Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62037142 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.9e-215 752.3 390 100.0
AUR62025062 Chenopodium quinoa HOM05D005864 ORTHO05D006770 1.0e-168 597.0 397 82.9
EL10Ac9g20653 Beta vulgaris HOM05D005864 ORTHO05D006770 1.2e-81 307.8 384 50.8
Ah.01g003700 Amaranthus hybridus HOM05D005864 ORTHO05D006770 3.8e-59 233.0 381 43.8
Sc21g0001650 Simmondsia chinensis HOM05D005864 ORTHO05D006770 1.2e-55 221.5 404 40.6
CiPaw.04G117700 Carya illinoinensis HOM05D005864 ORTHO05D006770 9.2e-45 185.3 394 36.8
Nn1g07000 Nelumbo nucifera HOM05D005864 ORTHO05D006770 4.3e-42 176.4 410 37.1
CiPaw.03G162800 Carya illinoinensis HOM05D005864 ORTHO05D006770 8.0e-41 172.2 402 34.8
Phvul.011G106100 Phaseolus vulgaris HOM05D005864 ORTHO05D006770 8.9e-40 168.7 380 35.0
Haze_12896 Corylus avellana HOM05D005864 ORTHO05D006770 2.9e-38 163.7 411 34.3
Atru.chr6.3147 Acer truncatum HOM05D005864 ORTHO05D006770 8.3e-38 162.2 381 33.9
Hma1.2p1_0613F.1_g189160 Hydrangea macrophylla HOM05D005864 ORTHO05D006770 2.4e-37 160.6 401 34.9
Manes.12G077600 Manihot esculenta HOM05D005864 ORTHO05D006770 3.2e-37 160.2 412 34.0
Lj3g0027429 Lotus japonicus HOM05D005864 ORTHO05D006770 5.4e-37 159.5 408 32.4
Oeu041940.1 Olea europaea HOM05D005864 ORTHO05D006770 5.4e-37 159.5 472 32.0
QL08p033779 Quercus lobata HOM05D005864 ORTHO05D006770 5.4e-37 159.5 402 34.1
Lalb_Chr19g0135701 Lupinus albus HOM05D005864 ORTHO05D006770 1.2e-36 158.3 391 34.0
GSVIVG01030622001 Vitis vinifera HOM05D005864 ORTHO05D006770 1.2e-36 158.3 405 33.6
Medtr4g046697 Medicago truncatula HOM05D005864 ORTHO05D006770 2.3e-35 154.1 394 32.0
Psat7g195480 Pisum sativum HOM05D005864 ORTHO05D006770 1.9e-34 151.0 391 33.0
Potri.007G121700 Populus trichocarpa HOM05D005864 ORTHO05D006770 7.3e-34 149.1 398 33.2
Dinv39688 Davidia involucrata HOM05D005864 ORTHO05D006770 1.2e-33 148.3 396 33.3
Eucgr.K00811 Eucalyptus grandis HOM05D005864 ORTHO05D006770 4.7e-33 146.4 368 31.5
MELO3C018803.2 Cucumis melo HOM05D005864 ORTHO05D006770 6.2e-33 146.0 394 29.9
ClCG02G001780 Citrullus lanatus HOM05D005864 ORTHO05D006770 2.3e-32 144.1 404 30.9
Glyma.06G306800 Glycine max HOM05D005864 ORTHO05D006770 5.2e-32 142.9 377 31.8
Thecc.02G162100 Theobroma cacao HOM05D005864 ORTHO05D006770 5.2e-32 142.9 394 33.5
Cpa.g.sc8.234 Carica papaya HOM05D005864 ORTHO05D006770 8.9e-32 142.1 413 32.2
FvH4_6g43530 Fragaria vesca HOM05D005864 ORTHO05D006770 1.2e-31 141.7 383 32.6
CsaV3_7G003760 Cucumis sativus L. HOM05D005864 ORTHO05D006770 2.0e-31 141.0 381 30.2
TWI36G0516 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 5.8e-31 139.4 424 31.4
SalBow7G0586 Salvia bowleyana HOM05D005864 ORTHO05D006770 9.8e-31 138.7 400 32.5
arahy.Tifrunner.gnm1.ann1.UG5YAZ Arachis hypogaea HOM05D005864 ORTHO05D006770 2.2e-30 137.5 371 31.5
COL.COLO4_12982 Corchorus olitorius HOM05D005864 ORTHO05D006770 8.3e-30 135.6 401 29.4
CDE05G1184 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 1.9e-29 134.4 394 31.7
FAN14G4164 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.4e-29 134.0 396 31.1
