Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036624 Chenopodium quinoa HOM05D068200 ORTHO05D001848 3.0e-235 818.9 713 100.0
AUR62038811 Chenopodium quinoa HOM05D068200 ORTHO05D001848 5.5e-104 382.9 643 73.3
Ah.03g139590 Amaranthus hybridus HOM05D002243 ORTHO05D001848 8.9e-30 136.3 125 67.2
Sc03g0000700 Simmondsia chinensis HOM05D002243 ORTHO05D001848 1.5e-16 92.4 112 53.6
Dinv26979 Davidia involucrata HOM05D002243 ORTHO05D001848 1.5e-13 82.4 124 49.2
Lj2A425T27 Lonicera japonica HOM05D002243 ORTHO05D001848 2.0e-13 82.0 104 49.0
Hma1.2p1_1953F.1_g308845 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 1.7e-12 79.0 91 54.9
Hma1.2p1_1953F.1_g308850 Hydrangea macrophylla HOM05D002243 ORTHO05D001848 1.7e-12 79.0 91 54.9
GSVIVG01006594001 Vitis vinifera HOM05D002243 ORTHO05D001848 1.1e-11 76.3 79 55.7
Hund14156 Selenicereus undatus HOM05D002243 ORTHO05D001848 1.4e-11 75.9 556 38.1
Migut.H00311 Erythranthe guttata HOM05D002243 ORTHO05D001848 1.9e-11 75.5 83 50.6
Oeu061818.1 Olea europaea HOM05D002243 ORTHO05D001848 2.4e-11 75.1 93 47.3
Nitab4.5_0006325g0010 Nicotiana tabacum HOM05D002243 ORTHO05D001848 4.2e-11 74.3 109 41.3
Oeu059798.2 Olea europaea HOM05D002243 ORTHO05D001848 4.2e-11 74.3 95 45.3
BraA09t41115Z Brassica rapa HOM05D002243 ORTHO05D001848 9.3e-11 73.2 116 46.6
CsaV3_6G044480 Cucumis sativus L. HOM05D002243 ORTHO05D001848 1.2e-10 72.8 127 40.2
Prupe.6G213200 Prunus persica HOM05D002243 ORTHO05D001848 1.2e-10 72.8 137 41.6
Aa31LG7G14010 Aethionema arabicum HOM05D002243 ORTHO05D001848 2.7e-10 71.6 123 45.5
Cc07_g07600 Coffea canephora HOM05D023692 ORTHO05D001848 2.7e-10 71.6 108 43.5
Gohir.D03G032300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 2.7e-10 71.6 127 44.9
CAN.G1061.5 Capsicum annuum HOM05D002243 ORTHO05D001848 3.5e-10 71.2 128 39.8
Haze_21939 Corylus avellana HOM05D002243 ORTHO05D001848 3.5e-10 71.2 126 38.9
CiPaw.06G162700 Carya illinoinensis HOM05D002243 ORTHO05D001848 4.6e-10 70.9 80 55.0
MELO3C018032.2 Cucumis melo HOM05D002243 ORTHO05D001848 4.6e-10 70.9 93 51.6
Dinv01223 Davidia involucrata HOM05D002243 ORTHO05D001848 6.0e-10 70.5 91 46.2
Nn6g34568 Nelumbo nucifera HOM05D002243 ORTHO05D001848 6.0e-10 70.5 79 55.7
Nitab4.5_0000396g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 6.0e-10 70.5 128 39.1
Peaxi162Scf00096g00157 Petunia axillaris HOM05D002243 ORTHO05D001848 6.0e-10 70.5 109 38.5
Ciclev10028128m.g Citrus clementina HOM05D002243 ORTHO05D001848 7.8e-10 70.1 91 48.4
Gorai.003G033900 Gossypium raimondii HOM05D002243 ORTHO05D001848 1.3e-09 69.3 127 44.1
Manes.12G119100 Manihot esculenta HOM05D002243 ORTHO05D001848 1.3e-09 69.3 78 48.7
A09p57220 Brassica napus HOM05D002243 ORTHO05D001848 1.7e-09 68.9 121 45.5
COL.COLO4_17804 Corchorus olitorius HOM05D002243 ORTHO05D001848 1.7e-09 68.9 102 48.0
