Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 8.2e-238 826.6 406 100.0
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.3e-229 797.3 406 96.3
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 1.4e-189 666.4 406 78.8
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.9e-170 602.8 477 63.5
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 2.9e-166 589.0 415 69.2
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.9e-150 535.8 410 62.9
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 5.4e-149 531.6 407 63.1
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.1e-148 529.6 347 71.2
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 2.1e-148 529.6 431 59.9
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.5e-148 528.9 426 59.6
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.0e-147 525.8 421 62.0
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 3.9e-147 525.4 420 60.7
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.1e-146 523.9 420 60.5
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.9e-146 523.1 436 59.6
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.3e-146 522.3 420 60.5
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 3.3e-146 522.3 437 60.0
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.3e-146 522.3 420 62.6
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 3.3e-146 522.3 425 62.4
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 1.2e-145 520.4 436 59.2
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.6e-145 520.0 419 61.6
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 2.1e-145 519.6 421 60.6
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 4.7e-145 518.5 411 60.6
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 8.1e-145 517.7 419 62.8
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 8.1e-145 517.7 418 61.2
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 8.1e-145 517.7 421 60.3
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 8.1e-145 517.7 415 60.2
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 8.1e-145 517.7 408 60.5
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.1e-144 517.3 414 61.1
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.4e-144 516.9 425 61.2
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.8e-144 516.5 422 60.2
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 3.1e-144 515.8 420 60.2
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 5.2e-144 515.0 419 59.9
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 6.9e-144 514.6 409 62.1
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.2e-143 513.8 404 60.4
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 2.6e-143 512.7 436 58.3
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.6e-143 512.7 427 58.5
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.4e-143 512.3 426 59.6
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.4e-143 511.9 356 67.4
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 4.4e-143 511.9 426 59.2
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 9.9e-143 510.8 405 61.2
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 1.3e-142 510.4 431 59.6
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 1.3e-142 510.4 402 61.7
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.8e-142 508.8 359 66.0
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 6.4e-142 508.1 414 59.4
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 8.4e-142 507.7 359 65.7
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.9e-141 506.5 408 62.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.2e-141 505.4 432 58.3
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 7.1e-141 504.6 433 57.5
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 9.3e-141 504.2 430 57.7
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 2.7e-140 502.7 353 66.6
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 4.6e-140 501.9 423 58.9
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 7.8e-140 501.1 434 58.1
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 1.0e-139 500.7 436 56.7
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.0e-139 500.7 433 57.0
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 3.9e-139 498.8 349 67.3
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 5.1e-139 498.4 344 67.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 8.7e-139 497.7 418 58.4
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 8.7e-139 497.7 437 57.9
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.9e-138 496.5 416 59.6
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.5e-138 496.1 401 60.8
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 2.5e-138 496.1 341 67.7
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 3.3e-138 495.7 406 61.8
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 4.3e-138 495.4 402 62.2
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.6e-138 495.0 416 59.1
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 5.6e-138 495.0 350 66.3
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 7.3e-138 494.6 422 57.8
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 7.3e-138 494.6 404 58.2
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 7.3e-138 494.6 351 67.0
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 9.6e-138 494.2 423 56.7
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.3e-137 493.8 401 60.6
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.6e-137 493.4 404 58.7
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 8.1e-137 491.1 431 59.4
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 1.1e-136 490.7 362 64.6
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-136 489.6 355 64.8
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 3.1e-136 489.2 352 65.1
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 6.9e-136 488.0 437 57.4
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 6.9e-136 488.0 437 57.4
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 6.9e-136 488.0 437 57.4
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 6.9e-136 488.0 408 59.1
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 9.0e-136 487.6 350 66.6
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 9.0e-136 487.6 349 65.9
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 1.2e-135 487.3 421 57.5
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.6e-135 486.1 401 60.1
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 5.8e-135 485.0 351 66.4
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 5.8e-135 485.0 350 65.1
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 9.9e-135 484.2 421 57.0
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.2e-134 483.0 416 58.7
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 4.9e-134 481.9 412 56.3
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 6.4e-134 481.5 350 64.6
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.1e-133 480.7 437 57.2
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.1e-133 480.7 402 57.5