arahy.Tifrunner.gnm1.ann1.VAE2IM Arachis hypogaea HOM05D005864 ORTHO05D006770 4.1e-29 133.3 467 30.0
Sed0014520 Sechium edule HOM05D005864 ORTHO05D006770 9.2e-29 132.1 368 33.4
Actinidia12503 Actinidia chinensis HOM05D005864 ORTHO05D006770 2.7e-28 130.6 402 31.6
TAR624G1226 Trochodendron aralioides HOM05D005864 ORTHO05D006770 3.5e-28 130.2 313 35.8
TWI75G1887 Tripterygium wilfordii HOM05D005864 ORTHO05D006770 4.6e-28 129.8 343 32.7
Cc05_g05040 Coffea canephora HOM05D005864 ORTHO05D006770 1.0e-27 128.6 410 31.0
Gohir.D02G187200 Gossypium hirsutum HOM05D005864 ORTHO05D006770 1.0e-27 128.6 358 31.3
Solyc12g005770.3 Solanum lycopersicum HOM05D005864 ORTHO05D006770 5.0e-27 126.3 424 31.6
VMungo1127G2082 Vigna mungo HOM05D005864 ORTHO05D006770 5.0e-27 126.3 380 28.9
MSTRG.6547 Avicennia marina HOM05D005864 ORTHO05D006770 1.1e-26 125.2 411 31.1
Prupe.3G220100 Prunus persica HOM05D005864 ORTHO05D006770 1.1e-26 125.2 407 32.4
Sopen12g001690 Solanum pennellii HOM05D005864 ORTHO05D006770 1.5e-26 124.8 424 31.6
CDE05G3135 Ceratophyllum demersum HOM05D005864 ORTHO05D006770 2.5e-26 124.0 411 30.7
Migut.M00396 Erythranthe guttata HOM05D005864 ORTHO05D006770 3.3e-26 123.6 377 30.8
CAN.G80.20 Capsicum annuum HOM05D005864 ORTHO05D006770 1.6e-25 121.3 418 30.6
Eucgr.K00844 Eucalyptus grandis HOM05D005864 ORTHO05D006770 2.8e-25 120.6 371 30.5
PGSC0003DMG401024331 Solanum tuberosum HOM05D005864 ORTHO05D006770 8.1e-25 119.0 359 32.0
Duzib052G0164 Durio zibethinus HOM05D005864 ORTHO05D006770 1.1e-24 118.6 408 29.2
MD09G1105200 Malus domestica HOM05D005864 ORTHO05D006770 1.1e-24 118.6 394 31.0
Ca_19101_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.4e-24 118.2 404 29.0
SGA_v2.0_scaffold70G23416 Striga asiatica HOM05D005864 ORTHO05D006770 1.8e-24 117.9 382 29.1
PGR142G4274 Punica granatum HOM05D005864 ORTHO05D006770 2.3e-24 117.5 389 30.6
Sabra07G0098400 Salix brachista HOM05D005864 ORTHO05D006770 6.8e-24 115.9 405 30.4
Os02g0161200 Oryza sativa ssp. japonica HOM05D005864 ORTHO05D006770 8.9e-24 115.5 416 30.3
SHI10272 Sapria himalayana HOM05D005864 ORTHO05D006770 2.6e-23 114.0 380 29.7
Glyma.12G101400 Glycine max HOM05D005864 ORTHO05D006770 3.4e-23 113.6 375 28.3
Sp3g19810 Schrenkiella parvula HOM05D005864 ORTHO05D006770 3.4e-23 113.6 397 29.2
Actinidia32077 Actinidia chinensis HOM05D005864 ORTHO05D006770 4.4e-23 113.2 336 31.5
Lsat_1_v5_gn_3_43700 Lactuca sativa HOM05D005864 ORTHO05D006770 7.5e-23 112.5 399 29.8
FAN02G2067 Fragaria x ananassa HOM05D005864 ORTHO05D006770 9.8e-23 112.1 379 29.3
Nitab4.5_0000631g0060 Nicotiana tabacum HOM05D005864 ORTHO05D006770 1.7e-22 111.3 252 33.7
Zm00001eb207650 Zea mays HOM05D005864 ORTHO05D006770 1.7e-22 111.3 386 31.3
Dinv18530 Davidia involucrata HOM05D005864 ORTHO05D006770 4.9e-22 109.8 240 34.6
PSO675G8332 Papaver somniferum HOM05D005864 ORTHO05D006770 4.9e-22 109.8 413 27.4
RcHm_v2.0_Chr2g0160051 Rosa chinensis HOM05D005864 ORTHO05D006770 1.4e-21 108.2 167 38.9
TPR.G19040 Trifolium pratense HOM05D005864 ORTHO05D006770 1.4e-21 108.2 427 29.7
PSO541G3214 Papaver somniferum HOM05D005864 ORTHO05D006770 2.4e-21 107.5 427 27.2