MSTRG.15339 Avicennia marina HOM05D002243 ORTHO05D001848 2.3e-09 68.6 118 39.8
Duzib147G0075 Durio zibethinus HOM05D002243 ORTHO05D001848 2.3e-09 68.6 104 50.0
QL11p028600 Quercus lobata HOM05D002243 ORTHO05D001848 2.3e-09 68.6 79 51.9
QL11p028729 Quercus lobata HOM05D002243 ORTHO05D001848 2.3e-09 68.6 79 51.9
Thecc.02G032300 Theobroma cacao HOM05D002243 ORTHO05D001848 2.3e-09 68.6 92 48.9
A04p17320 Brassica napus HOM05D002243 ORTHO05D001848 3.0e-09 68.2 94 50.0
TAR381G0567 Trochodendron aralioides HOM05D002243 ORTHO05D001848 3.0e-09 68.2 80 52.5
MD02G1193800 Malus domestica HOM05D002243 ORTHO05D001848 3.9e-09 67.8 111 45.9
Sed0013875 Sechium edule HOM05D002243 ORTHO05D001848 3.9e-09 67.8 93 49.5
VMungo0251G3413 Vigna mungo HOM05D002243 ORTHO05D001848 3.9e-09 67.8 94 50.0
Gohir.A02G148100 Gossypium hirsutum HOM05D002243 ORTHO05D001848 5.1e-09 67.4 130 42.3
ClCG01G017950 Citrullus lanatus HOM05D002243 ORTHO05D001848 6.6e-09 67.0 96 46.9
Thhalv10000072m.g Eutrema salsugineum HOM05D002243 ORTHO05D001848 6.6e-09 67.0 131 40.5
PGSC0003DMG400030665 Solanum tuberosum HOM05D002243 ORTHO05D001848 6.6e-09 67.0 191 31.4
ClCG10G009920 Citrullus lanatus HOM05D002243 ORTHO05D001848 8.7e-09 66.6 93 47.3
Solyc02g091890.3 Solanum lycopersicum HOM05D002243 ORTHO05D001848 8.7e-09 66.6 93 43.0
BcaC02g08599 Brassica carinata HOM05D002243 ORTHO05D001848 1.1e-08 66.2 94 48.9
C04p52120 Brassica napus HOM05D002243 ORTHO05D001848 1.1e-08 66.2 94 48.9
BolC4t26786H Brassica oleracea HOM05D002243 ORTHO05D001848 1.1e-08 66.2 94 48.9
CARHR246210 Cardamine hirsuta HOM05D002243 ORTHO05D001848 1.1e-08 66.2 120 46.7
Dinv44914 Davidia involucrata HOM05D002243 ORTHO05D001848 1.1e-08 66.2 93 47.3
Duzib132G0349 Durio zibethinus HOM05D002243 ORTHO05D001848 1.1e-08 66.2 98 48.0
Glyma.11G002700 Glycine max HOM05D002243 ORTHO05D001848 1.1e-08 66.2 88 51.1
TWI59G0771 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 1.1e-08 66.2 75 52.0
TAR376G0696 Trochodendron aralioides HOM05D002243 ORTHO05D001848 1.1e-08 66.2 93 40.9
CARHR114080 Cardamine hirsuta HOM05D002243 ORTHO05D001848 1.5e-08 65.9 113 44.2
Prupe.1G544100 Prunus persica HOM05D002243 ORTHO05D001848 1.5e-08 65.9 79 50.6
Sp4g01810 Schrenkiella parvula HOM05D002243 ORTHO05D001848 1.5e-08 65.9 127 43.3
Atru.chr5.2225 Acer truncatum HOM05D002243 ORTHO05D001848 1.9e-08 65.5 86 43.0
Actinidia36403 Actinidia chinensis HOM05D002243 ORTHO05D001848 1.9e-08 65.5 132 43.2
BraA04t17359Z Brassica rapa HOM05D002243 ORTHO05D001848 1.9e-08 65.5 131 43.5
Gohir.D02G234800 Gossypium hirsutum HOM05D002243 ORTHO05D001848 1.9e-08 65.5 90 47.8
TWI14G1334 Tripterygium wilfordii HOM05D002243 ORTHO05D001848 1.9e-08 65.5 78 46.2
AT2G22795 Arabidopsis thaliana HOM05D002243 ORTHO05D001848 2.5e-08 65.1 119 43.7
