Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036960 Chenopodium quinoa HOM05D007696 ORTHO05D009719 1.7e-106 389.4 211 100.0
AUR62032195 Chenopodium quinoa HOM05D007696 ORTHO05D009719 4.3e-97 358.2 210 92.9
EL10Ac5g11256 Beta vulgaris HOM05D007696 ORTHO05D009719 7.9e-59 231.1 211 64.9
Sc04g0003700 Simmondsia chinensis HOM05D007696 ORTHO05D009719 6.0e-51 204.9 203 55.7
QL10p022430 Quercus lobata HOM05D007696 ORTHO05D009719 8.7e-50 201.1 210 53.8
Actinidia39813 Actinidia chinensis HOM05D007696 ORTHO05D009719 5.3e-47 191.8 210 50.5
Hund10004 Selenicereus undatus HOM05D007696 ORTHO05D009719 9.0e-47 191.0 210 54.8
RcHm_v2.0_Chr7g0184691 Rosa chinensis HOM05D007696 ORTHO05D009719 1.4e-44 183.7 204 51.0
GSVIVG01008244001 Vitis vinifera HOM05D007696 ORTHO05D009719 1.4e-44 183.7 208 51.0
Manes.01G020300 Manihot esculenta HOM05D007696 ORTHO05D009719 1.9e-44 183.3 204 50.0
FAN08G1182 Fragaria x ananassa HOM05D007696 ORTHO05D009719 7.1e-44 181.4 204 50.5
TWI81G0276 Tripterygium wilfordii HOM05D007696 ORTHO05D009719 9.3e-44 181.0 205 49.8
Potri.015G049800 Populus trichocarpa HOM05D007696 ORTHO05D009719 1.2e-43 180.6 204 51.5
FAN13G0134 Fragaria x ananassa HOM05D007696 ORTHO05D009719 1.6e-43 180.3 204 50.0
Lj9A429T50 Lonicera japonica HOM05D007696 ORTHO05D009719 3.5e-43 179.1 204 52.0
FvH4_5g12640 Fragaria vesca HOM05D007696 ORTHO05D009719 4.6e-43 178.7 205 50.2
CiPaw.15G127500 Carya illinoinensis HOM05D007696 ORTHO05D009719 3.9e-42 175.6 211 47.9
Cc04_g07460 Coffea canephora HOM05D007696 ORTHO05D009719 5.1e-42 175.3 204 52.0
Lsat_1_v5_gn_4_115821 Lactuca sativa HOM05D007696 ORTHO05D009719 6.7e-42 174.9 204 47.5
Atru.chr9.778 Acer truncatum HOM05D007696 ORTHO05D009719 4.3e-41 172.2 200 50.5
FAN18G3725 Fragaria x ananassa HOM05D007696 ORTHO05D009719 9.7e-41 171.0 205 49.3
ECA232G0656 Erigeron canadensis HOM05D007696 ORTHO05D009719 4.8e-40 168.7 204 45.6
Dinv07368 Davidia involucrata HOM05D007696 ORTHO05D009719 6.3e-40 168.3 204 48.5
Prupe.5G218000 Prunus persica HOM05D007696 ORTHO05D009719 8.2e-40 167.9 207 47.8
Thecc.03G029300 Theobroma cacao HOM05D007696 ORTHO05D009719 4.1e-39 165.6 175 53.7
FAN04G2461 Fragaria x ananassa HOM05D007696 ORTHO05D009719 6.9e-39 164.9 217 46.1
Lalb_Chr19g0140261 Lupinus albus HOM05D007696 ORTHO05D009719 1.5e-38 163.7 209 45.0
CANSAT54G0455 Cannabis sativa HOM05D007696 ORTHO05D009719 5.9e-38 161.8 208 44.2
Oeu055893.1 Olea europaea HOM05D007696 ORTHO05D009719 1.7e-37 160.2 172 52.9
Aqoxy3G03910 Aquilegia oxysepala HOM05D007696 ORTHO05D009719 2.2e-37 159.8 209 46.4
COL.COLO4_16235 Corchorus olitorius HOM05D007696 ORTHO05D009719 5.0e-37 158.7 172 51.7
Ciclev10022427m.g Citrus clementina HOM05D007696 ORTHO05D009719 6.5e-37 158.3 172 49.4
CANSAT54G2838 Cannabis sativa HOM05D007696 ORTHO05D009719 8.5e-37 157.9 208 43.8
Duzib068G0054 Durio zibethinus HOM05D007696 ORTHO05D009719 2.5e-36 156.4 172 51.2
Gohir.D08G105400 Gossypium hirsutum HOM05D007696 ORTHO05D009719 1.2e-35 154.1 172 50.6
Gorai.004G112300 Gossypium raimondii HOM05D007696 ORTHO05D009719 1.2e-35 154.1 172 50.6
Cfa019805 Carpinus fangiana HOM05D007696 ORTHO05D009719 4.6e-35 152.1 197 46.7
Gohir.A08G094200 Gossypium hirsutum HOM05D007696 ORTHO05D009719 4.6e-35 152.1 172 49.4
vmacro17668 Vaccinium macrocarpon HOM05D007696 ORTHO05D009719 4.6e-35 152.1 204 42.6
MD14G1222400 Malus domestica HOM05D007696 ORTHO05D009719 1.4e-34 150.6 207 44.0
Phvul.011G012300 Phaseolus vulgaris HOM05D007696 ORTHO05D009719 2.2e-32 143.3 209 40.7
BcaB01g01733 Brassica carinata HOM05D007696 ORTHO05D009719 3.7e-32 142.5 167 49.1
Lj3g0018148 Lotus japonicus HOM05D007696 ORTHO05D009719 5.3e-31 138.7 209 41.6
Eucgr.K02660 Eucalyptus grandis HOM05D007696 ORTHO05D009719 9.1e-31 137.9 178 43.8
