36460_MAGBIO Magnolia biondii HOM05D005991 ORTHO05D007408 1.1e-46 190.7 241 49.0
DCAR_019078 Daucus carota HOM05D005991 ORTHO05D007408 1.4e-46 190.3 250 48.8
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 1.9e-46 189.9 248 50.0
PGR004G0142 Punica granatum HOM05D005991 ORTHO05D007408 2.5e-46 189.5 226 52.2
Sed0009947 Sechium edule HOM05D005991 ORTHO05D007408 3.2e-46 189.1 250 49.6
Cfa015696 Carpinus fangiana HOM05D005991 ORTHO05D007408 4.2e-46 188.7 255 48.2
Cc10_g13510 Coffea canephora HOM05D005991 ORTHO05D007408 5.5e-46 188.3 259 47.9
Cc00_g31090 Coffea canephora HOM05D005991 ORTHO05D007408 9.3e-46 187.6 257 49.0
Eucgr.H04085 Eucalyptus grandis HOM05D005991 ORTHO05D007408 9.3e-46 187.6 256 47.7
Haze_00826 Corylus avellana HOM05D005991 ORTHO05D007408 1.2e-45 187.2 255 47.8
Rhsim02G0001600 Rhododendron simsii HOM05D005991 ORTHO05D007408 1.2e-45 187.2 250 49.6
FAN17G2933 Fragaria x ananassa HOM05D005991 ORTHO05D007408 1.6e-45 186.8 257 47.5
RcHm_v2.0_Chr4g0426321 Rosa chinensis HOM05D005991 ORTHO05D007408 1.6e-45 186.8 257 47.5
MELO3C021248.2 Cucumis melo HOM05D005991 ORTHO05D007408 4.6e-45 185.3 256 47.3
FvH4_4g20890 Fragaria vesca HOM05D005991 ORTHO05D007408 4.6e-45 185.3 257 47.1
Lj9A696T49 Lonicera japonica HOM05D005991 ORTHO05D007408 4.6e-45 185.3 258 48.8
Sopen04g029760 Solanum pennellii HOM05D005991 ORTHO05D007408 4.6e-45 185.3 255 45.9
CsaV3_6G000060 Cucumis sativus L. HOM05D005991 ORTHO05D007408 6.0e-45 184.9 247 48.6
Migut.I00898 Erythranthe guttata HOM05D005991 ORTHO05D007408 1.3e-44 183.7 259 45.9
Actinidia18486 Actinidia chinensis HOM05D005991 ORTHO05D007408 2.3e-44 183.0 124 77.4
Nitab4.5_0003374g0080 Nicotiana tabacum HOM05D005991 ORTHO05D007408 2.3e-44 183.0 259 47.1
Nitab4.5_0013885g0020 Nicotiana tabacum HOM05D005991 ORTHO05D007408 3.9e-44 182.2 256 46.1
Solyc04g074800.3 Solanum lycopersicum HOM05D005991 ORTHO05D007408 3.9e-44 182.2 262 45.4
PGSC0003DMG400030844 Solanum tuberosum HOM05D005991 ORTHO05D007408 3.9e-44 182.2 259 45.9
Lj4g0017646 Lotus japonicus HOM05D005991 ORTHO05D007408 6.7e-44 181.4 249 47.4
Prupe.1G111000 Prunus persica HOM05D005991 ORTHO05D007408 6.7e-44 181.4 262 46.2
CAN.G1173.8 Capsicum annuum HOM05D005991 ORTHO05D007408 1.1e-43 180.6 248 47.2
Duzib151G0057 Durio zibethinus HOM05D005991 ORTHO05D007408 1.1e-43 180.6 124 79.0
vmacro19301 Vaccinium macrocarpon HOM05D005991 ORTHO05D007408 1.1e-43 180.6 257 46.3
Peaxi162Scf00139g00312 Petunia axillaris HOM05D005991 ORTHO05D007408 1.9e-43 179.9 258 46.5
FAN12G0391 Fragaria x ananassa HOM05D005991 ORTHO05D007408 3.3e-43 179.1 267 45.7
QL06p013384 Quercus lobata HOM05D005991 ORTHO05D007408 4.3e-43 178.7 259 47.9
Thecc.04G307900 Theobroma cacao HOM05D005991 ORTHO05D007408 7.4e-43 177.9 124 77.4
Ca_21401_v3 Cicer arietinum L. HOM05D005991 ORTHO05D007408 9.6e-43 177.6 250 45.6
FAN07G2713 Fragaria x ananassa HOM05D005991 ORTHO05D007408 9.6e-43 177.6 266 45.9
MD13G1147500 Malus domestica HOM05D005991 ORTHO05D007408 9.6e-43 177.6 264 45.5
Lalb_Chr13g0298761 Lupinus albus HOM05D005991 ORTHO05D007408 1.6e-42 176.8 244 48.0
