Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 0.0e+00 1367.1 675 100.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 3.1e-258 895.2 675 70.5
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 7.4e-236 820.8 628 64.6
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 6.5e-232 807.7 581 70.6
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 2.6e-228 795.8 581 68.7
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 7.1e-178 628.2 632 51.7
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 3.5e-177 625.9 633 52.6
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 5.6e-175 618.6 632 51.9
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.4e-173 614.0 632 50.0
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-173 613.6 632 51.7
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 9.9e-172 607.8 631 51.3
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 2.7e-169 599.7 645 48.8
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 7.8e-169 598.2 633 48.8
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 3.9e-168 595.9 587 54.2
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 1.1e-167 594.3 640 48.8
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 4.3e-167 592.4 630 49.7
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 9.6e-167 591.3 635 49.1
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 3.1e-165 586.3 587 51.1
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 5.3e-165 585.5 647 48.7
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 6.9e-165 585.1 637 48.7
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 1.2e-164 584.3 644 49.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.2e-164 584.3 633 50.4
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 5.8e-164 582.0 644 49.4
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 6.4e-163 578.6 633 47.7
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 2.4e-162 576.6 633 49.8
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 4.2e-162 575.9 577 51.6
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 4.2e-162 575.9 584 51.2
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 1.6e-161 573.9 637 49.1
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 3.5e-161 572.8 587 50.8
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 2.3e-160 570.1 587 51.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 4.8e-158 562.4 633 48.0
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 6.2e-158 562.0 637 48.5
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 8.1e-158 561.6 634 47.6
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 8.1e-158 561.6 685 46.7
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.8e-157 560.5 675 45.6
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 2.4e-157 560.1 646 47.2
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 4.0e-157 559.3 641 46.8
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 1.2e-156 557.8 587 50.8
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 1.2e-156 557.8 583 49.6
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.4e-156 556.2 633 46.3
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 7.6e-156 555.1 584 50.3
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 1.7e-155 553.9 587 49.4
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 1.7e-155 553.9 633 47.6
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 3.2e-154 549.7 626 47.4
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 5.5e-154 548.9 629 47.5
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 7.1e-154 548.5 588 50.0
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 7.1e-154 548.5 581 50.4
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.6e-153 547.4 628 47.9
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.0e-152 544.7 591 49.1
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 3.0e-152 543.1 587 48.2
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 3.9e-152 542.7 685 45.8
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 5.1e-152 542.3 594 48.0
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 6.7e-152 542.0 630 47.0
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 8.7e-152 541.6 630 47.0
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 1.1e-151 541.2 610 47.5
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.9e-151 540.4 589 49.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 7.4e-151 538.5 642 46.7
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 1.3e-150 537.7 587 49.1
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 1.6e-150 537.3 653 46.2
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 2.1e-150 537.0 587 48.7
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.1e-149 534.6 584 47.9
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 2.4e-149 533.5 586 47.6
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 5.3e-149 532.3 685 44.8
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 9.0e-149 531.6 635 45.4
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 1.2e-148 531.2 542 52.0
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 2.6e-148 530.0 590 46.8
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 3.4e-148 529.6 626 46.3
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 7.6e-148 528.5 605 47.8
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 7.6e-148 528.5 605 47.8
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.1e-146 524.6 628 45.5
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 7.1e-146 521.9 589 47.9
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 9.3e-146 521.5 583 48.0
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 4.6e-145 519.2 592 47.3
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 2.5e-143 513.5 627 45.3
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 9.6e-143 511.5 625 45.6
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 3.7e-142 509.6 628 45.4
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 1.8e-141 507.3 622 45.3
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 2.4e-141 506.9 493 53.1
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 4.5e-140 502.7 626 45.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 1.3e-139 501.1 627 45.1
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 1.3e-139 501.1 627 45.1
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.1e-135 488.0 626 44.1
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 2.5e-135 486.9 651 43.5
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 4.3e-135 486.1 588 45.1
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 7.4e-135 485.3 660 41.4
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 3.7e-134 483.0 639 43.8
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 1.1e-133 481.5 634 41.5
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 1.4e-133 481.1 590 45.9
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 4.1e-133 479.6 632 43.5
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.9e-131 473.4 631 43.1
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 5.5e-130 469.2 605 41.8
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 5.7e-127 459.1 630 41.0
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.2e-121 441.4 615 41.3
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 7.4e-119 432.2 622 41.6
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 5.4e-101 372.9 300 60.7
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 6.1e-97 359.4 471 44.2
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 4.9e-94 349.7 302 57.9
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 2.9e-91 340.5 292 57.2
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 4.3e-90 336.7 624 33.5
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 2.2e-86 324.3 634 33.6
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 3.2e-85 320.5 472 40.7
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 8.0e-81 305.8 644 31.1
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 1.2e-71 275.4 315 48.3
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.2e-68 265.4 413 34.9
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.0e-67 260.8 336 41.1
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.1e-65 254.6 393 38.7
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 2.4e-64 251.1 393 38.4
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 4.6e-60 236.9 382 37.4
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 1.3e-54 218.8 379 36.7
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 2.4e-48 198.0 213 48.8
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.6e-44 185.3 471 29.7
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 5.3e-40 170.2 346 35.0
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 1.6e-36 158.7 176 47.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 4.5e-31 140.6 85 77.6
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 2.0e-23 115.2 76 69.7
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 4.1e-16 90.9 104 41.3
CSS0004694 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.1e-16 89.7 57 73.7
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.5e-15 89.0 116 41.4
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 1.5e-15 89.0 100 45.0
CSS0019302 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 4.5e-15 87.4 57 73.7
CSS0027478 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.7e-15 86.7 57 71.9
CSS0028236 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 7.7e-15 86.7 57 71.9
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 7.7e-15 86.7 102 45.1
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.9e-14 84.7 75 56.0
CSS0047987 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.1e-13 82.8 57 71.9
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.1e-13 82.8 134 34.3
QL02p008273 Quercus lobata HOM05D006037 ORTHO05D007384 3.6e-12 77.8 39 87.2
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 4.8e-09 67.4 76 47.4
AUR62010228 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.2e-06 58.5 35 82.9
CSS0043972 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 8.5e-06 56.6 57 52.6
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 8.5e-06 56.6 54 57.4


User provided reference genes

Program Settings