Nitab4.5_0006207g0020 Nicotiana tabacum HOM05D005864 ORTHO05D006770 3.2e-21 107.1 413 27.1
Ciclev10015598m.g Citrus clementina HOM05D005864 ORTHO05D006770 1.2e-20 105.1 378 28.8
THA.LOC104809073 Tarenaya hassleriana HOM05D005864 ORTHO05D006770 1.2e-20 105.1 349 30.1
unitig_699.g19613 Utricularia gibba HOM05D005864 ORTHO05D006770 1.2e-20 105.1 406 28.1
Peaxi162Scf00012g03212 Petunia axillaris HOM05D005864 ORTHO05D006770 1.6e-20 104.8 391 30.7
FAN05G0568 Fragaria x ananassa HOM05D005864 ORTHO05D006770 2.1e-20 104.4 384 29.2
Gohir.A03G163800 Gossypium hirsutum HOM05D005864 ORTHO05D006770 2.7e-20 104.0 399 28.6
Gorai.005G209600 Gossypium raimondii HOM05D005864 ORTHO05D006770 1.3e-19 101.7 334 29.0
Thhalv10020800m.g Eutrema salsugineum HOM05D005864 ORTHO05D006770 3.9e-19 100.1 395 28.6
Aqoxy4G02070 Aquilegia oxysepala HOM05D005864 ORTHO05D006770 6.6e-19 99.4 427 28.3
HanXRQChr07g0191611 Helianthus annuus HOM05D005864 ORTHO05D006770 2.5e-18 97.4 419 26.5
BcaC09g49121 Brassica carinata HOM05D005864 ORTHO05D006770 4.3e-18 96.7 408 27.2
FAN09G3055 Fragaria x ananassa HOM05D005864 ORTHO05D006770 4.3e-18 96.7 400 28.0
ECA246G5102 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.6e-18 96.3 448 24.6
BcaB04g20556 Brassica carinata HOM05D005864 ORTHO05D006770 3.6e-17 93.6 395 27.1
A01p33130 Brassica napus HOM05D005864 ORTHO05D006770 2.3e-16 90.9 398 26.9
BolC1t04192H Brassica oleracea HOM05D005864 ORTHO05D006770 2.3e-16 90.9 408 26.5
Hund01249 Selenicereus undatus HOM05D005864 ORTHO05D006770 2.3e-16 90.9 132 42.4
CARHR097800 Cardamine hirsuta HOM05D005864 ORTHO05D006770 5.2e-16 89.7 395 27.1
Aa31LG8G8400 Aethionema arabicum HOM05D005864 ORTHO05D006770 1.5e-15 88.2 418 27.0
HPP92_002197 Vanilla planifolia HOM05D005864 ORTHO05D006770 1.5e-15 88.2 411 27.3
Sed0020795 Sechium edule HOM05D005864 ORTHO05D006770 2.9e-14 84.0 403 27.0
unitig_85.g27303 Utricularia gibba HOM05D005864 ORTHO05D006770 2.9e-14 84.0 347 27.1
AL3G35960 Arabidopsis lyrata HOM05D005864 ORTHO05D006770 3.8e-14 83.6 396 26.3
ATR0794G118 Amborella trichopoda HOM05D005864 ORTHO05D006770 4.9e-14 83.2 434 25.8
AT3G21810 Arabidopsis thaliana HOM05D005864 ORTHO05D006770 6.4e-14 82.8 411 25.5
DCAR_021187 Daucus carota HOM05D005864 ORTHO05D006770 5.4e-13 79.7 363 25.1
BraA01t03436Z Brassica rapa HOM05D005864 ORTHO05D006770 4.6e-12 76.6 398 25.6
C01p42370 Brassica napus HOM05D005864 ORTHO05D006770 1.9e-10 71.2 400 25.8
Zm00001eb273610 Zea mays HOM05D005864 ORTHO05D006770 1.9e-10 71.2 270 27.4
SEGI_09449 Sequoiadendron giganteum HOM05D005864 ORTHO05D006770 6.2e-09 66.2 221 26.7
TAR626G0331 Trochodendron aralioides HOM05D005864 ORTHO05D006770 6.2e-09 66.2 70 47.1
CSS0029042 Camellia sinensis var. sinensis HOM05D005864 ORTHO05D006770 1.4e-08 65.1 120 37.5
Carub.0003s2189 Capsella rubella HOM05D005864 ORTHO05D006770 8.9e-08 62.4 398 23.1
Ca_27661_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.3e-06 58.5 95 38.9
Ca_27662_v3 Cicer arietinum L. HOM05D005864 ORTHO05D006770 1.3e-06 58.5 95 38.9
Zm00001eb225260 Zea mays HOM05D005864 ORTHO05D006770 6.4e-06 56.2 167 29.3


User provided reference genes

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