Aqoxy7G00454 Aquilegia oxysepala HOM05D005991 ORTHO05D007408 2.8e-42 176.0 256 46.9
TPR.G12610 Trifolium pratense HOM05D005991 ORTHO05D007408 3.7e-42 175.6 228 48.7
Glyma.07G232800 Glycine max HOM05D005991 ORTHO05D007408 8.2e-42 174.5 247 48.6
Manes.03G209000 Manihot esculenta HOM05D005991 ORTHO05D007408 8.2e-42 174.5 121 78.5
COL.COLO4_34551 Corchorus olitorius HOM05D005991 ORTHO05D007408 1.1e-41 174.1 127 74.0
Gohir.A02G056400 Gossypium hirsutum HOM05D005991 ORTHO05D007408 1.8e-41 173.3 124 75.8
ATR0693G149 Amborella trichopoda HOM05D005991 ORTHO05D007408 3.1e-41 172.6 246 46.7
Gohir.D02G061600 Gossypium hirsutum HOM05D005991 ORTHO05D007408 4.0e-41 172.2 124 75.0
Gorai.005G069300 Gossypium raimondii HOM05D005991 ORTHO05D007408 4.0e-41 172.2 124 75.0
VMungo1215G0582 Vigna mungo HOM05D005991 ORTHO05D007408 5.3e-41 171.8 247 47.4
Psat0s2692g0080 Pisum sativum HOM05D005991 ORTHO05D007408 6.9e-41 171.4 247 44.9
CANSAT78G1707 Cannabis sativa HOM05D005991 ORTHO05D007408 1.2e-40 170.6 221 49.3
CiPaw.01G133100 Carya illinoinensis HOM05D005991 ORTHO05D007408 2.6e-40 169.5 122 76.2
Ciclev10005452m.g Citrus clementina HOM05D005991 ORTHO05D007408 5.8e-40 168.3 124 75.0
Potri.010G151300 Populus trichocarpa HOM05D005991 ORTHO05D007408 7.6e-40 167.9 121 75.2
Lsat_1_v5_gn_4_27741 Lactuca sativa HOM05D005991 ORTHO05D007408 1.0e-39 167.5 230 48.3
Medtr4g123060 Medicago truncatula HOM05D005991 ORTHO05D007408 1.0e-39 167.5 221 48.4
Glyma.17G037800 Glycine max HOM05D005991 ORTHO05D007408 1.3e-39 167.2 245 48.2
HanXRQChr16g0526201 Helianthus annuus HOM05D005991 ORTHO05D007408 1.7e-39 166.8 250 48.4
TWI53G1476 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 5.0e-39 165.2 124 75.0
TWI73G0156 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 5.0e-39 165.2 126 74.6
Zm00001eb340570 Zea mays HOM05D005991 ORTHO05D007408 6.5e-39 164.9 121 71.1
Os01g0328500 Oryza sativa ssp. japonica HOM05D005991 ORTHO05D007408 8.4e-39 164.5 237 44.3
ECA234G0222 Erigeron canadensis HOM05D005991 ORTHO05D007408 1.1e-38 164.1 273 43.2
Cpa.g.sc146.66 Carica papaya HOM05D005991 ORTHO05D007408 1.4e-38 163.7 124 71.8
PGR119G0116 Punica granatum HOM05D005991 ORTHO05D007408 1.4e-38 163.7 121 73.6
Phvul.003G118700 Phaseolus vulgaris HOM05D005991 ORTHO05D007408 1.9e-38 163.3 247 47.4
HPP92_017296 Vanilla planifolia HOM05D005991 ORTHO05D007408 2.5e-38 162.9 226 47.8
Atru.chr4.3094 Acer truncatum HOM05D005991 ORTHO05D007408 4.2e-38 162.2 254 46.1
arahy.Tifrunner.gnm1.ann1.5JMV2K Arachis hypogaea HOM05D005991 ORTHO05D007408 7.1e-38 161.4 252 44.8
arahy.Tifrunner.gnm1.ann1.KWD76U Arachis hypogaea HOM05D005991 ORTHO05D007408 7.1e-38 161.4 252 45.6
THA.LOC104827106 Tarenaya hassleriana HOM05D005991 ORTHO05D007408 1.6e-37 160.2 159 57.2
TWI09G0093 Tripterygium wilfordii HOM05D005991 ORTHO05D007408 2.7e-37 159.5 251 45.0
arahy.Tifrunner.gnm1.ann1.ELD4MI Arachis hypogaea HOM05D005991 ORTHO05D007408 3.5e-37 159.1 244 46.7
Zm00001eb131050 Zea mays HOM05D005991 ORTHO05D007408 1.0e-36 157.5 121 67.8
