Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-223 778.9 381 100.0
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.2e-214 749.6 381 95.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.2e-183 645.2 380 83.9
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.1e-178 630.2 401 79.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.4e-162 575.9 377 74.8
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 8.9e-162 573.9 379 73.1
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.6e-161 572.4 381 73.8
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 3.4e-161 572.0 381 74.5
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 3.8e-160 568.5 378 74.1
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 4.9e-160 568.2 383 72.8
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 6.4e-160 567.8 382 73.0
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 6.4e-160 567.8 380 72.9
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.4e-159 565.8 379 75.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 5.4e-159 564.7 380 72.9
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-158 563.5 380 71.8
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 4.6e-158 561.6 381 72.7
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 4.6e-158 561.6 382 72.3
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.0e-158 561.2 383 72.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 7.8e-158 560.8 383 72.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 2.3e-157 559.3 382 73.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 2.3e-157 559.3 383 71.5
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 3.0e-157 558.9 382 72.0
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 3.0e-157 558.9 382 72.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 3.0e-157 558.9 382 71.7
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 8.7e-157 557.4 385 72.5
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-156 557.0 379 72.3
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.1e-156 557.0 401 69.8
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-156 556.2 383 71.8
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.9e-156 556.2 379 72.0
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.9e-156 556.2 377 72.4
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.5e-156 555.8 382 71.5
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 5.6e-156 554.7 405 67.4
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 7.3e-156 554.3 380 71.6
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 9.6e-156 553.9 387 72.6
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.2e-155 553.5 382 70.9
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 2.1e-155 552.7 380 71.6
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 2.8e-155 552.4 383 71.3
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 2.8e-155 552.4 380 72.4
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 8.1e-155 550.8 381 72.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.4e-154 550.1 381 71.9
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.8e-154 549.7 380 71.8
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.4e-154 549.3 397 69.8
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 3.1e-154 548.9 379 71.0
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 4.0e-154 548.5 308 83.1
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 4.0e-154 548.5 376 72.6
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 5.3e-154 548.1 385 72.2
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 9.0e-154 547.4 378 70.9
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 9.0e-154 547.4 370 72.4
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.2e-153 547.0 380 72.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 3.4e-153 545.4 383 71.3
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.4e-153 545.0 393 68.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 5.8e-153 544.7 319 79.3
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 7.6e-153 544.3 380 70.3
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 9.9e-153 543.9 381 70.3
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 9.9e-153 543.9 377 70.3
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.3e-152 543.5 310 81.6
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.3e-152 543.5 376 71.0
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.3e-152 543.5 366 74.0
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.2e-152 542.7 385 69.9
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 2.2e-152 542.7 382 72.5
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 3.8e-152 542.0 380 69.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.2e-151 538.9 379 69.7
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 4.2e-151 538.5 317 80.4
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 5.4e-151 538.1 332 77.7
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 5.4e-151 538.1 380 71.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.5e-150 535.4 316 79.4
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 4.6e-150 535.0 331 76.4
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 4.6e-150 535.0 382 69.1
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 6.0e-150 534.6 379 68.6
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.0e-149 533.9 381 69.0
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.0e-149 533.9 381 69.3
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.0e-149 532.3 386 69.7
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 5.1e-149 531.6 381 69.8
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-148 530.4 308 78.6
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.5e-148 530.0 381 67.2
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 4.3e-148 528.5 399 67.2
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 2.1e-147 526.2 381 66.9
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.8e-147 525.0 379 68.3
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 6.2e-147 524.6 381 68.5
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.4e-146 523.5 316 77.2
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-146 523.1 387 66.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 3.1e-146 522.3 307 79.2
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.0e-146 521.9 381 68.8
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.0e-146 521.9 381 68.8
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 3.4e-145 518.8 307 79.5
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.4e-145 518.8 340 72.4
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 3.4e-145 518.8 315 77.1
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 4.5e-145 518.5 383 68.4
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 4.5e-145 518.5 308 76.0
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.8e-145 518.1 318 75.8
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 9.9e-145 517.3 383 67.1
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 9.9e-145 517.3 383 67.1