Thhalv10027967m.g Eutrema salsugineum HOM05D007696 ORTHO05D009719 9.1e-31 137.9 167 49.1
HanXRQChr09g0269891 Helianthus annuus HOM05D007696 ORTHO05D009719 9.1e-31 137.9 205 42.9
TAR622G0575 Trochodendron aralioides HOM05D007696 ORTHO05D009719 1.2e-30 137.5 172 48.3
VMungo1127G1702 Vigna mungo HOM05D007696 ORTHO05D009719 1.2e-30 137.5 209 40.2
arahy.Tifrunner.gnm1.ann1.ISQN6X Arachis hypogaea HOM05D007696 ORTHO05D009719 3.4e-30 136.0 204 41.7
THA.LOC104821847 Tarenaya hassleriana HOM05D007696 ORTHO05D009719 3.4e-30 136.0 167 49.1
Sp7g03680 Schrenkiella parvula HOM05D007696 ORTHO05D009719 5.9e-30 135.2 167 48.5
TPR.G30177 Trifolium pratense HOM05D007696 ORTHO05D009719 1.7e-29 133.7 199 43.2
PSO063G6876 Papaver somniferum HOM05D007696 ORTHO05D009719 2.9e-29 132.9 201 41.8
FAN18G2008 Fragaria x ananassa HOM05D007696 ORTHO05D009719 5.5e-28 128.6 231 38.1
MBI13_g27794_MAGBIO Magnolia biondii HOM05D007696 ORTHO05D009719 3.6e-27 125.9 174 44.8
CAN.G438.120 Capsicum annuum HOM05D007696 ORTHO05D009719 3.0e-26 122.9 172 41.3
Nn4g23733 Nelumbo nucifera HOM05D007696 ORTHO05D009719 1.1e-25 120.9 204 39.2
AT1G61415 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 3.1e-23 112.8 167 42.5
CSS0029722 Camellia sinensis var. sinensis HOM05D007696 ORTHO05D009719 5.3e-23 112.1 110 59.1
Glyma.09G227800 Glycine max HOM05D007696 ORTHO05D009719 9.1e-23 111.3 173 39.9
AL2G14870 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.5e-22 110.5 167 41.9
arahy.Tifrunner.gnm1.ann1.2ZW1BF Arachis hypogaea HOM05D007696 ORTHO05D009719 5.9e-22 108.6 239 33.9
Cpa.g.sc13.41 Carica papaya HOM05D007696 ORTHO05D009719 5.9e-22 108.6 106 54.7
AL2G14920 Arabidopsis lyrata HOM05D007696 ORTHO05D009719 1.3e-21 107.5 167 41.3
CARHR051130 Cardamine hirsuta HOM05D007696 ORTHO05D009719 1.3e-21 107.5 167 41.9
BcaC04g21230 Brassica carinata HOM05D007696 ORTHO05D009719 2.2e-21 106.7 167 39.5
C09p34110 Brassica napus HOM05D007696 ORTHO05D009719 2.2e-21 106.7 167 39.5
BolC9t56248H Brassica oleracea HOM05D007696 ORTHO05D009719 2.2e-21 106.7 167 39.5
Os05g0275600 Oryza sativa ssp. japonica HOM05D007696 ORTHO05D009719 2.9e-21 106.3 200 38.5
Zm00001eb347780 Zea mays HOM05D007696 ORTHO05D009719 2.9e-21 106.3 203 37.9
Psat7g166400 Pisum sativum HOM05D007696 ORTHO05D009719 1.5e-20 104.0 181 38.1
A09p26940 Brassica napus HOM05D007696 ORTHO05D009719 1.2e-19 100.9 167 38.9
BraA09t38264Z Brassica rapa HOM05D007696 ORTHO05D009719 1.2e-19 100.9 167 38.9
Medtr0085s0020 Medicago truncatula HOM05D007696 ORTHO05D009719 2.7e-19 99.8 132 42.4
Hma1.2p1_0340F.1_g129830 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.6e-19 99.4 74 70.3
Hma1.2p1_0340F.1_g129843 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 3.6e-19 99.4 74 70.3
DCAR_011551 Daucus carota HOM05D007696 ORTHO05D009719 3.3e-17 92.8 106 52.8
Carub.0002s0377 Capsella rubella HOM05D007696 ORTHO05D009719 5.7e-17 92.0 167 39.5
CDE02G2124 Ceratophyllum demersum HOM05D007696 ORTHO05D009719 1.3e-16 90.9 88 56.8
Rhsim08G0136100 Rhododendron simsii HOM05D007696 ORTHO05D009719 1.7e-16 90.5 266 28.9
Haze_18634 Corylus avellana HOM05D007696 ORTHO05D009719 3.1e-15 86.3 74 66.2
Lsat_1_v5_gn_9_67701 Lactuca sativa HOM05D007696 ORTHO05D009719 1.0e-13 81.3 71 66.2
Hma1.2p1_0340F.1_g129840 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.2e-12 75.9 95 42.1
Hma1.2p1_0340F.1_g129846 Hydrangea macrophylla HOM05D007696 ORTHO05D009719 4.2e-12 75.9 95 42.1
AT1G61450 Arabidopsis thaliana HOM05D007696 ORTHO05D009719 1.8e-10 70.5 105 43.8
Sabra15G0078100 Salix brachista HOM05D007696 ORTHO05D009719 3.1e-07 59.7 101 35.6
VMungo0251G1113 Vigna mungo HOM05D007696 ORTHO05D009719 1.6e-06 57.4 70 47.1


User provided reference genes

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