Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 0.0e+00 1354.7 681 100.0
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 0.0e+00 1266.5 681 93.4
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 0.0e+00 1077.0 682 78.7
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.7e-240 836.3 694 59.9
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.5e-239 832.4 599 69.9
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.1e-226 790.4 705 57.6
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 2.3e-221 772.7 700 57.7
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 2.6e-220 769.2 699 57.7
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 1.7e-219 766.5 713 55.8
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 4.9e-219 765.0 702 56.6
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.4e-218 762.7 700 56.6
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 3.4e-212 742.3 707 55.0
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 2.2e-211 739.6 701 54.4
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.2e-211 739.6 709 54.2
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 3.7e-211 738.8 707 55.2
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.1e-210 737.3 703 53.8
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 5.4e-210 734.9 757 52.8
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 3.0e-208 729.2 724 54.4
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 5.1e-208 728.4 721 54.4
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.9e-207 726.5 693 54.5
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 2.5e-207 726.1 680 54.7
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 2.1e-206 723.0 706 51.0
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 2.6e-204 716.1 700 53.6
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 2.2e-203 713.0 706 52.7
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 5.4e-202 708.4 695 53.1
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 2.3e-200 703.0 707 50.4
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 3.0e-200 702.6 690 53.2
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 3.0e-200 702.6 697 51.5
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 4.3e-199 698.7 696 51.4
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 9.6e-199 697.6 707 51.2
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.1e-198 696.4 696 51.1
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.8e-195 685.6 708 51.0
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 8.4e-195 684.5 698 50.3
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 1.1e-194 684.1 674 54.0
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 5.4e-194 681.8 706 50.0
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.2e-193 680.6 688 51.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 1.6e-193 680.2 708 50.1
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 2.1e-193 679.9 692 50.1
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 7.9e-193 677.9 704 50.0
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 1.7e-192 676.8 693 49.9
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 6.6e-192 674.9 698 51.3
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 1.5e-191 673.7 698 51.3
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 1.9e-191 673.3 693 50.2
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.3e-191 672.5 705 50.6
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 9.6e-191 671.0 701 50.1
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.6e-190 670.2 700 49.3
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 4.8e-190 668.7 696 51.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 2.6e-188 662.9 699 50.5
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 8.4e-187 657.9 700 47.9
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 8.7e-184 647.9 690 50.1
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 3.7e-182 642.5 705 48.8
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 6.9e-181 638.3 701 49.1
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 3.4e-180 636.0 706 48.3
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 1.0e-179 634.4 700 47.6
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 3.8e-179 632.5 704 48.7
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.8e-179 632.5 654 50.5
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 6.5e-179 631.7 699 48.8
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 1.1e-178 630.9 610 54.4
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.2e-177 627.5 700 48.9
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.1e-175 620.9 704 47.6
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.1e-175 620.9 707 48.2
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 4.3e-175 619.0 625 54.9
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 2.1e-174 616.7 736 46.5
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.1e-173 612.5 686 48.1
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.2e-172 610.9 588 57.0
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 2.9e-171 606.3 711 47.5
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 5.0e-171 605.5 512 57.2
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 6.1e-169 598.6 711 46.6
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 7.9e-169 598.2 694 46.1
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 1.8e-168 597.0 689 47.8
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 6.7e-168 595.1 700 45.7
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 1.6e-166 590.5 695 46.5
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 1.8e-165 587.0 718 46.0
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 2.9e-163 579.7 681 46.7
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 5.0e-163 578.9 681 47.1
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.3e-160 570.1 511 54.6
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 8.5e-155 551.6 455 58.7
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.4e-149 534.3 512 52.0
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 7.7e-148 528.5 608 47.9
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 4.7e-145 519.2 446 57.8
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 8.8e-144 515.0 446 57.4
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 7.5e-143 511.9 540 54.6
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 9.1e-141 505.0 404 62.4
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 2.2e-134 483.8 613 44.0
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 8.5e-131 471.9 448 54.5
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 2.3e-128 463.8 549 45.0
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 6.3e-126 455.7 478 51.7
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.4e-112 411.4 548 42.7
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 8.9e-112 408.7 529 44.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 4.9e-110 402.9 492 47.8
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 4.3e-106 389.8 668 37.3
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.1e-104 385.2 435 49.4
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.5e-98 364.8 490 41.2
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 2.7e-92 344.0 734 32.6
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 6.9e-88 329.3 847 28.7
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 9.9e-87 325.5 670 33.3
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 3.8e-86 323.6 378 49.2
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.1e-84 317.8 235 63.0
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.7e-83 314.7 709 31.9
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 1.7e-83 314.7 709 31.9
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.7e-75 286.2 689 31.6
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 5.6e-74 283.1 417 40.5
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 4.0e-72 276.9 584 32.5
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 9.3e-69 265.8 207 62.8
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 1.5e-63 248.4 186 61.3
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.5e-50 205.3 320 40.9
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 6.3e-41 173.3 160 48.8
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.5e-39 168.7 217 48.4
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 8.5e-38 162.9 146 52.7
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 9.7e-34 149.4 131 53.4
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-31 142.5 313 32.6
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 2.6e-31 141.4 207 39.1
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 4.7e-28 130.6 89 64.0
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 2.0e-26 125.2 114 55.3
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.3e-25 122.5 109 58.7
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.3e-22 112.5 248 30.6
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 1.4e-19 102.4 206 39.8
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 7.5e-18 96.7 186 34.4
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.6e-15 89.0 129 38.8
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 7.7e-15 86.7 59 61.0
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 4.7e-12 77.4 44 68.2
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 6.8e-11 73.6 43 67.4
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 2.7e-07 61.6 101 35.6
Nn7g37167 Nelumbo nucifera HOM05D006558 ORTHO05D008424 1.3e-06 59.3 56 58.9
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 1.3e-06 59.3 76 40.8
MBI08_g18916_MAGBIO Magnolia biondii HOM05D000017 ORTHO05D000013 2.3e-06 58.5 72 45.8
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 8.6e-06 56.6 50 66.0


User provided reference genes

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