MD16G1145900 Malus domestica HOM05D005991 ORTHO05D007408 2.3e-36 156.4 124 71.0
PSO017G0870 Papaver somniferum HOM05D005991 ORTHO05D007408 3.9e-36 155.6 246 44.3
PSO675G8194 Papaver somniferum HOM05D005991 ORTHO05D007408 2.5e-35 152.9 246 43.9
Aa31LG11G8380 Aethionema arabicum HOM05D005991 ORTHO05D007408 5.7e-35 151.8 188 52.7
Sp6g09550 Schrenkiella parvula HOM05D005991 ORTHO05D007408 7.4e-35 151.4 121 69.4
A06p38170 Brassica napus HOM05D005991 ORTHO05D007408 1.6e-34 150.2 118 69.5
Sp2g19950 Schrenkiella parvula HOM05D005991 ORTHO05D007408 1.6e-34 150.2 121 67.8
C09p05460 Brassica napus HOM05D005991 ORTHO05D007408 3.7e-34 149.1 118 67.8
BcaNung02118 Brassica carinata HOM05D005991 ORTHO05D007408 4.8e-34 148.7 118 68.6
C07p40040 Brassica napus HOM05D005991 ORTHO05D007408 4.8e-34 148.7 118 68.6
BraA06t26732Z Brassica rapa HOM05D005991 ORTHO05D007408 4.8e-34 148.7 118 68.6
AL6G41020 Arabidopsis lyrata HOM05D005991 ORTHO05D007408 8.2e-34 147.9 122 66.4
AT5G30490 Arabidopsis thaliana HOM05D005991 ORTHO05D007408 1.4e-33 147.1 122 66.4
BcaB04g19640 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-33 147.1 134 63.4
BcaC06g30693 Brassica carinata HOM05D005991 ORTHO05D007408 1.4e-33 147.1 126 65.1
BcaC04g23714 Brassica carinata HOM05D005991 ORTHO05D007408 1.8e-33 146.7 118 66.9
Carub.0020s0004 Capsella rubella HOM05D005991 ORTHO05D007408 1.8e-33 146.7 121 66.1
A09p05050 Brassica napus HOM05D005991 ORTHO05D007408 4.1e-33 145.6 118 66.9
BraA09t36144Z Brassica rapa HOM05D005991 ORTHO05D007408 4.1e-33 145.6 118 66.9
BolC7t44538H Brassica oleracea HOM05D005991 ORTHO05D007408 6.9e-33 144.8 184 50.5
BolC9t53475H Brassica oleracea HOM05D005991 ORTHO05D007408 1.5e-32 143.7 168 53.0
Thhalv10004825m.g Eutrema salsugineum HOM05D005991 ORTHO05D007408 1.3e-31 140.6 125 61.6
CARHR185530 Cardamine hirsuta HOM05D005991 ORTHO05D007408 2.9e-31 139.4 124 62.1
arahy.Tifrunner.gnm1.ann1.FWR109 Arachis hypogaea HOM05D005991 ORTHO05D007408 1.4e-30 137.1 161 54.7
SEGI_07358 Sequoiadendron giganteum HOM05D005991 ORTHO05D007408 1.0e-28 131.0 121 57.9
Mapoly0030s0047 Marchantia polymorpha HOM05D005991 ORTHO05D007408 3.7e-26 122.5 125 54.4
AagrBONN_evm.TU.Sc2ySwM_117.1275 Anthoceros agrestis HOM05D005991 ORTHO05D007408 3.8e-23 112.5 112 58.9
CBR_g56129 Chara braunii HOM05D005991 ORTHO05D007408 2.7e-21 106.3 119 49.6
Cre14.g632600 Chlamydomonas reinhardtii HOM05D005991 ORTHO05D007408 4.7e-21 105.5 121 50.4
SMO203G0019 Selaginella moellendorffii HOM05D005991 ORTHO05D007408 4.7e-21 105.5 98 60.2
Pp3c5_15500 Physcomitrium patens HOM05D005991 ORTHO05D007408 4.8e-18 95.5 167 38.3
CSS0020858 Camellia sinensis var. sinensis HOM05D005991 ORTHO05D007408 6.5e-15 85.1 62 67.7
MCO08G234 Micromonas commoda HOM05D005991 ORTHO05D007408 2.1e-13 80.1 117 43.6
Actinidia31584 Actinidia chinensis HOM05D005991 ORTHO05D007408 3.6e-13 79.3 159 39.0
CDE05G0304 Ceratophyllum demersum HOM05D005991 ORTHO05D007408 1.1e-11 74.3 175 34.3
PRCOL_00003370 Prasinoderma coloniale HOM05D005991 ORTHO05D007408 7.7e-08 61.6 106 38.7


User provided reference genes

Program Settings