Cfa013396 Carpinus fangiana HOM05D002243 ORTHO05D001848 2.5e-08 65.1 112 40.2
FvH4_2g02971 Fragaria vesca HOM05D002243 ORTHO05D001848 2.5e-08 65.1 100 45.0
FAN24G3407 Fragaria x ananassa HOM05D002243 ORTHO05D001848 2.5e-08 65.1 100 45.0
Lalb_Chr09g0329371 Lupinus albus HOM05D002243 ORTHO05D001848 2.5e-08 65.1 126 42.1
AL4G12330 Arabidopsis lyrata HOM05D002243 ORTHO05D001848 3.3e-08 64.7 126 44.4
CiPaw.07G201100 Carya illinoinensis HOM05D002243 ORTHO05D001848 3.3e-08 64.7 133 40.6
CiPaw.08G028200 Carya illinoinensis HOM05D002243 ORTHO05D001848 3.3e-08 64.7 118 45.8
Duzib052G0991 Durio zibethinus HOM05D002243 ORTHO05D001848 3.3e-08 64.7 87 48.3
BcaC07g41022 Brassica carinata HOM05D002243 ORTHO05D001848 4.3e-08 64.3 121 45.5
C08p40260 Brassica napus HOM05D002243 ORTHO05D001848 4.3e-08 64.3 121 45.5
BolC8t51594H Brassica oleracea HOM05D002243 ORTHO05D001848 4.3e-08 64.3 121 45.5
Carub.0004s0193 Capsella rubella HOM05D002243 ORTHO05D001848 4.3e-08 64.3 126 43.7
DCAR_025837 Daucus carota HOM05D002243 ORTHO05D001848 4.3e-08 64.3 109 38.5
Thhalv10024837m.g Eutrema salsugineum HOM05D002243 ORTHO05D001848 4.3e-08 64.3 112 42.0
PSO782G0611 Papaver somniferum HOM05D002243 ORTHO05D001848 4.3e-08 64.3 130 39.2
PSO832G2889 Papaver somniferum HOM05D002243 ORTHO05D001848 4.3e-08 64.3 130 39.2
QL12p040753 Quercus lobata HOM05D002243 ORTHO05D001848 4.3e-08 64.3 80 48.8
BolC7t46430H Brassica oleracea HOM05D010391 ORTHO05D001848 5.6e-08 63.9 69 50.7
CiPaw.07G039400 Carya illinoinensis HOM05D002243 ORTHO05D001848 5.6e-08 63.9 132 40.2
Lalb_Chr06g0164961 Lupinus albus HOM05D002243 ORTHO05D001848 5.6e-08 63.9 100 46.0
Medtr5g005430 Medicago truncatula HOM05D002243 ORTHO05D001848 5.6e-08 63.9 66 50.0
Gohir.A03G213300 Gossypium hirsutum HOM05D002243 ORTHO05D001848 7.3e-08 63.5 82 47.6
Gorai.005G262800 Gossypium raimondii HOM05D002243 ORTHO05D001848 7.3e-08 63.5 90 46.7
Medtr1g105890 Medicago truncatula HOM05D002243 ORTHO05D001848 7.3e-08 63.5 91 45.1
Thecc.01G079600 Theobroma cacao HOM05D002243 ORTHO05D001848 7.3e-08 63.5 130 43.1
AT4G37820 Arabidopsis thaliana HOM05D002243 ORTHO05D001848 9.6e-08 63.2 102 47.1
Sopen02g036460 Solanum pennellii HOM05D002243 ORTHO05D001848 9.6e-08 63.2 137 38.0
Ah.01g024500 Amaranthus hybridus HOM05D002243 ORTHO05D001848 1.3e-07 62.8 90 45.6
CANSAT21G1644 Cannabis sativa HOM05D002243 ORTHO05D001848 1.3e-07 62.8 115 39.1
CiPaw.05G022100 Carya illinoinensis HOM05D002243 ORTHO05D001848 1.3e-07 62.8 90 45.6
C07p59860 Brassica napus HOM05D010391 ORTHO05D001848 2.1e-07 62.0 69 50.7
SGA_v2.0_scaffold121G33087 Striga asiatica HOM05D002243 ORTHO05D001848 2.1e-07 62.0 124 41.1
FAN08G2076 Fragaria x ananassa HOM05D002243 ORTHO05D001848 2.8e-07 61.6 116 44.8
FAN15G2335 Fragaria x ananassa HOM05D002243 ORTHO05D001848 2.8e-07 61.6 100 44.0