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.4e-133 480.3 420 56.0
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 2.4e-133 479.6 360 62.2
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 3.2e-133 479.2 438 56.6
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 9.3e-133 477.6 413 59.1
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-132 477.2 401 59.1
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 1.6e-132 476.9 386 61.4
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 2.1e-132 476.5 425 56.9
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 2.7e-132 476.1 414 58.9
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 4.6e-132 475.3 420 56.4
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 1.0e-131 474.2 332 66.6
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 2.3e-131 473.0 416 58.7
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.7e-131 471.5 410 57.6
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 2.5e-130 469.5 414 58.0
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 2.5e-130 469.5 414 58.0
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 2.5e-130 469.5 414 58.0
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 5.6e-130 468.4 346 63.3
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 7.4e-130 468.0 406 58.1
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 9.6e-130 467.6 353 62.3
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 1.6e-129 466.8 417 56.8
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 6.2e-129 464.9 350 62.3
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 1.9e-125 453.4 413 54.5
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.5e-125 451.8 418 54.1
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 5.5e-125 451.8 393 57.3
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 1.0e-123 447.6 401 55.4
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.8e-123 446.8 328 66.5
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 7.4e-122 441.4 353 59.5
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 6.2e-121 438.3 349 59.6
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 2.4e-120 436.4 388 55.2
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 3.1e-120 436.0 353 60.6
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 7.6e-119 431.4 407 55.0
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 3.8e-118 429.1 362 58.6
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 7.1e-117 424.9 397 55.4
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-116 424.1 350 58.9
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 2.1e-116 423.3 395 55.4
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 2.1e-116 423.3 357 58.5
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 3.5e-116 422.5 349 60.2
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.5e-116 422.5 345 58.3
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 4.6e-116 422.2 349 58.7
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-115 421.0 350 58.9
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-114 416.4 345 59.4
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 4.8e-113 412.1 290 65.5
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.4e-112 410.6 438 49.3
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 6.9e-112 408.3 346 57.8
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 7.7e-111 404.8 415 52.8
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.9e-110 402.9 393 50.6
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.9e-109 400.2 359 55.4
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 7.2e-109 398.3 393 50.4
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 3.1e-104 382.9 348 54.3
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.9e-104 381.7 292 62.0
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 3.8e-102 375.9 343 53.9
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 2.5e-101 373.2 430 49.5
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 7.9e-100 368.2 250 68.8
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 2.3e-99 366.7 421 45.4
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 3.0e-99 366.3 343 51.3
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 2.0e-98 363.6 388 48.7
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.5e-95 354.0 348 50.9
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.0e-95 353.6 305 56.4
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 5.0e-94 349.0 250 64.0
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 9.4e-93 344.7 341 50.4
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 1.1e-90 337.8 388 46.6
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 2.8e-89 333.2 245 62.0
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.9e-86 323.2 356 46.9
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 8.5e-86 321.6 354 45.8
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 4.0e-83 312.8 242 60.7
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 5.3e-80 302.4 278 59.0
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.2e-79 301.2 349 45.3
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 5.5e-77 292.4 409 42.5
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 3.6e-76 289.7 237 55.7
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 4.7e-76 289.3 237 56.1
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 8.0e-76 288.5 349 45.3
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.8e-73 280.0 347 41.2
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 7.0e-72 275.4 300 47.0
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.3e-70 271.2 387 39.3
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 6.1e-68 262.3 342 39.8
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 2.3e-67 260.4 240 49.6
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.2e-67 259.2 400 35.0
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.7e-66 255.8 339 39.8
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.9e-63 245.7 347 38.9
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 2.9e-57 226.9 361 37.7
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 8.1e-36 155.6 152 53.3
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 4.9e-33 146.4 154 51.3
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 5.6e-29 132.9 415 25.8
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.3e-21 107.1 118 44.1
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 4.8e-20 103.2 85 49.4
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 9.3e-16 89.0 79 44.3
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.0e-15 86.3 120 35.0
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.3e-14 85.1 119 37.8
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.8e-12 76.6 68 45.6
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 6.9e-11 72.8 128 36.7
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.6e-10 70.9 139 35.3
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 3.9e-06 57.0 36 72.2


User provided reference genes

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