Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 7.3e-232 807.0 443 100.0
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.2e-205 719.9 392 94.4
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 5.5e-179 631.3 425 76.7
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 1.5e-160 570.1 406 74.1
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 4.9e-135 485.3 407 62.7
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.8e-134 483.4 408 61.3
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 7.0e-134 481.5 384 65.4
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 9.2e-134 481.1 419 61.1
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.2e-133 480.7 413 61.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-133 480.3 405 63.0
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 4.5e-133 478.8 412 62.1
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 1.0e-132 477.6 411 61.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-132 477.2 414 61.4
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.7e-132 476.9 409 62.1
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-132 476.5 405 62.5
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 2.9e-132 476.1 414 59.4
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.9e-131 473.4 414 58.9
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 1.9e-131 473.4 414 60.4
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.5e-131 473.0 406 61.6
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 4.3e-131 472.2 405 61.5
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 5.6e-131 471.9 408 61.0
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 9.5e-131 471.1 406 60.8
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.6e-130 470.3 406 60.8
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.8e-129 466.8 406 59.6
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 8.9e-129 464.5 415 59.0
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 2.6e-128 463.0 408 58.8
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.6e-128 463.0 405 61.0
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.6e-128 463.0 325 72.9
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 3.7e-127 459.1 404 60.9
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.9e-126 456.8 409 59.2
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 5.4e-126 455.3 402 60.2
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 7.8e-125 451.4 405 59.3
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.0e-124 451.1 407 58.0
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 5.0e-124 448.7 407 60.2
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 6.6e-124 448.4 411 57.9
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 9.5e-123 444.5 408 58.3
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.2e-122 444.1 406 57.6
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.2e-122 444.1 406 58.4
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 1.2e-122 444.1 464 52.6
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 2.1e-122 443.4 409 58.4
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 2.8e-122 443.0 406 57.4
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 6.2e-122 441.8 410 58.5
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 6.2e-122 441.8 459 52.5
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 1.1e-121 441.0 411 57.7
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.5e-120 437.2 402 58.0
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 2.6e-120 436.4 402 57.0
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 4.4e-120 435.6 405 57.0
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 9.8e-120 434.5 409 56.0
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 9.8e-120 434.5 408 56.9
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 3.7e-119 432.6 415 54.7
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 4.9e-119 432.2 407 57.2
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 8.3e-119 431.4 417 55.6
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 3.2e-118 429.5 403 57.3
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 5.4e-118 428.7 403 57.1
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.1e-118 428.3 403 57.3
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 3.5e-117 426.0 417 55.2
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 6.0e-117 425.2 412 58.0
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.3e-116 424.1 410 55.9
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.9e-116 422.5 418 54.8
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 6.6e-116 421.8 353 64.0
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 1.9e-115 420.2 403 56.3
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 7.3e-115 418.3 416 54.8
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.1e-114 416.8 406 55.7
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.4e-113 414.1 353 61.8
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-113 414.1 415 54.7
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 5.2e-113 412.1 404 55.4
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 6.8e-113 411.8 326 66.9
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 6.8e-113 411.8 403 55.8
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 8.9e-113 411.4 418 55.0
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 1.2e-112 411.0 408 54.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.2e-112 411.0 409 55.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 4.4e-112 409.1 409 54.5
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 4.4e-112 409.1 404 55.0
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 9.9e-112 407.9 404 54.7
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 2.2e-111 406.8 441 52.2
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 3.7e-111 406.0 404 54.5
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 3.7e-111 406.0 339 62.2
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 6.4e-111 405.2 410 53.7
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-110 404.1 410 53.4
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.4e-110 404.1 407 54.5
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.4e-110 403.3 410 53.4
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.6e-109 400.6 412 54.9
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 2.7e-109 399.8 356 59.0
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.7e-109 399.8 357 59.4
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 7.8e-109 398.3 409 53.8
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 1.7e-108 397.1 412 53.4
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 4.3e-107 392.5 417 52.3
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 1.6e-106 390.6 423 51.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.6e-106 390.6 414 52.9
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.6e-104 383.3 390 53.8
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 2.9e-103 379.8 402 52.2
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.9e-102 377.1 362 55.8
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 9.3e-102 374.8 284 68.3
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 9.3e-102 374.8 314 63.1
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 4.6e-101 372.5 410 52.7
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.3e-99 366.3 351 56.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.3e-99 366.3 417 50.1
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.3e-99 365.9 414 51.0
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.6e-99 365.5 321 61.7
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.3e-98 364.4 371 57.1
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.6e-98 362.8 282 68.4
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 8.4e-95 351.7 300 61.0
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.2e-94 349.7 282 67.0
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 7.1e-94 348.6 281 65.5
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 1.0e-92 344.7 355 56.1
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 9.6e-91 338.2 338 57.7
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.2e-88 331.3 458 45.0
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.1e-86 324.7 338 52.7
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.2e-74 282.0 376 46.8
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 7.7e-64 248.8 206 62.1
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 6.7e-60 235.7 426 37.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 8.8e-60 235.3 425 37.2
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 1.4e-57 228.0 219 54.3
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 2.2e-50 204.1 128 78.9
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 3.5e-48 196.8 128 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.0e-44 185.3 419 31.7
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 6.3e-42 176.0 124 70.2
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 3.5e-40 170.2 335 35.5
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 3.7e-26 123.6 101 63.4
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.1e-21 107.8 89 64.0
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 4.7e-21 106.7 92 56.5
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.6e-19 100.9 80 63.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.7e-19 99.8 82 62.2
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.6e-16 91.7 123 39.0
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 1.7e-15 88.2 237 32.9
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 8.6e-15 85.9 111 42.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.2e-08 65.5 77 48.1


User provided reference genes

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