FAN20G2409 Fragaria x ananassa HOM05D002243 ORTHO05D001848 2.8e-07 61.6 100 44.0
RcHm_v2.0_Chr6g0247781 Rosa chinensis HOM05D002243 ORTHO05D001848 2.8e-07 61.6 117 40.2
Sed0027893 Sechium edule HOM05D002243 ORTHO05D001848 2.8e-07 61.6 89 46.1
SGA_v2.0_scaffold269G46251 Striga asiatica HOM05D002243 ORTHO05D001848 2.8e-07 61.6 108 43.5
CARHR241840 Cardamine hirsuta HOM05D010391 ORTHO05D001848 3.6e-07 61.2 71 49.3
DCAR_021931 Daucus carota HOM05D002243 ORTHO05D001848 3.6e-07 61.2 115 37.4
Psat6g212880 Pisum sativum HOM05D002243 ORTHO05D001848 3.6e-07 61.2 73 43.8
unitig_46.g18837 Utricularia gibba HOM05D002243 ORTHO05D001848 3.6e-07 61.2 155 38.1
MD10G1112600 Malus domestica HOM05D002243 ORTHO05D001848 4.8e-07 60.8 91 45.1
BcaNung04324 Brassica carinata HOM05D010391 ORTHO05D001848 6.2e-07 60.5 67 49.3
BraA03t15271Z Brassica rapa HOM05D010391 ORTHO05D001848 6.2e-07 60.5 103 40.8
Ca_11007_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 6.2e-07 60.5 87 43.7
Ciclev10025075m.g Citrus clementina HOM05D002243 ORTHO05D001848 6.2e-07 60.5 117 37.6
Oeu005723.1 Olea europaea HOM05D002243 ORTHO05D001848 6.2e-07 60.5 90 45.6
GSVIVG01037020001 Vitis vinifera HOM05D002243 ORTHO05D001848 6.2e-07 60.5 90 46.7
CANSAT01G3077 Cannabis sativa HOM05D002243 ORTHO05D001848 8.1e-07 60.1 129 39.5
Cfa006795 Carpinus fangiana HOM05D002243 ORTHO05D001848 8.1e-07 60.1 123 35.8
Haze_03961 Corylus avellana HOM05D002243 ORTHO05D001848 8.1e-07 60.1 135 36.3
Glyma.05G110000 Glycine max HOM05D002243 ORTHO05D001848 8.1e-07 60.1 90 43.3
Glyma.20G136900 Glycine max HOM05D002243 ORTHO05D001848 8.1e-07 60.1 72 50.0
MD15G1395300 Malus domestica HOM05D002243 ORTHO05D001848 8.1e-07 60.1 104 40.4
Oeu039769.1 Olea europaea HOM05D002243 ORTHO05D001848 8.1e-07 60.1 125 36.8
Psat4g088240 Pisum sativum HOM05D002243 ORTHO05D001848 8.1e-07 60.1 96 43.8
RcHm_v2.0_Chr7g0232141 Rosa chinensis HOM05D002243 ORTHO05D001848 8.1e-07 60.1 113 44.2
CAN.G504.9 Capsicum annuum HOM05D002243 ORTHO05D001848 1.1e-06 59.7 106 42.5
Rhsim10G0087400 Rhododendron simsii HOM05D002243 ORTHO05D001848 1.1e-06 59.7 172 36.0
Aqoxy5G01944 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 1.4e-06 59.3 118 39.8
A03p62300 Brassica napus HOM05D010391 ORTHO05D001848 1.4e-06 59.3 103 42.7
Ca_28397_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 1.4e-06 59.3 102 45.1
FAN27G0993 Fragaria x ananassa HOM05D002243 ORTHO05D001848 1.4e-06 59.3 100 43.0
Ah.01g007180 Amaranthus hybridus HOM05D002243 ORTHO05D001848 1.8e-06 58.9 79 45.6
AL7G12850 Arabidopsis lyrata HOM05D002243 ORTHO05D001848 1.8e-06 58.9 190 33.2
Carub.0007s0242 Capsella rubella HOM05D002243 ORTHO05D001848 1.8e-06 58.9 121 40.5
Duzib264G1092 Durio zibethinus HOM05D002243 ORTHO05D001848 1.8e-06 58.9 91 46.2
