Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.7e-220 766.5 393 100.0
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 2.1e-206 722.2 393 95.2
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.6e-129 466.8 428 63.8
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 4.1e-69 266.2 435 42.8
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 3.5e-68 263.1 411 42.6
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 3.5e-68 263.1 411 42.6
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 7.3e-66 255.4 409 40.8
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.8e-65 253.4 411 40.1
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 3.6e-65 253.1 409 41.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.0e-64 250.0 426 40.1
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.5e-63 247.7 407 41.5
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.5e-63 247.7 408 40.4
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 2.0e-63 247.3 424 42.0
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 4.4e-63 246.1 415 40.5
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 1.1e-61 241.5 416 39.2
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 5.4e-61 239.2 417 38.4
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.6e-60 237.7 415 38.8
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 1.6e-60 237.7 420 38.3
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.1e-58 231.5 412 41.0
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.5e-58 231.1 416 38.7
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.5e-58 231.1 424 37.5
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-58 229.9 416 38.7
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 5.6e-58 229.2 414 37.7
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 5.6e-58 229.2 411 39.9
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 6.2e-57 225.7 417 41.0
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 6.2e-57 225.7 409 38.6
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 8.0e-57 225.3 395 41.3
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 3.1e-56 223.4 410 38.5
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 5.2e-56 222.6 410 38.5
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 6.8e-56 222.2 413 37.8
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 6.8e-56 222.2 415 37.1
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 8.9e-56 221.9 410 38.0
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.2e-55 221.5 422 38.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 1.5e-55 221.1 343 42.0
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 7.5e-55 218.8 430 36.7
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 9.8e-55 218.4 410 36.6
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 1.3e-54 218.0 413 38.7
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.7e-54 217.6 411 36.5
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.2e-54 217.2 410 37.3
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.2e-54 217.2 415 39.3
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 2.2e-54 217.2 413 38.7
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 4.9e-54 216.1 413 38.7
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.9e-54 216.1 411 37.0
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 8.3e-54 215.3 410 38.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.9e-53 214.2 416 36.5
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 2.4e-53 213.8 411 36.7
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 1.6e-52 211.1 422 37.0
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 2.7e-52 210.3 410 37.6
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 6.0e-52 209.1 424 36.1
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 7.8e-52 208.8 424 35.6
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 3.0e-51 206.8 428 37.1
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.1e-50 204.9 424 35.1
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 5.6e-50 202.6 309 43.0
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.1e-49 200.7 242 47.9
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 3.6e-49 199.9 421 36.3
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 4.7e-49 199.5 436 34.6
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.4e-48 198.0 410 36.6
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.3e-48 197.2 414 36.7
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.3e-48 197.2 423 35.9
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.1e-48 196.8 384 36.5
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 6.8e-48 195.7 410 36.6
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 6.8e-48 195.7 421 37.3
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 8.9e-48 195.3 424 34.7
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.0e-47 194.1 430 34.7
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 2.0e-47 194.1 416 35.8
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 2.0e-47 194.1 413 35.6
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 2.6e-47 193.7 410 35.9
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.9e-46 190.3 410 35.9
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 4.9e-46 189.5 427 35.4
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 6.4e-46 189.1 447 33.1
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 1.4e-45 188.0 245 49.0
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 2.4e-45 187.2 426 35.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 3.2e-45 186.8 440 35.5
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 3.2e-45 186.8 410 35.9
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 4.1e-45 186.4 421 35.9
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 5.4e-45 186.0 411 34.5
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 2.7e-44 183.7 427 35.8
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 4.6e-44 183.0 246 44.3
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 7.8e-44 182.2 411 35.5
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 1.7e-43 181.0 319 39.2
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.7e-43 181.0 245 43.3
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 5.1e-43 179.5 347 38.0
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 5.1e-43 179.5 321 38.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 8.6e-43 178.7 243 46.5
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.1e-42 178.3 408 33.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.1e-42 178.3 408 33.6
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 1.5e-42 177.9 423 34.0
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 3.3e-42 176.8 416 34.6
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 5.6e-42 176.0 402 34.3
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 9.5e-42 175.3 264 40.5
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 2.8e-41 173.7 244 42.2
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.6e-41 173.3 253 45.1
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.6e-41 173.3 283 43.1
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 8.1e-41 172.2 409 34.0
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.4e-40 171.4 180 55.6
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 3.1e-40 170.2 417 33.8
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.4e-39 166.8 262 43.5
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 9.9e-39 165.2 400 31.8
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-38 164.5 246 43.1
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.9e-38 163.7 241 44.0
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 2.9e-38 163.7 396 34.6
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 4.9e-38 162.9 402 35.8
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 8.4e-38 162.2 263 40.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.4e-37 161.4 386 34.2
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.4e-37 160.6 392 31.4
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.6e-33 147.9 258 40.3
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.7e-33 146.4 405 28.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 9.0e-32 142.1 414 29.5
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 9.9e-31 138.7 412 29.6
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 1.3e-30 138.3 382 29.1
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 2.2e-30 137.5 414 28.7
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 8.4e-30 135.6 282 35.8
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-29 135.2 418 28.5
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 1.9e-29 134.4 382 27.5
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 2.4e-29 134.0 418 28.5
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 5.4e-29 132.9 413 28.3
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 7.1e-29 132.5 413 28.3
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.7e-28 130.6 413 28.1
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.0e-27 127.1 311 31.8
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 4.3e-26 123.2 407 28.7
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 4.3e-26 123.2 280 35.4
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 5.6e-26 122.9 355 30.7
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.4e-24 118.2 267 33.7
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 9.9e-23 112.1 307 27.7
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.2e-22 110.9 414 27.3
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 4.9e-22 109.8 316 30.4
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 1.9e-21 107.8 230 35.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.4e-21 107.5 301 30.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 9.3e-21 105.5 207 37.7
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-18 98.2 172 38.4
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 5.6e-18 96.3 218 33.9
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 2.1e-17 94.4 172 37.2
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 3.1e-16 90.5 224 31.2
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 5.3e-16 89.7 83 55.4
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.5e-15 88.2 153 35.3
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-15 87.0 177 33.3
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 4.5e-15 86.7 153 34.6
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 4.5e-15 86.7 153 34.6
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.7e-14 84.7 275 29.8
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.7e-14 84.7 175 34.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 8.4e-14 82.4 144 34.7
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.9e-13 81.3 128 43.0
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 4.8e-09 66.6 60 55.0
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 2.0e-07 61.2 178 29.8


User provided reference genes

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