Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.1e-308 1061.6 554 100.0
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 6.1e-212 741.1 474 84.4
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 4.3e-197 691.8 649 61.5
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 5.1e-182 641.7 509 67.0
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.1e-181 640.6 525 65.1
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 3.3e-181 639.0 540 62.0
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 3.3e-181 639.0 511 64.2
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 4.3e-181 638.6 630 60.3
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 9.6e-181 637.5 548 65.0
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 9.6e-181 637.5 540 62.4
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 1.2e-180 637.1 538 63.8
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 1.6e-180 636.7 641 58.2
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 2.8e-180 636.0 621 56.7
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 6.2e-180 634.8 499 65.9
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 2.4e-179 632.9 620 59.5
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 4.0e-179 632.1 511 64.2
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 5.3e-179 631.7 541 61.6
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 5.3e-179 631.7 561 61.7
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 9.0e-179 630.9 635 56.9
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.5e-178 630.2 640 58.8
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 2.0e-178 629.8 637 56.4
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.0e-178 629.8 552 60.5
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 2.6e-178 629.4 638 56.0
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 7.6e-178 627.9 627 59.6
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 3.8e-177 625.5 544 60.3
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 1.9e-176 623.2 501 65.7
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 2.4e-176 622.9 553 63.1
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 7.1e-176 621.3 501 65.3
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 1.6e-175 620.2 553 60.8
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 2.1e-175 619.8 615 56.4
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.5e-175 619.0 544 61.4
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 3.5e-175 619.0 649 54.5
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.0e-174 617.5 508 65.0
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 1.0e-174 617.5 497 65.0
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 2.3e-174 616.3 576 58.7
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 3.0e-174 615.9 495 64.8
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 6.6e-174 614.8 500 64.4
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.1e-173 614.0 504 63.7
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 2.5e-173 612.8 544 61.0
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 2.5e-173 612.8 546 61.2
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 2.1e-172 609.8 612 57.4
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 2.1e-172 609.8 548 60.0
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 2.1e-172 609.8 548 60.0
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 2.8e-172 609.4 495 64.2
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 3.6e-172 609.0 497 64.6
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 8.1e-172 607.8 558 59.1
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.8e-171 606.7 558 59.5
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 2.4e-171 606.3 646 52.8
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 4.0e-171 605.5 631 55.0
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 6.9e-171 604.7 554 60.1
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 6.9e-171 604.7 644 54.2
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 9.0e-171 604.4 499 63.7
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 9.0e-171 604.4 509 62.5
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-170 603.6 507 63.1
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 2.6e-170 602.8 630 54.1
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 2.6e-170 602.8 501 64.3
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 4.5e-170 602.1 495 63.2
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 7.6e-170 601.3 630 53.7
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 9.9e-170 600.9 544 59.9
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 1.7e-169 600.1 495 63.6
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 6.4e-169 598.2 642 54.0
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.1e-168 597.4 547 59.6
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 1.4e-168 597.0 495 62.6
PSO384G0045 Papaver somniferum HOM05D003665 ORTHO05D004387 7.1e-168 594.7 546 59.5
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 7.9e-167 591.3 497 64.0
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 2.3e-166 589.7 498 62.0
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 2.3e-166 589.7 487 63.4
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 3.0e-166 589.3 497 62.6
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 3.0e-166 589.3 493 62.7
PSO339G3164 Papaver somniferum HOM05D003665 ORTHO05D004387 5.1e-166 588.6 546 59.2
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 1.9e-165 586.6 532 62.8
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 1.6e-164 583.6 488 62.7
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.8e-164 582.8 485 63.3
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.8e-164 582.8 493 61.9
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 3.7e-164 582.4 498 61.6
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 1.1e-163 580.9 493 61.7
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 1.4e-163 580.5 480 64.0
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.1e-163 579.3 484 62.4
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 6.9e-163 578.2 537 58.5
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-162 577.0 496 62.1
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 2.0e-162 576.6 491 63.1
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 2.0e-162 576.6 500 61.0
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 3.4e-162 575.9 542 57.7
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 4.5e-162 575.5 476 63.9
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 1.3e-161 573.9 637 53.2
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 1.3e-161 573.9 510 60.8
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 6.4e-161 571.6 529 59.0
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.4e-161 571.2 615 57.6
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.5e-160 569.7 507 59.8
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 4.2e-160 568.9 509 60.1
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 5.5e-160 568.5 465 64.1
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 7.1e-160 568.2 508 59.6
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 2.1e-159 566.6 504 59.1