Thhalv10025138m.g Eutrema salsugineum HOM05D010391 ORTHO05D001848 1.8e-06 58.9 70 48.6
Lj5g0020290 Lotus japonicus HOM05D002243 ORTHO05D001848 1.8e-06 58.9 94 40.4
Hund06501 Selenicereus undatus HOM05D002243 ORTHO05D001848 1.8e-06 58.9 93 47.3
Medtr4g097790 Medicago truncatula HOM05D002243 ORTHO05D001848 2.4e-06 58.5 121 38.0
Nitab4.5_0007488g0020 Nicotiana tabacum HOM05D002243 ORTHO05D001848 2.4e-06 58.5 126 38.1
Phvul.007G048200 Phaseolus vulgaris HOM05D002243 ORTHO05D001848 2.4e-06 58.5 90 43.3
Sp7g31490 Schrenkiella parvula HOM05D010391 ORTHO05D001848 2.4e-06 58.5 71 46.5
Ciclev10002567m.g Citrus clementina HOM05D002243 ORTHO05D001848 3.1e-06 58.2 115 35.7
Dinv09523 Davidia involucrata HOM05D002243 ORTHO05D001848 3.1e-06 58.2 90 43.3
Gorai.008G087300 Gossypium raimondii HOM05D002243 ORTHO05D001848 3.1e-06 58.2 197 31.5
Lalb_Chr02g0144841 Lupinus albus HOM05D002243 ORTHO05D001848 3.1e-06 58.2 89 43.8
Lalb_Chr05g0220451 Lupinus albus HOM05D002243 ORTHO05D001848 3.1e-06 58.2 192 32.3
BcaNung02923 Brassica carinata HOM05D010391 ORTHO05D001848 4.0e-06 57.8 97 41.2
Ca_22085_v3 Cicer arietinum L. HOM05D002243 ORTHO05D001848 4.0e-06 57.8 121 40.5
Eucgr.F02202 Eucalyptus grandis HOM05D002243 ORTHO05D001848 4.0e-06 57.8 86 43.0
Manes.05G185500 Manihot esculenta HOM05D002243 ORTHO05D001848 4.0e-06 57.8 128 38.3
Peaxi162Scf00016g03211 Petunia axillaris HOM05D002243 ORTHO05D001848 4.0e-06 57.8 107 41.1
PGSC0003DMG400005118 Solanum tuberosum HOM05D002243 ORTHO05D001848 4.0e-06 57.8 94 43.6
Aa31sc178G50 Aethionema arabicum HOM05D010391 ORTHO05D001848 5.3e-06 57.4 70 48.6
BcaNung04675 Brassica carinata HOM05D010391 ORTHO05D001848 5.3e-06 57.4 72 44.4
HanXRQChr09g0263091 Helianthus annuus HOM05D002243 ORTHO05D001848 5.3e-06 57.4 112 39.3
Lj1g0019537 Lotus japonicus HOM05D002243 ORTHO05D001848 5.3e-06 57.4 87 43.7
Aqoxy6G01532 Aquilegia oxysepala HOM05D002243 ORTHO05D001848 6.9e-06 57.0 71 42.3
BcaB06g27840 Brassica carinata HOM05D002243 ORTHO05D001848 6.9e-06 57.0 171 32.7
Carub.0007s0668 Capsella rubella HOM05D010391 ORTHO05D001848 6.9e-06 57.0 70 47.1
Lsat_1_v5_gn_2_81560 Lactuca sativa HOM05D002243 ORTHO05D001848 6.9e-06 57.0 74 41.9
Lsat_1_v5_gn_4_159100 Lactuca sativa HOM05D002243 ORTHO05D001848 6.9e-06 57.0 96 40.6
Oeu010475.1 Olea europaea HOM05D002243 ORTHO05D001848 6.9e-06 57.0 84 42.9
Atru.chr3.1086 Acer truncatum HOM05D002243 ORTHO05D001848 9.0e-06 56.6 86 37.2
AUR62030879 Chenopodium quinoa HOM05D002243 ORTHO05D001848 9.0e-06 56.6 91 45.1
Glyma.17G086000 Glycine max HOM05D002243 ORTHO05D001848 9.0e-06 56.6 130 36.9
Sc14g0002480 Simmondsia chinensis HOM05D002243 ORTHO05D001848 9.0e-06 56.6 95 41.1
THA.LOC104807645 Tarenaya hassleriana HOM05D002243 ORTHO05D001848 9.0e-06 56.6 112 41.1


User provided reference genes

Program Settings