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 9.9e-145 517.3 381 68.8
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.3e-144 516.9 382 67.8
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.2e-144 516.2 351 74.1
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-144 515.8 387 65.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 6.4e-144 514.6 381 68.5
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 8.4e-144 514.2 381 68.5
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 8.4e-144 514.2 387 65.1
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 8.4e-144 514.2 315 76.2
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 7.1e-143 511.1 360 69.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 6.0e-142 508.1 380 66.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 6.0e-142 508.1 349 71.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 5.1e-141 505.0 379 67.0
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 6.7e-141 504.6 401 64.6
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 8.7e-141 504.2 381 68.0
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 5.6e-140 501.5 379 66.5
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 4.8e-139 498.4 380 66.3
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.4e-138 496.9 306 74.8
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.1e-138 495.7 315 74.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.0e-138 495.4 317 73.2
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 6.9e-138 494.6 352 70.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.8e-137 491.5 378 62.7
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.3e-136 490.3 387 65.6
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 8.4e-136 487.6 307 73.6
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.2e-135 485.7 311 74.0
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 2.1e-134 483.0 380 64.5
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 6.0e-134 481.5 310 71.9
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.3e-133 479.6 301 71.1
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.5e-132 476.1 352 69.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.6e-131 473.4 379 63.3
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.1e-130 470.7 320 70.6
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.5e-129 466.8 326 72.1
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 2.9e-128 462.6 350 68.6
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 5.5e-127 458.4 326 69.0
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.9e-124 449.9 293 70.3
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 9.0e-122 441.0 257 79.0
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 9.0e-122 441.0 257 79.0
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 3.4e-121 439.1 329 61.4
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 3.2e-119 432.6 241 83.8
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 4.2e-119 432.2 388 59.0
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.1e-118 429.9 291 63.9
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.8e-114 416.8 302 63.6
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 1.7e-112 410.2 329 58.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 3.0e-109 399.4 318 57.5
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 3.0e-109 399.4 270 72.2
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.8e-107 392.9 327 63.3
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.7e-104 383.6 265 71.7
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 9.4e-103 377.9 236 72.9
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.1e-100 370.9 297 58.6
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 7.4e-100 368.2 227 77.5
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.7e-96 357.1 378 50.3
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.6e-92 343.2 236 74.2
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 3.1e-90 336.3 236 67.8
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.6e-89 334.0 196 78.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.3e-88 330.9 196 77.6
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 6.8e-85 318.5 226 71.2
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 3.7e-75 286.2 344 45.3
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.0e-72 275.8 196 71.4
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-71 274.6 343 46.1
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.9e-71 273.9 219 64.8
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.3e-67 261.2 299 45.2
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.7e-67 260.8 298 48.0
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.0e-64 251.5 304 44.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 4.4e-52 209.5 153 69.9
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 7.8e-49 198.7 112 77.7
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.2e-44 184.9 341 37.8
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 2.0e-44 184.1 184 56.0
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-37 161.0 94 85.1
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 3.1e-37 160.2 131 66.4
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-37 159.8 92 85.9
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-36 157.9 131 65.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.6e-36 157.1 94 81.9
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 4.4e-36 156.4 92 83.7
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 1.3e-35 154.8 131 64.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 7.3e-31 139.0 97 75.3
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.5e-28 129.8 66 90.9
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 3.8e-27 126.7 77 74.0
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 4.2e-26 123.2 342 27.2
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.8e-24 117.9 73 71.2
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.9e-24 116.7 133 51.9
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.1e-23 115.2 92 68.5
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-22 111.7 60 81.7
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.0e-20 104.4 116 51.7
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.6e-17 93.2 62 72.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.9e-15 87.8 107 46.7
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 4.3e-15 86.7 247 29.6
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 2.4e-13 80.9 47 83.0
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.5e-12 76.6 41 85.4
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 1.1e-10 72.0 73 50.7
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 2.7e-09 67.4 102 41.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 69.0
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.0e-08 65.5 42 69.0
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.9e-08 63.5 33 93.9


User provided reference genes

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