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 4.6e-159 565.5 507 60.2
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 1.3e-158 563.9 511 58.5
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 1.5e-157 560.5 645 51.9
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 2.5e-157 559.7 486 59.9
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 5.6e-157 558.5 505 58.8
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 3.7e-156 555.8 534 56.6
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 3.7e-156 555.8 376 73.9
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 1.1e-155 554.3 505 58.6
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 1.8e-155 553.5 505 58.4
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 4.0e-155 552.4 498 59.4
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 4.0e-155 552.4 506 58.9
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 4.0e-155 552.4 503 58.6
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 6.9e-155 551.6 545 55.4
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 1.2e-154 550.8 636 51.4
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.0e-154 550.1 505 58.0
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 5.8e-154 548.5 501 60.5
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 1.3e-153 547.4 543 54.7
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 1.7e-153 547.0 506 58.9
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 2.2e-153 546.6 543 54.5
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 4.9e-153 545.4 492 59.6
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 1.1e-152 544.3 506 57.3
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.9e-152 543.5 510 56.7
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 4.2e-152 542.3 543 54.3
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 3.5e-151 539.3 417 67.1
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 5.1e-150 535.4 500 58.4
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 6.7e-150 535.0 595 53.4
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 2.5e-149 533.1 489 57.3
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 5.7e-149 531.9 492 56.9
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 5.7e-149 531.9 539 53.4
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.3e-148 530.8 470 59.8
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 2.4e-147 526.6 489 63.0
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 4.5e-146 522.3 483 56.9
unitig_899.g14918 Utricularia gibba HOM05D003665 ORTHO05D004387 2.7e-143 513.1 375 69.6
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 1.5e-141 507.3 492 57.1
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 6.3e-140 501.9 609 52.7
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 1.5e-138 497.3 425 63.8
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 1.3e-137 494.2 441 59.6
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.4e-133 479.2 448 57.8
SEGI_16973 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 1.7e-132 477.2 479 51.8
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.6e-130 469.9 652 45.2
Mapoly0115s0070 Marchantia polymorpha HOM05D003665 ORTHO05D004387 2.2e-129 466.8 511 49.1
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 8.5e-129 464.9 584 47.6
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 5.9e-122 442.2 430 57.4
SMO356G0046 Selaginella moellendorffii HOM05D003665 ORTHO05D004387 7.7e-122 441.8 484 48.3
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 5.5e-120 435.6 364 62.9
Pp3c3_30360 Physcomitrium patens HOM05D003665 ORTHO05D004387 4.4e-117 426.0 494 47.2
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.3e-113 414.5 627 43.1
Gohir.D08G215600 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.7e-113 414.1 425 55.5
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 2.2e-113 413.7 332 65.4
AagrBONN_evm.TU.Sc2ySwM_117.1231 Anthoceros agrestis HOM05D003665 ORTHO05D004387 4.2e-112 409.5 488 45.1
Actinidia13994 Actinidia chinensis HOM05D003665 ORTHO05D004387 8.8e-110 401.7 331 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3586 Anthoceros agrestis HOM05D003665 ORTHO05D004387 1.7e-105 387.5 476 45.8
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 1.0e-102 378.3 234 77.8
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 7.5e-101 372.1 234 75.6
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 9.5e-96 355.1 218 77.5
Pp3c10_13820 Physcomitrium patens HOM05D003665 ORTHO05D004387 1.4e-94 351.3 440 46.4
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 4.4e-85 319.7 325 51.4
CAN.G479.67 Capsicum annuum HOM05D003665 ORTHO05D004387 3.8e-68 263.5 263 58.6
PGSC0003DMG400019504 Solanum tuberosum HOM05D003665 ORTHO05D004387 3.2e-67 260.4 228 63.6
BcaB06g25423 Brassica carinata HOM05D003665 ORTHO05D004387 3.0e-65 253.8 223 63.7
SHI09320 Sapria himalayana HOM05D003665 ORTHO05D004387 4.2e-59 233.4 185 63.2
CDE08G1291 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.6e-58 229.9 186 65.1
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 9.0e-54 215.7 152 67.8
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 9.9e-53 212.2 144 72.9
CDE02G1163 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 1.3e-44 185.3 240 48.3
CBR_g29308 Chara braunii HOM05D000019 ORTHO05D000002 8.4e-44 182.6 212 50.0
Actinidia13995 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.0e-38 162.5 135 67.4
MCO05G084 Micromonas commoda HOM05D003665 ORTHO05D004387 4.6e-34 150.2 649 22.8
Lsat_1_v5_gn_6_39960 Lactuca sativa HOM05D003665 ORTHO05D004387 2.2e-31 141.4 128 60.9
TPR.G15544 Trifolium pratense HOM05D003665 ORTHO05D004387 8.2e-31 139.4 69 89.9
Lsat_1_v5_gn_6_45780 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-30 138.7 98 71.4
Lsat_1_v5_gn_8_29480 Lactuca sativa HOM05D003665 ORTHO05D004387 1.4e-30 138.7 98 71.4
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 6.9e-30 136.3 98 70.4
Duzib235G1059 Durio zibethinus HOM05D003665 ORTHO05D004387 3.4e-29 134.0 145 53.8
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 1.1e-27 129.0 98 67.3
Duzib084G1104 Durio zibethinus HOM05D003665 ORTHO05D004387 3.6e-26 124.0 81 76.5
Cre03.g154500 Chlamydomonas reinhardtii HOM05D003665 ORTHO05D004387 4.3e-24 117.1 300 29.3
Cfa025752 Carpinus fangiana HOM05D003665 ORTHO05D004387 6.9e-22 109.8 489 22.3
Glyma.11G146000 Glycine max HOM05D003665 ORTHO05D004387 7.7e-21 106.3 64 78.1
SHI09316 Sapria himalayana HOM05D003665 ORTHO05D004387 1.0e-20 105.9 63 76.2
SHI09315 Sapria himalayana HOM05D003665 ORTHO05D004387 1.3e-20 105.5 53 90.6
VMungo1074G0001 Vigna mungo HOM05D003665 ORTHO05D004387 2.2e-20 104.8 145 45.5
Ca_23093_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 5.0e-20 103.6 83 65.1
BolC4t27275H Brassica oleracea HOM05D003665 ORTHO05D004387 5.1e-17 93.6 125 43.2
arahy.Tifrunner.gnm1.ann1.3H693L Arachis hypogaea HOM05D003665 ORTHO05D004387 6.7e-17 93.2 50 82.0
Lalb_Chr22g0350671 Lupinus albus HOM05D003665 ORTHO05D004387 9.4e-11 72.8 43 81.4
BraA04t17717Z Brassica rapa HOM05D003665 ORTHO05D040370 2.3e-09 68.2 64 53.1
C04p57550 Brassica napus HOM05D003665 ORTHO05D040370 1.7e-07 62.0 41 63.4
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 2.8e-07 61.2 32 78.1


User provided reference genes

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